View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2030_high_30 (Length: 256)

Name: NF2030_high_30
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2030_high_30
NF2030_high_30
[»] chr1 (31 HSPs)
chr1 (13-236)||(2997615-2997838)
chr1 (21-111)||(8741487-8741577)
chr1 (21-96)||(45180488-45180562)
chr1 (22-119)||(47469041-47469137)
chr1 (22-119)||(36666544-36666640)
chr1 (21-85)||(18512541-18512605)
chr1 (35-119)||(18607789-18607873)
chr1 (22-126)||(34562755-34562858)
chr1 (22-113)||(11333676-11333766)
chr1 (22-113)||(11491697-11491787)
chr1 (21-92)||(12613210-12613281)
chr1 (23-85)||(13763801-13763863)
chr1 (23-92)||(3229682-3229751)
chr1 (22-119)||(18216912-18217009)
chr1 (22-119)||(21265662-21265759)
chr1 (6-119)||(24874977-24875089)
chr1 (22-119)||(31401213-31401309)
chr1 (23-119)||(44579888-44579985)
chr1 (22-126)||(23991232-23991335)
chr1 (17-104)||(44245375-44245462)
chr1 (22-96)||(27579441-27579515)
chr1 (21-119)||(37662523-37662621)
chr1 (6-119)||(6893188-6893301)
chr1 (22-119)||(11215007-11215104)
chr1 (38-119)||(16997242-16997323)
chr1 (6-99)||(26909822-26909914)
chr1 (22-119)||(34058220-34058317)
chr1 (21-58)||(42735948-42735985)
chr1 (22-119)||(48638538-48638635)
chr1 (26-122)||(2556559-2556655)
chr1 (29-85)||(8780808-8780864)
[»] chr8 (28 HSPs)
chr8 (6-119)||(13059128-13059241)
chr8 (21-119)||(42023417-42023514)
chr8 (7-85)||(37708731-37708809)
chr8 (35-119)||(481017-481101)
chr8 (22-125)||(5328534-5328637)
chr8 (22-112)||(17499057-17499147)
chr8 (22-119)||(12770374-12770470)
chr8 (8-85)||(33810680-33810757)
chr8 (25-113)||(24517307-24517395)
chr8 (22-122)||(34894372-34894472)
chr8 (22-113)||(3227246-3227337)
chr8 (21-112)||(13105104-13105195)
chr8 (7-82)||(31024337-31024412)
chr8 (35-112)||(38283137-38283214)
chr8 (8-113)||(41272106-41272210)
chr8 (21-85)||(8183360-8183424)
chr8 (7-71)||(44053392-44053456)
chr8 (22-85)||(257579-257642)
chr8 (22-85)||(658278-658341)
chr8 (22-85)||(844014-844077)
chr8 (22-85)||(13748986-13749049)
chr8 (35-98)||(22717818-22717881)
chr8 (7-85)||(36035131-36035209)
chr8 (22-112)||(38955161-38955251)
chr8 (22-119)||(2908059-2908155)
chr8 (22-99)||(11231446-11231522)
chr8 (35-119)||(25890384-25890468)
chr8 (21-85)||(34873126-34873190)
[»] chr4 (26 HSPs)
chr4 (22-112)||(624493-624583)
chr4 (25-119)||(55260283-55260377)
chr4 (7-85)||(36099135-36099213)
chr4 (22-112)||(49264539-49264628)
chr4 (22-119)||(8965100-8965197)
chr4 (22-119)||(51890803-51890899)
chr4 (23-119)||(33933707-33933803)
chr4 (35-119)||(42044026-42044110)
chr4 (22-112)||(3036022-3036112)
chr4 (7-85)||(30305839-30305917)
chr4 (21-119)||(55055922-55056019)
chr4 (34-99)||(11294817-11294882)
chr4 (23-120)||(21935482-21935579)
chr4 (23-91)||(5440517-5440585)
chr4 (35-119)||(45139861-45139945)
chr4 (21-124)||(29406358-29406460)
chr4 (23-85)||(28715730-28715792)
chr4 (22-119)||(11375856-11375953)
chr4 (23-92)||(17435448-17435517)
chr4 (22-119)||(31852355-31852451)
chr4 (22-119)||(40051628-40051725)
chr4 (26-111)||(43539826-43539911)
chr4 (22-119)||(49901488-49901585)
chr4 (55-99)||(29584669-29584713)
chr4 (23-91)||(37242683-37242750)
chr4 (22-122)||(41137887-41137987)
[»] chr5 (12 HSPs)
chr5 (23-119)||(39799998-39800094)
chr5 (21-91)||(7443373-7443443)
chr5 (7-85)||(3740994-3741072)
chr5 (21-119)||(4067988-4068085)
chr5 (22-112)||(6167223-6167315)
chr5 (22-119)||(8241056-8241153)
chr5 (7-122)||(3821373-3821489)
chr5 (7-85)||(17891810-17891889)
chr5 (22-125)||(32550176-32550278)
chr5 (22-85)||(41930145-41930208)
chr5 (23-85)||(23937901-23937963)
chr5 (22-91)||(25460747-25460816)
[»] chr7 (21 HSPs)
chr7 (21-112)||(28799986-28800078)
chr7 (17-99)||(22774066-22774147)
