View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2030_high_3 (Length: 560)
Name: NF2030_high_3
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2030_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 46303393 - 46302852
Alignment:
| Q |
1 |
cagtaagagcatgactggcgttatcacagaaaactccacgccatgagcaaaagtcatcattgtgtacatcatcccagtcaaggagaacgtcagctatgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46303393 |
cagtaagagcatgactggcgttatcacagaaaactccacgccatgagcaaaagtcatcattgtgtacatcatcccagtcaaggagaacgtcagctatgtt |
46303294 |
T |
|
| Q |
101 |
gttgaaggaagacttcattgccattaatgcttgtcctaatgcatttaccaaacattcatcaccttaatcaggtagtattaatctcaaacataggatcttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46303293 |
gttgaaggaagacttcattgccattaatgcttgtcctaatgcatttaccaaacattcatcaccttaatcaggtagtattaatctcaaacataggatcttt |
46303194 |
T |
|
| Q |
201 |
taatatcattattatagcacatattgtgtatagttgcaaactgcaccatcagggaaaaaatgattgacagatataaaagaacaagtaaaaaggaaaatta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46303193 |
taatatcattattatagcacatattgtgtatagttgcaaactgcaccatcagggaaaaaatgattgacagatataaaagaacaagtaaaaaggaaaatta |
46303094 |
T |
|
| Q |
301 |
ctaatacatgcatattttttgactcaatgcatacacatccttggaaaaaataggcagtttaattaatcactatgcttgtgcaaattggaagtcaaaagca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46303093 |
ctaatacatgcatattttttgactcaatgcatacacatccttggaaaaaataggcagtttaattaatcactatgcttgtgcaaattggaagtcaaaagca |
46302994 |
T |
|
| Q |
401 |
gcacctcacattgacaaaatattggattaaaggaaaattttcctttaaattacactatttatatcaataaacaaaattacactataaaattctaattgca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46302993 |
gcacctcacattgacaaaatattggattaaaggaaaattttcctttaaattacactatttatatcaataatcaaaattacactataaaattctaattgca |
46302894 |
T |
|
| Q |
501 |
gtaaactatatagacattgctgttaatgacatcattctgaac |
542 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46302893 |
gtaaactatatagacattgctgttaatgacatcattctgaac |
46302852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University