View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2030_high_22 (Length: 312)
Name: NF2030_high_22
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2030_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 32101062 - 32101287
Alignment:
| Q |
16 |
atgcaaatgatatgtgaaaagtttgaaattggatagagacagagagagtgaagtgtgatagtgaaaacttccaaaaatagaatggtagtaactagtaatt |
115 |
Q |
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| T |
32101062 |
atgcaaatgatatgtgaaaagtttgaaattggataaagacagagagagtgaagtgtgatagtgaaaacttccaaaaatagaatggtagtaactagtaatt |
32101161 |
T |
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| Q |
116 |
aagtagtgttgaga-ttttttgcagctaagttaatttgaattctgaaaaagcattcaaatttgtctgatttttcgaaatgagcaactccctctatagcag |
214 |
Q |
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| T |
32101162 |
aagtagtgttgagatttttttgcagctaagttaatttgaattctgaaaaagcattcaaatttgtctgatttttcgaaatgagcaactccctctatagcag |
32101261 |
T |
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| Q |
215 |
ccgtcctcttcaagcatataatgctc |
240 |
Q |
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| T |
32101262 |
ccgtcctcttcaagcatataatgctc |
32101287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 32101362 - 32101399
Alignment:
| Q |
269 |
taattgctaatttgtaaaaattaagaactaatttgatc |
306 |
Q |
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| T |
32101362 |
taattgctaatttgtaaaaattaagaactaatttgatc |
32101399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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