chr7 (21-102)||(4232569-4232650)
chr7 (23-85)||(18503448-18503510)
chr7 (22-115)||(1563706-1563799)
chr7 (21-99)||(10901670-10901749)
chr7 (22-113)||(36931985-36932075)
chr7 (7-85)||(13702065-13702143)
chr7 (22-111)||(3532592-3532681)
chr7 (21-85)||(46645749-46645813)
chr7 (22-98)||(47437961-47438036)
chr7 (21-92)||(27788302-27788372)
chr7 (21-92)||(27791458-27791528)
chr7 (25-119)||(9877237-9877331)
chr7 (25-119)||(23102528-23102622)
chr7 (22-119)||(4960790-4960887)
chr7 (55-104)||(27425109-27425158)
chr7 (22-119)||(30388474-30388571)
chr7 (30-99)||(42435195-42435264)
chr7 (22-119)||(45284787-45284883)
chr7 (49-85)||(38778701-38778737)
[»] chr2 (20 HSPs)
chr2 (7-111)||(2145687-2145791)
chr2 (24-112)||(34125759-34125846)
chr2 (35-119)||(20919616-20919700)
chr2 (22-119)||(33228900-33228997)
chr2 (35-112)||(44558016-44558092)
chr2 (22-122)||(1844820-1844920)
chr2 (36-119)||(11949977-11950060)
chr2 (22-85)||(18862292-18862355)
chr2 (6-85)||(32854572-32854651)
chr2 (21-99)||(3596276-3596353)
chr2 (7-85)||(5947906-5947984)
chr2 (7-85)||(20497147-20497225)
chr2 (7-85)||(23984175-23984253)
chr2 (20-53)||(10463159-10463192)
chr2 (22-119)||(11050724-11050821)
chr2 (22-111)||(32189970-32190058)
chr2 (22-119)||(36182648-36182745)
chr2 (35-99)||(1964379-1964443)
chr2 (7-71)||(15939343-15939407)
chr2 (21-85)||(18254629-18254693)
[»] chr3 (36 HSPs)
chr3 (7-85)||(46767383-46767461)
chr3 (21-119)||(3614046-3614144)
chr3 (21-119)||(14795117-14795215)
chr3 (6-113)||(38949686-38949792)
chr3 (18-112)||(19222550-19222643)
chr3 (6-92)||(25883939-25884025)
chr3 (7-85)||(27329884-27329962)
chr3 (7-85)||(51879135-51879213)
chr3 (33-119)||(55383866-55383952)
chr3 (22-119)||(24303396-24303492)
chr3 (22-99)||(28951742-28951818)
chr3 (22-122)||(41936374-41936474)
chr3 (22-104)||(5173978-5174059)
chr3 (22-119)||(17602643-17602740)
chr3 (22-119)||(32776217-32776314)
chr3 (22-111)||(34898734-34898823)
chr3 (22-99)||(49443391-49443467)
chr3 (22-122)||(26942756-26942856)
chr3 (8-112)||(32401504-32401606)
chr3 (21-85)||(44625191-44625255)
chr3 (22-85)||(4860201-4860264)
chr3 (22-113)||(39719947-39720038)
chr3 (34-125)||(48515364-48515455)
chr3 (21-127)||(16886580-16886686)
chr3 (25-99)||(43280094-43280167)
chr3 (22-119)||(44764728-44764822)
chr3 (35-113)||(47098528-47098606)
chr3 (22-112)||(53432704-53432794)
chr3 (22-119)||(32256521-32256618)
chr3 (22-111)||(34102578-34102667)
chr3 (7-84)||(41710624-41710701)
chr3 (22-119)||(47098738-47098835)
chr3 (22-119)||(48739711-48739808)
chr3 (75-112)||(49375701-49375738)
chr3 (19-71)||(8497073-8497125)
chr3 (22-126)||(52984009-52984113)
[»] scaffold0154 (1 HSPs)
scaffold0154 (21-122)||(28788-28888)
[»] chr6 (10 HSPs)
chr6 (32-111)||(13436558-13436637)
chr6 (21-92)||(32670020-32670091)
chr6 (6-119)||(2251844-2251958)
chr6 (7-85)||(32621534-32621612)
chr6 (8-85)||(32616424-32616501)
chr6 (21-85)||(18904305-18904369)
chr6 (22-111)||(24319027-24319115)
chr6 (21-85)||(1368153-1368217)
chr6 (7-71)||(3709913-3709977)
chr6 (21-85)||(32142002-32142066)
[»] scaffold0088 (1 HSPs)
scaffold0088 (22-119)||(10793-10890)
[»] scaffold0003 (1 HSPs)
scaffold0003 (26-85)||(315689-315748)
[»] scaffold0519 (1 HSPs)
scaffold0519 (22-99)||(2930-3006)
[»] scaffold0250 (1 HSPs)
scaffold0250 (35-119)||(15011-15095)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 2997615 - 2997838
Alignment:
Q  13 taggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgag 112  Q
    |||||| ||||||||||| ||||||||| | |||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||| ||||||||||||    
T  2997615 taggggtcggagctcacatattttaaatatggagatgtggggtgtcaggggttcgaacccctgcccctgcataaattatgcaatgtccctactaactgag 2997714  T
