View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2030_high_14 (Length: 408)
Name: NF2030_high_14
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2030_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 27570395 - 27570771
Alignment:
| Q |
18 |
ctaaatgcttgcagtcatgaatatatatagttaaaagaataattgagaaaccattggctacttgaatgattggtggagggatatactgtagtataggatt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27570395 |
ctaaatgcttgcagtcatgaatatatatagttaaaagaataattgagaaaccattggctacttgaatgattggtggaggtatatactgtagtataggatc |
27570494 |
T |
|
| Q |
118 |
aggatggagtcatagcatctacatggagacaagagcaacatatataagatcacatggtattgtcttagaggtctaccctaccataaaacagacctattca |
217 |
Q |
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||||||||||||| | ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27570495 |
aggatggagtcatggaatctacaaggagacaagagca---tatataagatcacatggtattgtcttagaggtctaccctaccataaaacagacctattca |
27570591 |
T |
|
| Q |
218 |
tggaagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaa |
317 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27570592 |
tggaatagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaa |
27570691 |
T |
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| Q |
318 |
ataaaataaaatgtggtttataatgtctcatgaacttgcgttcaacattcattatcttcttgcctcctaacactgtctct |
397 |
Q |
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| T |
27570692 |
ataaaataaaatgtggtttataatgtctcatgaacttgcgttcaacattcattatcttcttgcctcctaacactgtctct |
27570771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 27412467 - 27412166
Alignment:
| Q |
18 |
ctaaatgcttgcagtcatgaatatatatagttaaaagaataattgagaaaccattggctacttgaatgattggtggagggatatactgtagtataggatt |
117 |
Q |
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| T |
27412467 |
ctaaatgcttgcagccatgaatatatatagataaaagaata-ttgagaaaccattggctacttgaatgattggtggaggtttatactgtagtataggatc |
27412369 |
T |
|
| Q |
118 |
aggatggagtcatagcatctacatggagacaagagcaacatatataagatcacatggtattgtcttagaggtctaccctaccataaaacagacctattca |
217 |
Q |
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| T |
27412368 |
aggatggagtcatggaatctacaaggagacaagagca---tatataagatcacatggtattgtcttagaggtctaccctaccataaaacagacctattca |
27412272 |
T |
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| Q |
218 |
tggaagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaa |
317 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27412271 |
tggaatagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttacaaaa |
27412172 |
T |
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| Q |
318 |
ataaaa |
323 |
Q |
| |
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|||||| |
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| T |
27412171 |
ataaaa |
27412166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 41 - 362
Target Start/End: Complemental strand, 27422991 - 27422677
Alignment:
| Q |
41 |
tatatagttaaaagaataattgagaaaccattggctacttgaatgattggtggagggatatactgtagtataggattaggatggagtcatagcatctaca |
140 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||||| ||| ||||| | ||||||||||||||||||| ||||||||||||| | ||||||| |
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| T |
27422991 |
tatatagataaaagaatt-ttgagaaaccattggctacttgaattattagtggaagtatatactgtagtataggatcaggatggagtcatggaatctaca |
27422893 |
T |
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| Q |
141 |
tggagacaagagcaacatatataagatcacatggtattgtcttagaggtctaccctaccataaaacagacctattcatggaagagaaagtttaattgacc |
240 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27422892 |
aggagacaagagca---tatataagatcacatggtattgtcttagaggcctaccctaccataaaacagacctattcatggaatagaaagtttaattgacc |
27422796 |
T |
|
| Q |
241 |
ttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaataaaatgtggtttataa |
340 |
Q |
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|| ||| || ||||||| ||| ||| | ||||||| ||| ||||||||||||| | |||||| ||| ||||||||| ||||||||||||| ||| |
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| T |
27422795 |
ttcatatttgattaggatggcagggatcgcaaagttttgttctggtatgcaaattttgtggagtctgtcatgcaaaaat---ataaaatgtggttcatag |
27422699 |
T |
|
| Q |
341 |
tgtctcatgaacttgcgttcaa |
362 |
Q |
| |
|
|| |||||| |||| |||||| |
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| T |
27422698 |
tggctcatgttcttgtgttcaa |
27422677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 27415176 - 27415068
Alignment:
| Q |
224 |
agaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaa |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||| |||| |||||||||||||||||||||||||| || | |||||| ||||| | |
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| T |
27415176 |
agaaagtttaattgaccttgatacttaattaagaaggcaaggaccgcaaacttctgtcctggtatgcaaatatcatgaagcttgtcttg---taataata |
27415080 |
T |
|
| Q |
324 |
taaaatgtggtt |
335 |
Q |
| |
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|||||||||||| |
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|
| T |
27415079 |
taaaatgtggtt |
27415068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 320
Target Start/End: Complemental strand, 27425423 - 27425324
Alignment:
| Q |
221 |
aagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaata |
320 |
Q |
| |
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|||||||||||||||| |||||| |||||| |||| || ||| ||||| |||||||| || | |||||||||||||||||||||| |||| ||||||||| |
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| T |
27425423 |
aagagaaagtttaattaaccttgttacttatttagcaaggcagggaccgcaaagttccgttcaggtatgcaaatatcatggagtttgtctggcaaaaata |
27425324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 27566449 - 27566595
Alignment:
| Q |
192 |
accctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgca |
291 |
Q |
| |
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|||| |||| ||||||| ||||| ||| |||||||||||||||||||| || |||||| |||| |||||| ||||| ||||||||||| ||||||||| |
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| T |
27566449 |
accccaccaaaaaacaggcctatcaatgcaagagaaagtttaattgaccatgttacttatttagcaatgcagggaccgcaaagttctgttatggtatgca |
27566548 |
T |
|
| Q |
292 |
aatatcatggagttggtcttgcaaaaataaaataaaatgtggtttata |
339 |
Q |
| |
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||| | ||||| || ||| || ||||| | ||||||||||||||||| |
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| T |
27566549 |
aatttaatggaatttgtcctg-aaaaactatataaaatgtggtttata |
27566595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 27419963 - 27419887
Alignment:
| Q |
224 |
agaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatg |
300 |
Q |
| |
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||||||||||||||||||||||||||||||| ||| ||| ||||| | ||||||||| |||||| |||||||||||| |
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| T |
27419963 |
agaaagtttaattgaccttgatacttaattaagaaggcagggaccgcgaagttctgttctggtaagcaaatatcatg |
27419887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 27563705 - 27563763
Alignment:
| Q |
33 |
catgaatatatatagttaaaagaataattgagaaaccattggctacttgaatgattggtg |
92 |
Q |
| |
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||||||||||||||| |||||||||| ||| |||| ||||||||||||||||||||||| |
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| T |
27563705 |
catgaatatatatagataaaagaata-ttgcaaaactattggctacttgaatgattggtg |
27563763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 27566296 - 27566365
Alignment:
| Q |
18 |
ctaaatgcttgcagtcatgaatatatatagttaaaagaataattgagaaaccattggctacttgaatgatt |
88 |
Q |
| |
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||||||||||| | ||||||||||||||| ||||||||| ||||| |||| |||||||||||||||||| |
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| T |
27566296 |
ctaaatgcttgtaaccatgaatatatatagataaaagaat-attgaaaaactgttggctacttgaatgatt |
27566365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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