View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20309_low_6 (Length: 392)

Name: NF20309_low_6
Description: NF20309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20309_low_6
NF20309_low_6
[»] chr3 (2 HSPs)
chr3 (18-384)||(11350016-11350400)
chr3 (142-178)||(51343289-51343325)
[»] scaffold0205 (1 HSPs)
scaffold0205 (153-318)||(22482-22647)
[»] chr8 (3 HSPs)
chr8 (138-215)||(5908786-5908863)
chr8 (133-218)||(13589616-13589701)
chr8 (133-198)||(33827817-33827882)
[»] chr2 (2 HSPs)
chr2 (137-182)||(36616861-36616906)
chr2 (137-182)||(36650615-36650660)
[»] chr4 (4 HSPs)
chr4 (137-177)||(45788567-45788607)
chr4 (138-221)||(41006372-41006455)
chr4 (137-215)||(20131053-20131131)
chr4 (137-177)||(55388275-55388315)
[»] chr7 (3 HSPs)
chr7 (137-215)||(45601616-45601694)
chr7 (137-197)||(1569174-1569234)
chr7 (139-175)||(41267308-41267344)
[»] chr1 (2 HSPs)
chr1 (137-215)||(43367694-43367772)
chr1 (133-177)||(6084153-6084197)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 11350400 - 11350016
Alignment:
Q  18 ggtgctactcttgtgtttctgtgaagtattttcaatttatttaattatacataaagcatacaacaacca----------gattttatctcactaaataac 107  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |          |||||||||||||||||||||    
T  11350400 ggtgctactcttgtgtttttgtgaagtattttcaatttatttaattatacataaagcatacaacaacaatcaacaattagattttatctcactaaataac 11350301  T
Q  108 cggttacatcgataatcatgtcataatattgttctatcataaattatattttgatttaactcattaatctttagacattttttaatagtttatattctgg 207  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||     
T  11350300 cggttacatcgataatcatgtcataatattgttttatcataaatcatattttaatttaactcattaatctttagatattttttaatagtttatattctga 11350201  T
Q  208 tttttctaagtttttccttgaatctagatatttgactatcttctatctgatttacactctttattacagaacttatatgtattctctcgactcgctaaaa 307  Q
    | | |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11350200 tctatctaagtttttctttgaatctagatatctgactatcttctatctgatttacactctttattacagaacttatatgtattctctcgagtcgctaaaa 11350101  T
Q  308 ccaccaaactctattttccatcatcttttagc--------ttacctcaattcttcaatattttcatttttaattatatttcatct 384  Q
    ||||||||||||||||||||||||||||||||        |||||| ||||||||||||||||||||||||||||||||||||||    
T  11350100 ccaccaaactctattttccatcatcttttagctataagtgttaccttaattcttcaatattttcatttttaattatatttcatct 11350016  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 51343289 - 51343325
Alignment:
Q  142 tatcataaattatattttgatttaactcattaatctt 178  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  51343289 tatcataaattatattttgatctaactcatcaatctt 51343325  T