Q  113 caaagcttacaggacattaaagtgaatgtttctaataactaaagcgtgtattttcataaaaatgaaatagtttctaaaaattatataaacatttaaaggg 212  Q
    ||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2997715 caaagctcacgagacattaaagtgaatgtttctaataactaaagcgtgtattttcataaaaatgaaatagtttctaaaaattatataaacatttaaaggg 2997814  T
Q  213 actaaactcggaaagctcacaata 236  Q
    ||||||||||||||||||||||||    
T  2997815 actaaactcggaaagctcacaata 2997838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 8741577 - 8741487
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactga 111  Q
    |||||||||||||| ||||||| |||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |||| ||||||    
T  8741577 ggagctcacacattataaatgtggagaagtggggtgtcaggggttcgaacccctgcccctgcataaattatgtaatgtccctaccaactga 8741487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 45180488 - 45180562
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaat 96  Q
    |||||||||||||| |||||||||||| ||||| ||||| ||||| ||||| || |||||||||||||||||||||    
T  45180488 ggagctcacacattataaatgtagagaagtgggttgtca-gggttcgaacccctacccctgcataaattatgtaat 45180562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 47469041 - 47469137
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| || |||||| |||| ||||| |||| |||||| ||||||| |||||||||||||||||| |||||| || | |||||||| |||||    
T  47469041 gagctcacacaatt-aaatgtggagaagtggggtgtccggggttcgaacctcagcccctgcataaattatgcaatgtccctgccaactgagctaagct 47469137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 36666544 - 36666640
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| || || ||| |||| ||||| |||| |||||| ||||| | |||||||||||||||||| |||||| |||| |||||||| |||||    
T  36666544 gagctcacacaatt-aattgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctaccaactgagctaagct 36666640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 18512541 - 18512605
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    |||||||||||||||||||||| |||| ||||| |||| |||||| ||||| | |||||||||||    
T  18512541 ggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcata 18512605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 18607789 - 18607873
Alignment:
Q  35 ttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||||| ||||| |||  |||||| ||||| | |||||||||||||||||| |||||| |||| |||| ||| |||||    
T  18607789 ttaaatgtagagaagtggggtgttcggggttcgaaccccagcccctgcataaattatgcaatgtccctaccaactcagctaagct 18607873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 34562755 - 34562858
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagctta 121  Q
    ||||||||||| || |||| | |||| ||||| |||| |||||| ||||||| ||||||| |||||||||||||| || |||| |||||||  ||||| |    
T  34562755 gagctcacacaatt-aaatatggagaagtggggtgtccggggttcgaacctcggcccctgtataaattatgtaatatccctaccaactgagttaagctca 34562853  T
Q  122 cagga 126  Q
    |||||    
T  34562854 cagga 34562858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 11333766 - 11333676
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagc 113  Q
    ||||||||||| || |||||| |||| ||||| |||| |||||| ||||  | |||||||||||||||||| |||||| |||| ||||||||    
T  11333766 gagctcacacaatt-aaatgtggagaagtggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccctaccaactgagc 11333676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 11491787 - 11491697
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagc 113  Q
    ||||||||||| || |||||| |||| ||||| |||| |||||| ||||  | |||||||||||||||||| |||||| |||| ||||||||    
T  11491787 gagctcacacaatt-aaatgtggagaagtggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccctaccaactgagc 11491697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 12613281 - 12613210
