View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20309_low_2 (Length: 475)
Name: NF20309_low_2
Description: NF20309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20309_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 7 - 472
Target Start/End: Original strand, 782934 - 783399
Alignment:
| Q |
7 |
tatccttcatctctctcaaacccatcaagttcacaacaaaaacaacaaaaatctcagctgcagatgagaaaacagaagcagcatcagttacaacaaaaga |
106 |
Q |
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| T |
782934 |
tatccttcatctctctcaaacccatcaagttcacaacaaaaacaacaaaaatctcagctgcagatgagaaaacagaagcagcatcagttacaacaaaaga |
783033 |
T |
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| Q |
107 |
agaagctcctgctgcaccagttggtttcactccacctgaactagacccaaacacaccttcaccaatctttggaggaagcactggtggattgttacgtaag |
206 |
Q |
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| T |
783034 |
agaagctcctgctgcaccagttggttttactccacctgaactagacccaaacacaccttcaccaatctttggaggaagcactggtggattgttacgtaag |
783133 |
T |
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| Q |
207 |
gcacaagttgaagaattctatgtgatcacatgggagtcacctaaggaacaaatctttgagatgtcaactggtggtgcagccataatgagagaaggtccta |
306 |
Q |
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| T |
783134 |
gcacaagttgaagaattctatgtgatcacatgggagtcacctaaggaacaaatctttgagatgccaactggtggtgcagccataatgagagaaggtccta |
783233 |
T |
|
| Q |
307 |
gccttcttaagttagcaaggaaagaacagtgtttggctttaggaaatagattaaggtctaagtacaggattaagtatcagttttacagggtttttcctaa |
406 |
Q |
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| T |
783234 |
accttcttaagttagcaaggaaagaacagtgtttggctttaggaaatagattaaggtctaagtacaagattaagtatcagttttacagggtttttcctaa |
783333 |
T |
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| Q |
407 |
tggtgaggttcaatatttgtatcctaaggatggtgtgtaccctgagaaggttaaccctggtcgtca |
472 |
Q |
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| T |
783334 |
tggtgaggttcaatatttgcatcctaaggatggtgtgtaccctgagaaggttaaccctggtcgtca |
783399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 198 - 454
Target Start/End: Complemental strand, 47124089 - 47123833
Alignment:
| Q |
198 |
ttacgtaaggcacaagttgaagaattctatgtgatcacatgggagtcacctaaggaacaaatctttgagatgtcaactggtggtgcagccataatgagag |
297 |
Q |
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| T |
47124089 |
ttacgcaaggcccaagttgaagaatttcatgtgatcacatgggattcaccaaaagaacaaatttttgaaatagcaaatggtggtgcagccatcatgaggg |
47123990 |
T |
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| Q |
298 |
aaggtcctagccttcttaagttagcaaggaaagaacagtgtttggctttaggaaatagattaaggtctaagtacaggattaagtatcagttttacagggt |
397 |
Q |
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| T |
47123989 |
aaggtcccaatcttctcaaattagcaaggaaagaacaatgtttggctcttggaactaggttgaggtcaaagtacaagatcaagtaccaattctatagagt |
47123890 |
T |
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| Q |
398 |
ttttcctaatggtgaggttcaatatttgtatcctaaggatggtgtgtaccctgagaa |
454 |
Q |
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| T |
47123889 |
gtttcccaatggggaagttcaatacttgcatcccaaggatggtgtgtacccagagaa |
47123833 |
T |
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