View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2030_high_27 (Length: 295)

Name: NF2030_high_27
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2030_high_27
NF2030_high_27
[»] chr1 (3 HSPs)
chr1 (25-277)||(2997847-2998100)
chr1 (43-81)||(16182265-16182303)
chr1 (35-71)||(49907357-49907393)
[»] chr5 (5 HSPs)
chr5 (34-93)||(885114-885173)
chr5 (35-93)||(29499230-29499288)
chr5 (34-100)||(30208957-30209023)
chr5 (35-80)||(8241118-8241163)
chr5 (48-93)||(39804416-39804461)
[»] chr2 (9 HSPs)
chr2 (35-94)||(14518338-14518397)
chr2 (49-100)||(36748934-36748985)
chr2 (34-100)||(39635348-39635414)
chr2 (30-94)||(18254643-18254707)
chr2 (49-100)||(7717576-7717627)
chr2 (34-93)||(32857903-32857962)
chr2 (41-71)||(10166211-10166241)
chr2 (61-103)||(43842167-43842209)
chr2 (36-80)||(23984181-23984225)
[»] chr7 (3 HSPs)
chr7 (36-93)||(21177598-21177654)
chr7 (50-92)||(23754986-23755028)
chr7 (36-96)||(42433050-42433110)
[»] chr6 (2 HSPs)
chr6 (41-82)||(1765060-1765101)
chr6 (36-94)||(361217-361275)
[»] chr3 (4 HSPs)
chr3 (30-110)||(29559626-29559706)
chr3 (39-100)||(26880225-26880285)
chr3 (34-94)||(40739167-40739227)
chr3 (34-94)||(49028899-49028959)
[»] scaffold0003 (1 HSPs)
scaffold0003 (36-75)||(315722-315761)
[»] chr8 (5 HSPs)
chr8 (34-100)||(34873134-34873200)
chr8 (49-94)||(13105145-13105190)
chr8 (30-75)||(32630318-32630363)
chr8 (35-100)||(36035136-36035201)
chr8 (30-74)||(11406631-11406675)
[»] chr4 (2 HSPs)
chr4 (36-78)||(45227086-45227127)
chr4 (36-80)||(624548-624592)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 25 - 277
Target Start/End: Original strand, 2997847 - 2998100
Alignment:
Q  25 accatgtaatctagtggtttgagttcacacattttaaatatggagaagtggtgtgtttgaagttcgaaccacgacctttatatatatcatacattatcca 124  Q
    ||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2997847 accatgtaatctagtggtttgagctcacgcattttaaatatgaagaagtggtgtgtttgaagttcgaaccacgacctttatatatatcatacattatcca 2997946  T
Q  125 tatcaagtagccnnnnnnnnnn-aacattgtcatttaaatgtttgtcagtttgtccatatatatgaagatgtctctggttaccagctcaatttgcaaaag 223  Q
    ||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2997947 tatcaagtagcctatttttttttaacattgtcatttaaatgtttgtcagtttgtccatatatatgaagatgtctctggttaccagctcaatttgcaaaag 2998046  T
Q  224 tataaggtgttgttctttagtagaaatgtgattcgagatctttggaggtaaata 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2998047 tataaggtgttgttctttagtagaaatgtgattcgagatctttggaggtaaata 2998100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 16182303 - 16182265
Alignment:
Q  43 ttgagttcacacattttaaatatggagaagtggtgtgtt 81  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  16182303 ttgagttcacacattttaaatgtggagaagtggggtgtt 16182265  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 49907393 - 49907357
Alignment:
Q  35 ctagtggtttgagttcacacattttaaatatggagaa 71  Q
    ||||||| | |||||||||||||||||||||||||||    
T  49907393 ctagtggctggagttcacacattttaaatatggagaa 49907357  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 885114 - 885173
Alignment:
Q  34 tctagtggtttgagttcacacattttaaatatggagaagtggtgtgtttgaagttcgaac 93  Q
    |||||||||| ||| ||||||||||||||||||||||||||  ||||| | |||||||||    
T  885114 tctagtggttggagctcacacattttaaatatggagaagtgaggtgttcggagttcgaac 885173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 29499288 - 29499230
Alignment:
Q  35 ctagtggtttgagttcacacattttaaatatggagaagtggtgtgtttgaagttcgaac 93  Q
    ||||||||| ||| | |||||||||||||||||||| || | ||||||| |||||||||    
T  29499288 ctagtggttagagcttacacattttaaatatggagaggtagggtgtttggagttcgaac 29499230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 30208957 - 30209023
Alignment:
Q  34 tctagtggtttgagttcacacattttaaatatggagaagtggtgtgtttgaagttcgaaccacgacc 100  Q
    |||| ||||| ||| ||||||||||||||||||||||||||| |||   || ||||||||| |||||    
T  30208957 tctactggttggagatcacacattttaaatatggagaagtggggtgcccgaggttcgaaccccgacc 30209023  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 8241163 - 8241118
Alignment:
Q  35 ctagtggtttgagttcacacattttaaatatggagaagtggtgtgt 80  Q
    ||||||||| ||| ||||||||||||||| ||||||||||| ||||    
