View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2030_high_25 (Length: 300)
Name: NF2030_high_25
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2030_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 3286590 - 3286308
Alignment:
| Q |
1 |
agcaagcaaaaggatagaaaacccaaagggggatttaacggatttgatgttaagagcgagtggtgctcctgcagagagagctgcaaccaatactgataat |
100 |
Q |
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| T |
3286590 |
agcaagcaaaaggatagaaaacccaaagggggatttaacggatttgatgttaagagcgagtggtgctcctgcagagagagctgcaaccaatactgatagt |
3286491 |
T |
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| Q |
101 |
ggaggcaaaaacggccgaatagcattacaaatattagggtagaatctg-tnnnnnnncaaattaattcttctatgagataccatcttttaagagaacact |
199 |
Q |
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| T |
3286490 |
ggaggcaaaaacggccgaatagcattacaaatattagggtagaatctgcaaaaaaaacaaattaattcttctatgagataccatcttttaagagaacact |
3286391 |
T |
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| Q |
200 |
tatgttaacaaatttatttgagaaatgtagttttaccgatttaaaagtagaccaaatgtaataggaacaagcacaatttgagt |
282 |
Q |
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| T |
3286390 |
tatgttaacaaatttatttgagaaatgtagttttaccgatttaaaagtagaccaaatgtaataggaacaagcacaatttgagt |
3286308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 32721695 - 32721786
Alignment:
| Q |
184 |
cttttaagagaacacttatgttaacaaatttatttgagaaatgtagttttaccgatttaaaagtagaccaaatgtaataggaacaagcacaa |
275 |
Q |
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| T |
32721695 |
cttttaagaaaacactaatgttaacaaatccttctgagaaatatagtattacggatttagaagtaaactaaatgtaataggaacaagcacaa |
32721786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 32730150 - 32730241
Alignment:
| Q |
184 |
cttttaagagaacacttatgttaacaaatttatttgagaaatgtagttttaccgatttaaaagtagaccaaatgtaataggaacaagcacaa |
275 |
Q |
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| T |
32730150 |
cttttaagaaaacactaatgttaacaaatccttctgagaaatatagtattacggatttagaagtaaactaaatgtaataggaacaagcacaa |
32730241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 32721558 - 32721642
Alignment:
| Q |
46 |
gatgttaagagcgagtggtgctcctgcagagagagctgcaaccaatactgataatggaggcaaaaacggccgaatagcattacaa |
130 |
Q |
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| T |
32721558 |
gatgtcaagagcaagtggtgctccagcagagagagctgctaccagtacagatagtggaggcaaaaacagtcaaatatcattacaa |
32721642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 32730013 - 32730097
Alignment:
| Q |
46 |
gatgttaagagcgagtggtgctcctgcagagagagctgcaaccaatactgataatggaggcaaaaacggccgaatagcattacaa |
130 |
Q |
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| T |
32730013 |
gatgtcaagagcaagtggtgctccagcagagagagctgctaccagtacagatagtggaggcaaaaacagtcaaatatcattacaa |
32730097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 32746904 - 32746971
Alignment:
| Q |
47 |
atgttaagagcgagtggtgctcctgcagagagagctgcaaccaatactgataatggaggcaaaaacgg |
114 |
Q |
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| T |
32746904 |
atgttaagagcaagtggtgctccagcagagagagctgctaccaatacagatagttaaggcaaaaacgg |
32746971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 32748031 - 32748112
Alignment:
| Q |
50 |
ttaagagcgagtggtgctcctgcagagagagctgcaaccaatactgataatggaggcaaaaacggccgaatagcattacaaa |
131 |
Q |
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| T |
32748031 |
ttaagagcaagtggtgctccagcacagatagctgccaccaacactgacagtagaggcaaaaatggtcgaaaagcgttacaaa |
32748112 |
T |
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