View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20309_low_1 (Length: 679)

Name: NF20309_low_1
Description: NF20309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20309_low_1
NF20309_low_1
[»] chr3 (13 HSPs)
chr3 (1-501)||(34527457-34527955)
chr3 (403-504)||(27633606-27633707)
chr3 (403-504)||(34518427-34518528)
chr3 (302-366)||(27633799-27633863)
chr3 (302-366)||(34518617-34518681)
chr3 (428-504)||(27618067-27618143)
chr3 (560-636)||(34527314-34527398)
chr3 (25-102)||(27627524-27627601)
chr3 (25-102)||(34513313-34513390)
chr3 (428-504)||(34506863-34506939)
chr3 (589-636)||(27633516-27633563)
chr3 (157-206)||(27633921-27633970)
chr3 (589-636)||(34518298-34518344)
[»] chr6 (4 HSPs)
chr6 (13-102)||(24486465-24486555)
chr6 (9-102)||(24468193-24468286)
chr6 (13-102)||(24485746-24485835)
chr6 (13-102)||(24472504-24472595)
[»] chr2 (4 HSPs)
chr2 (9-102)||(10527955-10528048)
chr2 (9-90)||(10534867-10534948)
chr2 (314-381)||(10534541-10534609)
chr2 (312-381)||(10527634-10527704)
[»] scaffold1215 (2 HSPs)
scaffold1215 (9-90)||(2055-2136)
scaffold1215 (314-381)||(1729-1797)
[»] chr1 (1 HSPs)
chr1 (53-98)||(21991125-21991170)


Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Complemental strand, 34527955 - 34527457
Alignment:
Q  1 aacttgagttcatcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaactttctaatatcaatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34527955 aacttgagttcatcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcacttcaatgaatcttgaactttctaatatcaatg 34527856  T
Q  101 aagaagacatgaggattctaagaagggtcagaattacaagtccaccaaatatttgtatgacgaatgaggttgacgatcacagtatttctggagatgagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34527855 aagaagacatgaggattctaagaagggtcagaattacaagtccaccaaatatttgtatgacgaatgaggttgatgatcacagtatttctggagatgagaa 34527756  T
Q  201 aggttgnnnnnnnnnnaatttgattttaataatctttctttatgtgtgtgaacctgttctttctctatgttggtaccttagaaatgaagttaggttctct 300  Q
    ||||||          |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34527755 aggttgtttttttt--aatttgattttaataatctttctttatgtgtgtgaacctgttctttctgtatgttggtaccttagaaatgaagttaggttctct 34527658  T
Q  301 ctgatatatcaattttattcttcttggatgtattttattgaatagattgattatatgtcaagtctttaacttagctcaggaaaattttgttcttaatttg 400  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34527657 ctgatatatcaattttattcttcttggatgtattttattgaagagattgattatatgtcaagtcttaaacttagctcaggaaaattttgttcttaatttg 34527558  T
Q  401 gatgaggttaaaaattaaacattttctttgttatggagtttttaaaactgaataggattatcatgaaaacctttaaaccaaatcctttacaaatgtttgc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34527557 gatgaggttaaaaattaaacattttctttgttatggagtttttaaaactgaataggattatcatgaaaacctttaaaccaaatcctttacaaatgtttgc 34527458  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 403 - 504
Target Start/End: Complemental strand, 27633707 - 27633606
Alignment:
Q  403 tgaggttaaaaattaaacattttctttgttatggagtttttaaaactgaataggattatcatgaaaacctttaaaccaaatcctttacaaatgtttgctg 502  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27633707 tgaggttaaaaattaaaccttttcattgttatggagtttttaaaactcaatgggattattatgaaaacctttaaaccaaatcctttacaaatgtttgctg 27633608  T
Q  503 aa 504  Q
    ||    
T  27633607 aa 27633606  T