T  8241163 ctagtggttagagctcacacattttaaatgtggagaagtggggtgt 8241118  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 39804416 - 39804461
Alignment:
Q  48 ttcacacattttaaatatggagaagtggtgtgtttgaagttcgaac 93  Q
    |||||||||||||||| | ||||||||| |||| ||||||||||||    
T  39804416 ttcacacattttaaatgtagagaagtggagtgtctgaagttcgaac 39804461  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 14518397 - 14518338
Alignment:
Q  35 ctagtggtttgagttcacacattttaaatatggagaagtggtgtgtttgaagttcgaacc 94  Q
    ||||||| | ||| ||||||||||||||||||||||||||| ||||| || |||||||||    
T  14518397 ctagtggctggagctcacacattttaaatatggagaagtggagtgttcgaggttcgaacc 14518338  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 36748985 - 36748934
Alignment:
Q  49 tcacacattttaaatatggagaagtggtgtgtttgaagttcgaaccacgacc 100  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||| |||||    
T  36748985 tcacacattttaaatgtggagaagtggagtgttcgaagttcgaaccccgacc 36748934  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 39635414 - 39635348
Alignment:
Q  34 tctagtggtttgagttcacacattttaaatatggagaagtggtgtgtttgaagttcgaaccacgacc 100  Q
    |||||||| | ||| ||||||||||||||| ||||||||||| |||| || |||||||||| |||||    
T  39635414 tctagtggctggagatcacacattttaaatgtggagaagtggagtgtctggagttcgaaccccgacc 39635348  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 18254707 - 18254643
Alignment:
Q  30 gtaatctagtggtttgagttcacacattttaaatatggagaagtggtgtgtttgaagttcgaacc 94  Q
    |||| ||||||||| ||| ||||||||||||||| || |||||||| |||| || ||||||||||    
T  18254707 gtaacctagtggttggagctcacacattttaaatgtgaagaagtggggtgtctggagttcgaacc 18254643  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 7717576 - 7717627
Alignment:
Q  49 tcacacattttaaatatggagaagtggtgtgtttgaagttcgaaccacgacc 100  Q
    ||||||||||||||| ||||||||||| ||||  |||||||||||| |||||    
T  7717576 tcacacattttaaatgtggagaagtggagtgtccgaagttcgaaccccgacc 7717627  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 32857903 - 32857962
Alignment:
Q  34 tctagtggtttgagttcacacattttaaatatggagaagtggtgtgtttgaagttcgaac 93  Q
    |||||||||||||| |||||||| |||||| ||||||||| | |||||||  ||||||||    
T  32857903 tctagtggtttgagctcacacatattaaatgtggagaagttgggtgtttgtggttcgaac 32857962  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 71
Target Start/End: Complemental strand, 10166241 - 10166211
Alignment:
Q  41 gtttgagttcacacattttaaatatggagaa 71  Q
    |||||||||||||||||||||||||||||||    
T  10166241 gtttgagttcacacattttaaatatggagaa 10166211  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 43842209 - 43842167
Alignment:
Q  61 aatatggagaagtggtgtgtttgaagttcgaaccacgaccttt 103  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||    
T  43842209 aatatggagaagtggggtgtttggagttcgaaccccgaccttt 43842167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 23984181 - 23984225
Alignment:
Q  36 tagtggtttgagttcacacattttaaatatggagaagtggtgtgt 80  Q
    |||||| | ||||||||||||||||||| ||||||||||| ||||    
T  23984181 tagtggctggagttcacacattttaaatgtggagaagtggggtgt 23984225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 21177598 - 21177654
Alignment:
Q  36 tagtggtttgagttcacacattttaaatatggagaagtggtgtgtttgaagttcgaac 93  Q
    |||||| | ||||||||||||||||| ||||||||||||| |||||||| ||||||||    
T  21177598 tagtggatagagttcacacattttaa-tatggagaagtggagtgtttgaggttcgaac 21177654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 23754986 - 23755028
Alignment:
Q  50 cacacattttaaatatggagaagtggtgtgtttgaagttcgaa 92  Q
    |||||||||||||||||||||||||| |||| ||| |||||||    
T  23754986 cacacattttaaatatggagaagtggggtgtctgaggttcgaa 23755028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 42433050 - 42433110
Alignment:
Q  36 tagtggtttgagttcacacattttaaatatggagaagtggtgtgtttgaagttcgaaccac 96  Q
    |||||||| ||| | ||||||||||||||||||||| ||  |||| ||| |||||||||||    
T  42433050 tagtggttagagcttacacattttaaatatggagaaatgaagtgtctgaggttcgaaccac 42433110  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 1765101 - 1765060
Alignment:
Q  41 gtttgagttcacacattttaaatatggagaagtggtgtgttt 82  Q