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatg 92  Q
    ||||||||||||||||||||||||||| ||||| |||| |||||| ||  ||| ||||||| ||| ||||||    
T  12613281 ggagctcacacattttaaatgtagagaagtggggtgtccggggttcgattctcggcccctgtatatattatg 12613210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 13763863 - 13763801
Alignment:
Q  23 agctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||||||||||||||||||||||| ||||| | || |||||| ||||| | |||||||||||    
T  13763863 agctcacacattttaaatgtagagaagtggggtatccggggttcgaaccccagcccctgcata 13763801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 3229682 - 3229751
Alignment:
Q  23 agctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatg 92  Q
    ||||||||||||||||||||| ||| |||||||||| |||||| ||||| |  ||||| |||| ||||||    
T  3229682 agctcacacattttaaatgtaaagaagtgggatgtccggggtttgaaccccaacccctacatatattatg 3229751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 18217009 - 18216912
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| ||||| |||||||| ||||  |||| |||||| ||||| | || | |||||||| |||||||| || |||| |||||||| |||||    
T  18217009 gagctcacacaatttaattgtagagaagtggagtgtccggggttcgaaccccggctcttgcataaaatatgtaatatccctaccaactgagctaagct 18216912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 21265759 - 21265662
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| ||||| ||| |||| ||||| |||| |||||| ||||| | ||||||||||| | |||| ||| || |||| |||||||| |||||    
T  21265759 gagctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcatataatatgcaatatccctaccaactgagctaagct 21265662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 24875089 - 24874977
Alignment:
Q  6 agtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactact 105  Q
    |||||| ||| ||| |||||||||||| || |||| | |||| ||||| |||| | |||| ||||| |||||| ||||||||||||| ||| || ||||     
T  24875089 agtagcctagtggctggagctcacacaatt-aaatatggagaagtggggtgtccgaggttcgaacccctgcccatgcataaattatgcaatatccctacc 24874991  T
Q  106 aactgagcaaagct 119  Q
    |||||||| |||||    
T  24874990 aactgagctaagct 24874977  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 31401213 - 31401309
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| || || ||| |||| ||||| |||| |||||| ||||||| || ||||||||||||||| |||||| |||  |||||||| |||||    
T  31401213 gagctcacacagtt-aattgtggagacgtggggtgtccggggtttgaacctcggctcctgcataaattatgcaatgtccctatcaactgagctaagct 31401309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 44579985 - 44579888
Alignment:
Q  23 agctcacacattttaaatgtagagatgtgggatgtcaggggttagaa-cctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    |||||||||||| ||||||| |||| ||||| ||||||||||| ||| || ||| | |||||||||||||  |||||| |||  |||||||| |||||    
T  44579985 agctcacacattataaatgtggagaagtggggtgtcaggggttcgaaccccctgacactgcataaattatacaatgtctctatcaactgagctaagct 44579888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 23991232 - 23991335
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagctta 121  Q
    ||||||||||| || |||||| |||| ||||| ||||  ||||| ||||| | |||||||||||||||||| |||||| || | |||||||  ||||| |    
T  23991232 gagctcacacaatt-aaatgtggagaagtggggtgtccagggttcgaaccccggcccctgcataaattatgcaatgtccctgccaactgagtcaagctca 23991330  T
Q  122 cagga 126  Q
    |||||    
T  23991331 cagga 23991335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 44245462 - 44245375
Alignment:
Q  17 ggccggagctcacacatttt-aaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactac 104  Q
    ||||| |||||||||||||| |||||| |||| ||||| |||||||| || || || |||||||||||||||| ||||| |||| ||||    
T  44245462 ggccgcagctcacacatttttaaatgtggagaagtggggtgtcaggg-ttcgagcccctgcccctgcataaatcatgtattgtctctac 44245375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 27579441 - 27579515
