View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2030_high_21 (Length: 313)
Name: NF2030_high_21
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2030_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 6559951 - 6560109
Alignment:
| Q |
18 |
ttttcaagaatatcatgatagggtacattgaattcctatggttggaggatgacattgaaaatcaatttccagcctgtttaagaagcggaaacatgccatt |
117 |
Q |
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| T |
6559951 |
ttttcaagaatatcatgatagggtacattgaattcctatggttggaggatgacattgaaaatcaatttccagcctgtttaagaagcggaaacatgccatt |
6560050 |
T |
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| Q |
118 |
tttagtaacaaatacaaagatgattaaggaatatatataatctaacaaatggaacatta |
176 |
Q |
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| T |
6560051 |
tttagtaacaaatacaaagatgattaaggaatatatataatctaacaaatggaacatta |
6560109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 173 - 301
Target Start/End: Original strand, 6560144 - 6560272
Alignment:
| Q |
173 |
attaatttcttttaattatactagtttttgttgcttcattattcacatctcaaagaacattaatagaaagagtgaagactactcaaacagatgtttctat |
272 |
Q |
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| T |
6560144 |
attaatttcttttaattatactagtttttgttgcttcattattcacatctctaagaacattaatagaaagagttaagactactcaaacagatgtttctat |
6560243 |
T |
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| Q |
273 |
ctatggaaatcgatcaaccgatgatgatg |
301 |
Q |
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| T |
6560244 |
ctatggaaatcgatcaaccgatgatgatg |
6560272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 143
Target Start/End: Original strand, 8690468 - 8690507
Alignment:
| Q |
104 |
ggaaacatgccatttttagtaacaaatacaaagatgatta |
143 |
Q |
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| T |
8690468 |
ggaaacatgtcatttttagtaacaaatacaaggatgatta |
8690507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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