View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20309_low_5 (Length: 409)
Name: NF20309_low_5
Description: NF20309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20309_low_5 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Complemental strand, 43187017 - 43186627
Alignment:
| Q |
19 |
actgcatcaatgcttgatgaagctgctaattacctcaagtttcttagagcacaagtcaaagaactggagaatataggaaacaagattgatacagtgaata |
118 |
Q |
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| T |
43187017 |
actgcatcaatgcttgatgaagctgctaattacctcaagtttcttagagcacaagtcaaagaactggagaatataggaaacaagattgatacagtgaata |
43186918 |
T |
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| Q |
119 |
attgtcctcctacaaacatagccttctccttcaacccatcaatttccatgcaaaaccctaatgtcaacatccaatattcccatgattgaaatcattatta |
218 |
Q |
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| T |
43186917 |
attgtcctcctacaaacatagccttctccttcaacccatcaatttccatgcaaaaccctaatgtcaacatccaatattcccatgattgaaatcattatta |
43186818 |
T |
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| Q |
219 |
tcagaaatactagaaaaagttgaaatagcgacggaaattcagagacagaaaaatgcaaaattcgtctctattttcatcactaagtgttacagacgccaag |
318 |
Q |
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| T |
43186817 |
tcagaaatactagaaaaagttgaaatagcgacggaaattcagagacagaaaaatgcaaaattcgtctctattttcatcactaagtgttacagacgccaag |
43186718 |
T |
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| Q |
319 |
tatcgtgaccaattttaattttttgtctctaaattccgtcgttatttcaactttatctggtatatggaaagaaagatgtaaaaagagtcaa |
409 |
Q |
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| T |
43186717 |
tatcgtgaccaattttaattttttgtctctaaattccgtcgttatttcaactttatctggtatatggaaagaaagatgtaaaaagggtcaa |
43186627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 368
Target Start/End: Complemental strand, 3901439 - 3901399
Alignment:
| Q |
328 |
caattttaattttttgtctctaaattccgtcgttatttcaa |
368 |
Q |
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| T |
3901439 |
caattttattttttcgtctctaatttccgtcgttatttcaa |
3901399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 32295655 - 32295615
Alignment:
| Q |
231 |
gaaaaagttgaaatagcgacggaaattcagagacagaaaaa |
271 |
Q |
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| T |
32295655 |
gaaaaagttgaaataacgaaggaaattcagagacaaaaaaa |
32295615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 380
Target Start/End: Complemental strand, 32801085 - 32800933
Alignment:
| Q |
228 |
ctagaaaaagttgaaatagcgacggaaattcagagacagaaaaatgcaaaattcgtctctattttcatcactaagtgttacagacgccaagtatcgtgac |
327 |
Q |
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| T |
32801085 |
ctagaacaagttgaaatagctataaaaatttagagacggaaaa-tgcaaaactcgtctctaattttgtcgctaagtgttatcgacgtcaagtttagttac |
32800987 |
T |
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| Q |
328 |
caattttaattttt-tgtctctaaattccgtcgttatttcaactttatctggta |
380 |
Q |
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| T |
32800986 |
caattttactttttctgtatccatattttgttgttatttcaactttttctggta |
32800933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 288
Target Start/End: Complemental strand, 32722900 - 32722838
Alignment:
| Q |
226 |
tactagaaaaagttgaaatagcgacggaaattcagagacagaaaaatgcaaaattcgtctcta |
288 |
Q |
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| T |
32722900 |
tactagaaaaagttgaaatagtgacagaattttagagacggaaaaatatgaaattcgtctcta |
32722838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 5040694 - 5040653
Alignment:
| Q |
19 |
actgcatcaatgcttgatgaagctgctaattacctcaagttt |
60 |
Q |
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| T |
5040694 |
actgcttcaatgcttgatgaagctgcaaattatctcaagttt |
5040653 |
T |
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