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaat 96  Q
    ||||||||||||||||||||| ||||  |||| ||||  ||||| |||| || ||||||||||| | ||||||||    
T  27579441 gagctcacacattttaaatgtggagaaatggggtgtctagggttcgaacttcggcccctgcatataatatgtaat 27579515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 37662523 - 37662621
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    |||||||||||| ||||| |||||||| ||||| |||| |||||| | ||| |  |||||||||| | |||| ||| || |||| |||||||| |||||    
T  37662523 ggagctcacacaatttaactgtagagaagtggggtgtccggggttcgtaccccgacccctgcatataatatgcaatatccctaccaactgagctaagct 37662621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 6893188 - 6893301
Alignment:
Q  6 agtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactact 105  Q
    |||||| ||| |||| ||||||||||| ||||| ||| || | ||||  |||| |||||| ||||||| ||||||||||| |  ||| ||| || ||||     
T  6893188 agtagcctagtggccagagctcacacaatttaattgtggaaaagtggagtgtccggggttcgaacctcggcccctgcatataaaatgcaatatccctacc 6893287  T
Q  106 aactgagcaaagct 119  Q
    |||||||| |||||    
T  6893288 aactgagctaagct 6893301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 11215104 - 11215007
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| || || ||| |||| ||||  |||| |||||| ||||||| ||||||||||| | |||| ||| || |||| |||||||| |||||    
T  11215104 gagctcacacaattaaattgtggagaagtggagtgtctggggttcgaacctcagcccctgcatataatatgcaatatccctaccaactgagctaagct 11215007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 16997242 - 16997323
Alignment:
Q  38 aatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||| |||| ||| | |||| |||||| ||||||| ||||||||||||| |||| | |||| |||| |||||||| |||||    
T  16997242 aatgtggagaagtgaggtgtccggggttcgaacctcggcccctgcataaaatatgcattgtctctaccaactgagctaagct 16997323  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 26909822 - 26909914
Alignment:
Q  6 agtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtc 99  Q
    |||||| ||| ||| | ||||||||||||| |||||| |||| ||||| ||||  ||||| ||||| | ||| |||||||||||||| ||||||    
T  26909822 agtagcctagtggctgaagctcacacattt-aaatgtggagaagtggggtgtccagggttcgaacccccgcctctgcataaattatgcaatgtc 26909914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 34058317 - 34058220
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| ||||| ||| |||| ||||  |||| |||||| ||||||| || |||||||| | |||| ||| || |||| |||||||| |||||    
T  34058317 gagctcacacaatttaattgtggagaagtggagtgtccggggttcgaacctcggctcctgcatataatatgcaatatccctaccaactgagctaagct 34058220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 42735985 - 42735948
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtc 58  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  42735985 ggagctcacacattttaaatgtagagaagtggggtgtc 42735948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 48638635 - 48638538
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| ||||| ||| |||| ||||| |||| |||||| ||||| | ||||||||||| |  ||| ||| || |||| |||||||| |||||    
T  48638635 gagctcacacagtttaattgtggagaagtggggtgtctggggttcgaaccccagcccctgcatataaaatgcaatatccctaccaactgagctaagct 48638538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 2556655 - 2556559
Alignment:
Q  26 tcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagcttac 122  Q
    ||||||| || || ||||||||  ||| ||||| |||||| ||||| | ||||||||||| | |||| ||| || |||| |||||||| ||||||||    
T  2556655 tcacacaattaaattgtagagaaatggaatgtctggggttcgaaccccagcccctgcatataatatgcaatatccctaccaactgagctaagcttac 2556559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 8780864 - 8780808
Alignment:
Q  29 cacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    |||||||||||||| |||| ||||| |||| | |||| ||||||| |||||||||||    