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Target: scaffold0205 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 153 - 318
Target Start/End: Complemental strand, 22647 - 22482
Alignment:
Q  153 atattttgatttaactcattaatctttagacattttttaatagtttatattctggtttttctaagtttttccttgaatctagatatttgactatcttcta 252  Q
    ||||||||||||||||||||| |||  | | ||||| |||||||||||||| | ||||||| |||| |||| ||| |||||||||| | |||||||||||    
T  22647 atattttgatttaactcattattctccaaatattttctaatagtttatatttttgtttttccaagtctttctttgcatctagatatctaactatcttcta 22548  T
Q  253 tctgatttacactctttattacagaacttatatgtattctctcgactcgctaaaaccaccaaactc 318  Q
    | | || || ||||||||||||| || ||||||||||| |||||||||  | |||||||| |||||    
T  22547 tttaatctatactctttattacataatttatatgtattttctcgactcaatgaaaccacctaactc 22482  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 5908863 - 5908786
Alignment:
Q  138 gttctatcataaattatattttgatttaactcattaatctttagacattttttaatagtttatattctggtttttcta 215  Q
    |||||||||||||| ||||||||||  |||||||||||| || ||  |||||||||||||| | || | |||||||||    
T  5908863 gttctatcataaatcatattttgatccaactcattaatccttggatcttttttaatagtttctcttatagtttttcta 5908786  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 13589701 - 13589616
Alignment:
Q  133 atattgttctatcataaattatattttgatttaactcattaatctttagacattttttaatagtttatattctggtttttctaagt 218  Q
    ||||||||||||   |||| ||||||||||| |||||||||||||||| |  |||| ||||||||| | || | ||||||||||||    
T  13589701 atattgttctatttaaaatcatattttgattcaactcattaatctttaaatcttttctaatagtttctcttatagtttttctaagt 13589616  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 33827817 - 33827882
Alignment:
Q  133 atattgttctatcataaattatattttgatttaactcattaatctttagacattttttaatagttt 198  Q
    ||||||||||||||||||  |||||| |||  || |||||||||| || | |||||||||||||||    
T  33827817 atattgttctatcataaaccatatttagatccaattcattaatctataaatattttttaatagttt 33827882  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 36616906 - 36616861
Alignment:
Q  137 tgttctatcataaattatattttgatttaactcattaatctttaga 182  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||    
T  36616906 tgttctatcataaactatattttgatctaactcattaatctctaga 36616861  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 36650660 - 36650615
Alignment:
Q  137 tgttctatcataaattatattttgatttaactcattaatctttaga 182  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||    
T  36650660 tgttctatcataaactatattttgatctaactcattaatctctaga 36650615  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 45788607 - 45788567
Alignment:
Q  137 tgttctatcataaattatattttgatttaactcattaatct 177  Q
    |||| |||||||| |||||||||||||||||||||||||||    
T  45788607 tgttttatcataagttatattttgatttaactcattaatct 45788567  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 41006455 - 41006372
Alignment:
Q  138 gttctatcataaattatattttgatttaactcattaatctttagacattttttaatagtttatattctggtttttctaagtttt 221  Q
    ||||||||||| ||||| | || ||||||||||||||||| || | ||| ||||||||||||| || | |||| | ||||||||    
T  41006455 gttctatcatatattatttctttatttaactcattaatctctatatattatttaatagtttatcttatagtttgtgtaagtttt 41006372  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 20131053 - 20131131
Alignment:
Q  137 tgttctatcataaattatattttgatttaactcattaatctttagacattttttaatagtttatattctggtttttcta 215  Q
    ||||||||||||||| |||||| |||| |||||||||| |||||   ||||| ||||| ||||| || | |||||||||    
T  20131053 tgttctatcataaatcatatttagattaaactcattaacctttaattattttataataatttatcttatagtttttcta 20131131  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 55388275 - 55388315
Alignment:
Q  137 tgttctatcataaattatattttgatttaactcattaatct 177  Q
    ||||||||||||||| |||||| ||| ||||||||||||||    
T  55388275 tgttctatcataaatcatatttcgatctaactcattaatct 55388315  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 45601694 - 45601616
Alignment:
Q  137 tgttctatcataaattatattttgatttaactcattaatctttagacattttttaatagtttatattctggtttttcta 215  Q
    ||||||||||||||| ||||||||||  ||||||||||||| ||||  ||| ||||| |||| | || | |||||||||    
T  45601694 tgttctatcataaatcatattttgatccaactcattaatctctagatctttcttaatggtttctcttatagtttttcta 45601616  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 1569234 - 1569174
Alignment:
Q  137 tgttctatcataaattatattttgatttaactcattaatctttagacattttttaatagtt 197  Q
    ||||||||||||||  ||||||||||  ||||||||||||| ||||  ||| |||||||||    
T  1569234 tgttctatcataaaccatattttgatccaactcattaatctctagatctttcttaatagtt 1569174  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 41267344 - 41267308
Alignment:
Q  139 ttctatcataaattatattttgatttaactcattaat 175  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  41267344 ttctatcataaattatatttcgatttaaatcattaat 41267308  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 43367694 - 43367772
Alignment:
Q  137 tgttctatcataaattatattttgatttaactcattaatctttagacattttttaatagtttatattctggtttttcta 215  Q
    |||||||||| ||| |||||||| ||| ||||||||||||||||||  ||| || ||||||| | || | |||||||||    
T  43367694 tgttctatcaaaaactatatttttattcaactcattaatctttagatctttgttgatagtttcttttatagtttttcta 43367772  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 6084197 - 6084153
Alignment:
Q  133 atattgttctatcataaattatattttgatttaactcattaatct 177  Q
    ||||||||||||||||||  ||||||||||  |||||||||||||    
T  6084197 atattgttctatcataaaccatattttgatccaactcattaatct 6084153  T

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