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Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 403 - 504
Target Start/End: Complemental strand, 34518528 - 34518427
Alignment:
Q  403 tgaggttaaaaattaaacattttctttgttatggagtttttaaaactgaataggattatcatgaaaacctttaaaccaaatcctttacaaatgtttgctg 502  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  34518528 tgaggttaaaaattaaaccttttcgttgttatggagtttttaaaactgaatgggattattatgaaaaccttcaaaccaaatcctttacaaatgtttgctg 34518429  T
Q  503 aa 504  Q
    ||    
T  34518428 aa 34518427  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 27633863 - 27633799
Alignment:
Q  302 tgatatatcaattttattcttcttggatgtattttattgaatagattgattatatgtcaagtctt 366  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27633863 tgatatatcaattttgttcttcttggatgtattttatagaatagattgattatatgtcaagtctt 27633799  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 34518681 - 34518617
Alignment:
Q  302 tgatatatcaattttattcttcttggatgtattttattgaatagattgattatatgtcaagtctt 366  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34518681 tgatatatcaattttgttcttcttggatgtattttatagaatagattgattatatgtcaagtctt 34518617  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 428 - 504
Target Start/End: Complemental strand, 27618143 - 27618067
Alignment:
Q  428 ttgttatggagtttttaaaactgaataggattatcatgaaaacctttaaaccaaatcctttacaaatgtttgctgaa 504  Q
    |||||||||||||||| ||||||| || ||||||||||||| ||| |||||||||| |||| ||||| |||||||||    
T  27618143 ttgttatggagttttttaaactgattaagattatcatgaaagcctctaaaccaaattcttttcaaatctttgctgaa 27618067  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 560 - 636
Target Start/End: Complemental strand, 34527398 - 34527314
Alignment:
Q  560 atgtaacctcacattctttttagcatcg--------ttttctttcttgttgacattttgtgatcttgtgcatatgtatcagtgta 636  Q
    |||||||||||||||||||||||||| |         ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34527398 atgtaacctcacattctttttagcattgatttctttctttctttcttgttgatattttgtgatcttgtgcatatgtatcagtgta 34527314  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 27627601 - 27627524
Alignment:
Q  25 cctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaactttctaatatcaatgaa 102  Q
    ||||||| ||||||  |||||||||| | |||||| ||||| |||||||||||||||||||| ||| || ||||||||    
T  27627601 cctactgtggtgccacaagattcttcagattttgaaaatttggcttcaatgaatcttgaactatctgatttcaatgaa 27627524  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 34513390 - 34513313
Alignment:
Q  25 cctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaactttctaatatcaatgaa 102  Q
    ||||||| ||||||  |||||||||| | |||||| ||||| |||||||||||||||||||| ||| || ||||||||    
T  34513390 cctactgtggtgccacaagattcttcagattttgaaaatttggcttcaatgaatcttgaactatctgatttcaatgaa 34513313  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 428 - 504
Target Start/End: Complemental strand, 34506939 - 34506863
Alignment:
Q  428 ttgttatggagtttttaaaactgaataggattatcatgaaaacctttaaaccaaatcctttacaaatgtttgctgaa 504  Q
    |||||||||||||||| ||||||| || ||||||||||||| ||| |||||||||  |||| ||||| |||| ||||    
T  34506939 ttgttatggagttttttaaactgattaagattatcatgaaagcctctaaaccaaactcttttcaaatctttgttgaa 34506863  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 589 - 636
Target Start/End: Complemental strand, 27633563 - 27633516
Alignment:
Q  589 tttctttcttgttgacattttgtgatcttgtgcatatgtatcagtgta 636  Q
    ||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  27633563 tttctttcttgttggtattttttgatcttgtgcatatgtatcagtgta 27633516  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 27633970 - 27633921
Alignment:
Q  157 atgacgaatgaggttgacgatcacagtatttctggagatgagaaaggttg 206  Q
    |||| ||||||||||||||||||||||||||| |  ||||||||||||||    
T  27633970 atgatgaatgaggttgacgatcacagtatttcggtggatgagaaaggttg 27633921  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 589 - 636
Target Start/End: Complemental strand, 34518344 - 34518298
Alignment:
Q  589 tttctttcttgttgacattttgtgatcttgtgcatatgtatcagtgta 636  Q
    ||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  34518344 tttctttcttgttggtatttt-tgatcttgtgcatatgtatcagtgta 34518298  T