T  8780864 cacattttaaatgtggagaagtggggtgtccgaggtttgaacctcggcccctgcata 8780808  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 13059128 - 13059241
Alignment:
Q  6 agtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactact 105  Q
    |||||| ||| ||| ||||| |||||||||||||||| |||| ||||| ||||||||||| ||||| |||||||||||||||||||| | |||| ||||     
T  13059128 agtagcctagtggctggagcacacacattttaaatgtggagaagtggggtgtcaggggttcgaacccctgcccctgcataaattatgcattgtccctacc 13059227  T
Q  106 aactgagcaaagct 119  Q
    |||||||| |||||    
T  13059228 aactgagctaagct 13059241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 42023514 - 42023417
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    |||||||||| ||||||||||| |||| |||||||||||||||||  ||||||| ||||||||||||||||| |||||| |||| |||||||| |||||    
T  42023514 ggagctcacatattttaaatgtggagaagtgggatgtcaggggttcaaacctctacccctgcataaattatgcaatgtc-ctaccaactgagctaagct 42023417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 37708809 - 37708731
Alignment:
Q  7 gtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||| ||| ||| |||||||||||||||||||||| |||| |||||||||| |||||| ||||| | |||||||||||    
T  37708809 gtagcctagtggctggagctcacacattttaaatgtggagaagtgggatgtccggggttcgaaccccggcccctgcata 37708731  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 481101 - 481017
Alignment:
Q  35 ttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    |||||||| |||| ||||| |||| |||||| ||||| | |||||||||||||||||| |||||| |||| |||||||| |||||    
T  481101 ttaaatgtggagaagtggggtgtccggggttcgaaccgcggcccctgcataaattatgcaatgtccctaccaactgagctaagct 481017  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 5328534 - 5328637
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagctta 121  Q
    ||||||||||||||||| ||| |||| ||| | |||| |||||| ||||| | ||||||||||| | |||| ||| || |||| |||||||| |||||||    
T  5328534 gagctcacacattttaattgtggagaagtgaggtgtccggggttcgaaccccggcccctgcatataatatgcaatatccctaccaactgagctaagctta 5328633  T
Q  122 cagg 125  Q
    ||||    
T  5328634 cagg 5328637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 17499057 - 17499147
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgag 112  Q
    ||||| ||||||||||||||| | || ||||| |||||  |||| ||||| |||| ||||||||||||||| |||||| |||| |||||||    
T  17499057 gagctgacacattttaaatgtggggaagtggggtgtcaatggtttgaacccctgctcctgcataaattatgcaatgtccctaccaactgag 17499147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 12770470 - 12770374
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| || |||||| |||| ||||| |||| |||||| ||||| | |||||||||||||||||| |||||| |||  |||||||| |||||    
T  12770470 gagctcacacaatt-aaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctatcaactgagctaagct 12770374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 33810757 - 33810680
Alignment:
Q  8 tagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    |||| ||| ||| |||||||||||||||||||||| |||| ||||| |||| |||||| ||||| | |||||||||||    
T  33810757 tagcttagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggtttgaaccccggcccctgcata 33810680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 24517395 - 24517307
Alignment:
Q  25 ctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagc 113  Q
    |||||||||||||||| |  ||| ||||||||  ||||||| ||||| |||| ||||||||||| ||| |||||| |||| ||||||||    
T  24517395 ctcacacattttaaatatgcagaagtgggatggtaggggttcgaacccctgctcctgcataaatcatgcaatgtccctaccaactgagc 24517307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 34894472 - 34894372
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagctta 121  Q
    ||||||||||| ||||| ||| |||| ||||| |||| |||||| ||||| | ||||||||||| | |||| ||| || |||| |||||||| |||||||    
