View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2030_high_1 (Length: 717)

Name: NF2030_high_1
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2030_high_1
NF2030_high_1
[»] chr3 (1 HSPs)
chr3 (11-701)||(54267941-54268643)
[»] chr2 (1 HSPs)
chr2 (71-109)||(21132193-21132231)


Alignment Details
Target: chr3 (Bit Score: 638; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 11 - 701
Target Start/End: Original strand, 54267941 - 54268643
Alignment:
Q  11 cataggcataggcatagacatagtacaaaattatttatggtactgtagttagtacgtagtagtagttaccgcaggtcagtatacggaagtacagtacata 110  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54267941 cataggcataggcataggcatagtacaaaattatttatggtactgtagttagtacgtagtagtagttaccgcaggtcagtatacggaagtacagtacata 54268040  T
Q  111 tacatgaatgaagctactgctactagtgctaggtagtttagactttagacaagttgagcatgtggccaagaatctattcccataggaccaactactcctc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54268041 tacatgaatgaagctactgctactagtgctaggtagtttagactttagacaagttgagcatgtggccaagaatctattcccataggaccaactactcctc 54268140  T
Q  211 ctcctcctctactgttaatagttgatatgtccctaaattcagcatttgtagcagctcctgagaatgcaatcagatcatgagcagcaccatcca------- 303  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  54268141 ctcctcctctactgttaataattgatatgtccctaaattcagcatttgtagcagctcctgagaatgcaatcagatcatgagcagcaccatccatctccat 54268240  T
Q  304 -----tctccatctccacagggaataaagagttttcataattattattattgtcaataatccatcttaggttaagagcatcatctattgattttttctga 398  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||    
T  54268241 ctccatctccatctccacagggaataaagagttttcataattattattattgtcaataatccatcttatgttaagagcatcatctattgatttctgctga 54268340  T
Q  399 tcatagaaagtagcttctgtttttggaatggtctgcttcatggtgtaattttgttgtgacttgaagagtagttctgaagatggactattattgttgtttc 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54268341 tcatagaaagtagcttctgtttttggaatggtctgcttcatggtgtaattttgttgtgacttgaagagtagttctgaagatggactattattgttgtttc 54268440  T
Q  499 tggtggtgtgattgatcattgagaaggaaggttggaatgtaggtaatgggaaaatattatgagaatgtgagagtaattggtcattttgctctagttgtgt 598  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  54268441 tggtggtgtgattgatcattgagaaggaaggttggaatgtaggtaatgggaaaatattatgagaatgtgagagtaattggtcattttggtctagttgtgt 54268540  T
Q  599 aaatgaagttgcaagtaaaagtggtgtaggaggtaaacagcttttttgggggcttaaattaggattaccacctaaatgtccttgaatttggagtagtgaa 698  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54268541 aaatgaagttgcaagtaaaagtggtgtaggaggtaaacagcttttttgggggcttaaattaggattaccacctaaatgtccttgaatttggagtagtgaa 54268640  T
Q  699 ttt 701  Q
    |||    
T  54268641 ttt 54268643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 21132231 - 21132193
Alignment:
Q  71 agtagttaccgcaggtcagtatacggaagtacagtacat 109  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  21132231 agtagttaccgcaggtcagtataccgaagtacaatacat 21132193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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