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Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 24486465 - 24486555
Alignment:
Q  13 tcttcaacaacacctactgaggtgcctgaagattcttctgtttttg-acaatttcgcttcaatgaatcttgaactttctaatatcaatgaa 102  Q
    ||||||||||||||||||||| ||||  ||| |||||||||||||| |||||||  |||||||||| |||||||||||| |||||||||||    
T  24486465 tcttcaacaacacctactgagatgccacaaggttcttctgtttttgtacaatttttcttcaatgaagcttgaactttctgatatcaatgaa 24486555  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 24468193 - 24468286
Alignment:
Q  9 ttcatcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaactttctaatatcaatgaa 102  Q
    |||||||| |||||||| ||||||| |||   ||| |||||| |||||| ||||||| || |||||||| |||||||||| | |||||||||||    
T  24468193 ttcatcttaaacaacacttactgagatgcaacaaggttcttccgttttttacaattttgcgtcaatgaagcttgaactttatgatatcaatgaa 24468286  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 24485746 - 24485835
Alignment:
Q  13 tcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaactttctaatatcaatgaa 102  Q
    |||||||||||||||||| || ||||  |||  | ||| |||||| ||| ||| ||||||||||| |||||||||||| |||||||||||    
T  24485746 tcttcaacaacacctactaagatgccacaaggcttttccgttttttacagttttgcttcaatgaagcttgaactttctgatatcaatgaa 24485835  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 24472504 - 24472595
Alignment:
Q  13 tcttcaacaacacctactgaggtgcctgaagattcttctgtt--tttgacaatttcgcttcaatgaatcttgaactttctaatatcaatgaa 102  Q
    ||||||||||||||||||||| ||||  ||| || ||| |||  ||| ||  |||  |||||||||| ||||||||||||||||||||||||    
T  24472504 tcttcaacaacacctactgagatgccccaaggtttttccgttctttttacggtttttcttcaatgaagcttgaactttctaatatcaatgaa 24472595  T

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Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 10528048 - 10527955
Alignment:
Q  9 ttcatcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaactttctaatatcaatgaa 102  Q
    ||||||| || |||||||||||||||||||  ||| ||||||||||||||||||||| | ||| ||||| ||| |||||||| ||||| |||||    
T  10528048 ttcatctccagcaacacctactgaggtgccccaaggttcttctgtttttgacaattttgattcgatgaagcttaaactttctgatatctatgaa 10527955  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 10534948 - 10534867
Alignment:
Q  9 ttcatcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaactttct 90  Q
    ||||||| || ||||||||||||||||| |  ||| ||||||||||||| ||||||| | ||| ||||| ||| ||||||||    
T  10534948 ttcatctccaccaacacctactgaggtgacacaaggttcttctgtttttaacaattttgattcgatgaagcttaaactttct 10534867  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 314 - 381
Target Start/End: Complemental strand, 10534609 - 10534541
Alignment:
Q  314 tttattcttcttggatgtattttattgaatagatt-gattatatgtcaagtctttaacttagctcagga 381  Q
    |||||| | ||||||||||||||  | |||||||| ||| ||||||||||||||||| |||||||||||    
T  10534609 tttattgtgcttggatgtattttgctaaatagatttgatcatatgtcaagtctttaatttagctcagga 10534541  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 312 - 381
Target Start/End: Complemental strand, 10527704 - 10527634
Alignment:
Q  312 attttattcttcttggatgtattttattgaatagatt-gattatatgtcaagtctttaacttagctcagga 381  Q
    |||||||| | |||| |||||||||  |||||||||| ||| ||| ||||||||||||| |||||||||||    
T  10527704 attttattgtgcttgtatgtattttgctgaatagatttgatcatacgtcaagtctttaatttagctcagga 10527634  T

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Target: scaffold1215 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 2136 - 2055
Alignment:
Q  9 ttcatcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaactttct 90  Q
    ||||||| || ||||||||||||||||| |  ||| ||||||||||||| ||||||| | ||| ||||| ||| ||||||||    
T  2136 ttcatctccaccaacacctactgaggtgacacaaggttcttctgtttttaacaattttgattcgatgaagcttaaactttct 2055  T

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Target: scaffold1215; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 314 - 381
Target Start/End: Complemental strand, 1797 - 1729
Alignment:
Q  314 tttattcttcttggatgtattttattgaatagatt-gattatatgtcaagtctttaacttagctcagga 381  Q
    |||||| | ||||||||||||||  | |||||||| ||| ||||||||||||||||| |||||||||||    
T  1797 tttattgtgcttggatgtattttgctaaatagatttgatcatatgtcaagtctttaatttagctcagga 1729  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 21991170 - 21991125
Alignment:
Q  53 tttttgacaatttcgcttcaatgaatcttgaactttctaatatcaa 98  Q
    ||||||||||| |  |||||||||||||||| ||||||||||||||    
T  21991170 tttttgacaatctgtcttcaatgaatcttgagctttctaatatcaa 21991125  T

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