T  34894472 gagctcacacaatttaactgtggagaagtggggtgtccggggttcgaaccccggcccctgcatataatatgcaatatccctaccaactgagctaagctta 34894373  T
Q  122 c 122  Q
    |    
T  34894372 c 34894372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 3227337 - 3227246
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagc 113  Q
    ||||||||||| ||||| ||| |||| |||||||||  |||||| ||||||| | ||||||||||| ||| |||| || |||| ||||||||    
T  3227337 gagctcacacaatttaattgtggagaagtgggatgttcggggttcgaacctcagtccctgcataaaatatctaatatctctaccaactgagc 3227246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 13105195 - 13105104
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgag 112  Q
    |||||||||||||||||||||| |||| ||||| |||| | |||| ||||| | |||| |||||| |||||| | |||| |||| |||||||    
T  13105195 ggagctcacacattttaaatgtggagaagtggggtgtctgaggttcgaaccccggcccttgcatatattatgcattgtccctaccaactgag 13105104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 31024412 - 31024337
Alignment:
Q  7 gtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgc 82  Q
    ||||| ||| ||| |||||||||||||||||||||| |||| ||||| |||| |||||| ||||| | ||||||||    
T  31024412 gtagcctagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccccagcccctgc 31024337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 38283214 - 38283137
Alignment:
Q  35 ttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgag 112  Q
    |||||||| |||| ||||| |||| |||||| ||||| | ||||||||||||||||| ||||||| || | |||||||    
T  38283214 ttaaatgtggagaagtggggtgtctggggttcgaaccccggcccctgcataaattatataatgtccctgccaactgag 38283137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 41272210 - 41272106
Alignment:
Q  8 tagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaa 107  Q
    |||| ||| ||| ||||||||||||||| |||||| |||| ||||  ||||  | ||| ||||| | |||||||||||||||||| |||||| |||||||    
T  41272210 tagcctagtggcgggagctcacacattt-aaatgtggagaagtggtgtgtccagagttcgaaccccagcccctgcataaattatgcaatgtccctactaa 41272112  T
Q  108 ctgagc 113  Q
     |||||    
T  41272111 ttgagc 41272106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 8183424 - 8183360
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    |||||||||||||||||||| | |||| ||||| |||| |||||| ||||| | |||||||||||    
T  8183424 ggagctcacacattttaaatatggagaagtgggttgtctggggttcgaaccccggcccctgcata 8183360  T

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Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 44053392 - 44053456
Alignment:
Q  7 gtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacc 71  Q
    ||||| ||| ||| |||||||||||||||||||||| |||| ||||| |||| |||||| |||||    
T  44053392 gtagcctagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaacc 44053456  T

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Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 257642 - 257579
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||||||||| ||||| ||| |||| |||| ||||| |||||| ||||||| |||||||||||    
T  257642 gagctcacacaatttaattgtggagaagtggaatgtccggggttcgaacctcggcccctgcata 257579  T

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Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 658278 - 658341
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||||||||| ||||| ||| |||| |||| ||||| |||||| ||||||| |||||||||||    
T  658278 gagctcacacaatttaattgtggagaagtggaatgtccggggttcgaacctcggcccctgcata 658341  T

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Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 844014 - 844077
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||||||||| ||||| ||| |||| |||| ||||| |||||| ||||||| |||||||||||    