    ||||||||||||||||||||||||| ||||||||| ||||||    
T  1765101 gtttgagttcacacattttaaatatagagaagtggagtgttt 1765060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 361275 - 361217
Alignment:
Q  36 tagtggtttgagttcacacattttaaatatggagaagtggtgtgtttgaagttcgaacc 94  Q
    |||||| | ||| ||||| ||||||||||||||||||||| |||| || ||||||||||    
T  361275 tagtggctagagctcacatattttaaatatggagaagtggggtgtctggagttcgaacc 361217  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 29559626 - 29559706
Alignment:
Q  30 gtaatctagtggtttgagttcacacattttaaatatggagaagtggtgtgtttgaagttcgaaccacgacctttatatata 110  Q
    |||||||||||| | ||  ||||||||||||||| ||||||||||| ||||  ||||||| |||| |||||| || |||||    
T  29559626 gtaatctagtggatagaactcacacattttaaatgtggagaagtggggtgtccgaagttcaaaccccgacctctacatata 29559706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 26880285 - 26880225
Alignment:
Q  39 tggtttgagttcacacattttaaatatggagaagtggtgtgtttgaagttcgaaccacgacc 100  Q
    ||||| ||| |||||||||| |||| ||||||||||| |||| ||||||||||||| |||||    
T  26880285 tggttagagctcacacattt-aaatgtggagaagtggggtgtctgaagttcgaaccccgacc 26880225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 40739167 - 40739227
Alignment:
Q  34 tctagtggtttgagttcacacattttaaatatggagaagtggtgtgtttgaagttcgaacc 94  Q
    |||||||| | ||| |||||||||||||| |||||||||||  ||||  ||||||||||||    
T  40739167 tctagtggctagagctcacacattttaaacatggagaagtgaggtgtccgaagttcgaacc 40739227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 49028899 - 49028959
Alignment:
Q  34 tctagtggtttgagttcacacattttaaatatggagaagtggtgtgtttgaagttcgaacc 94  Q
    |||||||||| ||| |||| |||||||||| ||||||||||| ||||| |  |||||||||    
T  49028899 tctagtggttggagctcacgcattttaaatgtggagaagtggagtgttcggggttcgaacc 49028959  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 315761 - 315722
Alignment:
Q  36 tagtggtttgagttcacacattttaaatatggagaagtgg 75  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  315761 tagtggttagagttcacacattttaaatgtggagaagtgg 315722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 34873200 - 34873134
Alignment:
Q  34 tctagtggtttgagttcacacattttaaatatggagaagtggtgtgtttgaagttcgaaccacgacc 100  Q
    |||||||| | ||| ||||||||||||||| ||||||||||| ||||  || ||||||||| |||||    
T  34873200 tctagtggctggagctcacacattttaaatgtggagaagtggggtgtccgaggttcgaaccccgacc 34873134  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 13105190 - 13105145
Alignment:
Q  49 tcacacattttaaatatggagaagtggtgtgtttgaagttcgaacc 94  Q
    ||||||||||||||| ||||||||||| |||| ||| |||||||||    
T  13105190 tcacacattttaaatgtggagaagtggggtgtctgaggttcgaacc 13105145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 32630363 - 32630318
Alignment:
Q  30 gtaatctagtggtttgagttcacacattttaaatatggagaagtgg 75  Q
    |||||||||||||| ||  ||||||||| |||||||||||||||||    
T  32630363 gtaatctagtggttggaactcacacattataaatatggagaagtgg 32630318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 36035136 - 36035201
Alignment:
Q  35 ctagtggtttgagttcacacattttaaatatggagaagtggtgtgtttgaagttcgaaccacgacc 100  Q
    ||||||| | ||| ||||||||||||||| ||||||||||| ||||  || ||||||||| |||||    
T  36035136 ctagtggctggagctcacacattttaaatgtggagaagtggggtgtccgaggttcgaaccccgacc 36035201  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 11406631 - 11406675
Alignment:
Q  30 gtaatctagtggtttgagttcacacattttaaatatggagaagtg 74  Q
    ||||| ||||||||  |||||||||||||||||| ||||||||||    
T  11406631 gtaatttagtggttaaagttcacacattttaaatgtggagaagtg 11406675  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 45227086 - 45227127
Alignment:
Q  36 tagtggtttgagttcacacattttaaatatggagaagtggtgt 78  Q
    |||||||| ||||| ||||||||||||||||||||||||||||    
T  45227086 tagtggttggagtt-acacattttaaatatggagaagtggtgt 45227127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 624592 - 624548
Alignment:
Q  36 tagtggtttgagttcacacattttaaatatggagaagtggtgtgt 80  Q
    |||||||| ||| ||||||||||||||| ||||||||||| ||||    
T  624592 tagtggttagagctcacacattttaaatgtggagaagtggggtgt 624548  T

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