View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20309_low_4 (Length: 416)
Name: NF20309_low_4
Description: NF20309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20309_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 8 - 401
Target Start/End: Original strand, 33901710 - 33902103
Alignment:
| Q |
8 |
cgaagaatataacatctcagctagacttttcattccaaaaaccaattacccaccaacccaaaaactccctcttcttgtttacatccatggtggtgctttc |
107 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33901710 |
cgaagaacataacatctcagctagacttttcattccaaaaaccaattacccaccaacccaaaaactccctcttcttgtttacatccatggtggtgctttc |
33901809 |
T |
|
| Q |
108 |
tgcattgaaactcctttttcaccaaactaccataactacctcaactctgttacttcacttgctaacgttattggtgtctctgttcattacagaagagcac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33901810 |
tgcattgaaactcctttttcaccaaactaccataactacctcaactctgttacttcacttgctaacgttattggtgtctctgttcattacagaagagcac |
33901909 |
T |
|
| Q |
208 |
cggaacatcctgttcccacgggtcatgaagattcatggcttgcactcaaatgggttgcttcacatgttggtggaaatggttctgatgaatggttgaatca |
307 |
Q |
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| T |
33901910 |
cggaacatcctgttcccacgggtcatgaagattcatggcttgcactcaaatgggttgcttcacatgttggtggaaatggttctgatgaatggttgaatca |
33902009 |
T |
|
| Q |
308 |
atatgcagattttgagaaagttttcttaggaggtgatagtgctggggctaatattgcacaccatttaagtattcaggtcgggaaggaaaatttg |
401 |
Q |
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| T |
33902010 |
atatgcagattttgagaaagttttcttaggaggtgatagtgctggggctaatattgcacaccatttaagtattcgggtcgggaaggaaaatttg |
33902103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 400
Target Start/End: Complemental strand, 33897141 - 33896749
Alignment:
| Q |
8 |
cgaagaatataacatctcagctagacttttcattccaaaaaccaattacccaccaacccaaaaactccctcttcttgtttacatccatggtggtgctttc |
107 |
Q |
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| T |
33897141 |
cgaagaacataacatctcagctagacttttcattcccaaaaccaatcacccaccaatccaaaaactccctgtctttgtctacttccatggtggtggtttc |
33897042 |
T |
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| Q |
108 |
tgcattgaaactcctttttcaccaaactaccataactacctcaactctgttacttcacttgctaacgttattggtgtctctgttcattacagaagagcac |
207 |
Q |
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||||||||||| ||||| |||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33897041 |
tgcattgaaacacctttctcaccatgctaccataactatcttaactctgttacttcacttgctaacgttattggtgtctctgttcattacagaagagcac |
33896942 |
T |
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| Q |
208 |
cggaacatcctgttcccacgggtcatgaagattcatggcttgcactcaaatgggttgcttcacatgttggtggaaatggttctgatgaatggttgaatca |
307 |
Q |
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| T |
33896941 |
cggaataccctgttcccattgctcatgaggattcatggctagcactcaaatgggttgcttcacatgttggtggaaatggttctgatgaatggttgaatca |
33896842 |
T |
|
| Q |
308 |
atatgcagattttgagaaagttttcttaggaggtgatagtgctggggctaatattgcacaccatttaagtattcaggtcgggaaggaaaattt |
400 |
Q |
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| T |
33896841 |
atatgcagattttgagaaagtgttcttaggaggtgatagtgctggtgctaatatttcacactatttgggtattcgggttgggaaggaaaattt |
33896749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 321
Target Start/End: Complemental strand, 33918568 - 33918307
Alignment:
| Q |
60 |
ccaacccaaaaactccctcttcttgtttacatccatggtggtgctttctgcattgaaactcctttttcaccaaactaccataactacctcaactctgtta |
159 |
Q |
| |
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|||| ||||||||||||||| ||||||||| |||||||||||| ||||||| | ||||| ||||| |||||| ||||| || | ||||||| | | |
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| T |
33918568 |
ccaaaccaaaaactccctctccttgtttacttccatggtggtggtttctgcgtagaaacacctttctcaccaccataccacaatttcctcaacaccatcg |
33918469 |
T |
|
| Q |
160 |
cttcacttgctaacgttattggtgtctctgttcattacagaagagcaccggaacatcctgttcccacgggtcatgaagattcatggcttgcactcaaatg |
259 |
Q |
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|||| ||||| ||||||| ||| || ||| ||||||||||||| || ||||| ||| |||| | | | |||||||||||| | | |||||||| |
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| T |
33918468 |
tttcaaaagctaatgttattgctgtttcagttgattacagaagagccccagaacaccctcttcctatagcatacgaagattcatggacttccctcaaatg |
33918369 |
T |
|
| Q |
260 |
ggttgcttcacatgttggtggaaatggttctgatgaatggttgaatcaatatgcagattttg |
321 |
Q |
| |
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||| | ||| ||| | |||||||||||||||||||||| | || | ||||||||||||| |
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| T |
33918368 |
ggtcgtttctcatttgcatggaaatggttctgatgaatggatcaaccgttatgcagattttg |
33918307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 370
Target Start/End: Complemental strand, 19643045 - 19642735
Alignment:
| Q |
60 |
ccaacccaaaaactccctcttcttgtttacatccatggtggtgctttctgcattgaaactcctttttcaccaaactaccataactacctcaactctgtta |
159 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| |||| ||||||| ||||||| | ||||| ||||| ||||||| ||||| || |||||||| | || |
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| T |
19643045 |
ccaaaccaaaaactccctctccttgtttacttccacggtggtggtttctgcgtagaaacacctttctcaccaacataccacaattacctcaataccattg |
19642946 |
T |
|
| Q |
160 |
cttcacttgctaacgttattggtgtctctgttcattacagaagagcaccggaacatcctgttcccacgggtcatgaagattcatggcttgcactcaaatg |
259 |
Q |
| |
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||| | ||||| || || | ||| || ||| ||||||||||||| || ||||||||| |||| | | | |||||||||||| | | |||||||| |
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| T |
19642945 |
tttctcaagctaatgtaatggctgtttcagttgattacagaagagccccagaacatcctcttcctatagcatacgaagattcatggacttccctcaaatg |
19642846 |
T |
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| Q |
260 |
ggttgcttcacatgttggtggaaatggttctgatgaatggttgaatcaatatgcagattttgagaaagttttcttaggaggtgatagtgctggggctaat |
359 |
Q |
| |
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||| ||||| ||| | |||||||||| |||||||||| | || || |||||||||| ||||||||||| | ||| || |||||||| || || |
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| T |
19642845 |
ggtggcttctcatttgcatggaaatggtcgtgatgaatggatcaacagttacgcagattttggaaaagttttctttgcaggagacagtgctggtgcaaac |
19642746 |
T |
|
| Q |
360 |
attgcacacca |
370 |
Q |
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||||||||||| |
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| T |
19642745 |
attgcacacca |
19642735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 17473368 - 17473420
Alignment:
| Q |
315 |
gattttgagaaagttttcttaggaggtgatagtgctggggctaatattgcaca |
367 |
Q |
| |
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|||||||| || |||||| | || |||||||||||||| |||||||||||||| |
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|
| T |
17473368 |
gattttgataaggttttcattggtggtgatagtgctggtgctaatattgcaca |
17473420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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