T  844014 gagctcacacaatttaattgtggagaagtggaatgtccggggttcgaacctcggcccctgcata 844077  T

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Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 13748986 - 13749049
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    |||||||||||||||||| ||||| | ||||| |||| |||||| ||||| ||||| |||||||    
T  13748986 gagctcacacattttaaacgtagaaaagtggggtgtccggggtttgaacccctgcctctgcata 13749049  T

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Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 22717881 - 22717818
Alignment:
Q  35 ttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgt 98  Q
    |||| ||| |||| ||||| |||| |||||| ||||||| |||||||||||||||||| |||||    
T  22717881 ttaattgtcgagaagtggggtgtccggggttcgaacctcggcccctgcataaattatgcaatgt 22717818  T

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Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 36035131 - 36035209
Alignment:
Q  7 gtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||| ||| ||| |||||||||||||||||||||| |||| ||||| |||| | |||| ||||| |  ||||||||||    
T  36035131 gtagcctagtggctggagctcacacattttaaatgtggagaagtggggtgtccgaggttcgaaccccgacccctgcata 36035209  T

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Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 38955161 - 38955251
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgag 112  Q
    ||||||||||| ||||| |||||||| || |  |||| |||||| ||||| | ||||||||||| | |||||||| || |||| |||||||    
T  38955161 gagctcacacaatttaattgtagagaagtcgagtgtccggggttcgaaccccggcccctgcatataatatgtaatatccctaccaactgag 38955251  T

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Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 2908059 - 2908155
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||||||||| ||  |||| ||||| ||||  ||||| ||||| | ||||||||||| |||||| | |||| ||||||||| ||| |||||    
T  2908059 gagctcacacattttaa-tgcggagaagtggggtgtccagggttcgaaccccggcccctgcatatattatgcattgtccctactaactaagctaagct 2908155  T

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Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 11231522 - 11231446
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtc 99  Q
    ||||||||||| || || ||| |||| ||||| |||| |||||| ||||| | |||||||||||||||||| ||||||    
T  11231522 gagctcacacaatt-aattgtcgagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtc 11231446  T

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Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 25890384 - 25890468
Alignment:
Q  35 ttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    |||| ||| |||| ||||| |||| |||||| ||||| | |||| ||||||||||||| |||||| |||| |||| ||| |||||    
T  25890384 ttaattgtggagaagtggggtgtccggggttcgaaccccggcccttgcataaattatgcaatgtccctaccaactaagctaagct 25890468  T

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Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 34873190 - 34873126
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    |||||||||||||||||||||| |||| ||||| |||| | |||| ||||| |  ||||||||||    
T  34873190 ggagctcacacattttaaatgtggagaagtggggtgtccgaggttcgaaccccgacccctgcata 34873126  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 624583 - 624493
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgag 112  Q
    ||||||||||||||||||||| |||| ||||| ||||||||||| ||||| |||||||||||||||||||| ||||||  ||| |||||||    
T  624583 gagctcacacattttaaatgtggagaagtggggtgtcaggggttcgaacccctgcccctgcataaattatgcaatgtccttaccaactgag 624493  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 55260283 - 55260377
Alignment:
Q  25 ctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    |||||| ||||||||||| |||| ||||  |||||| |||| |||||||||||||| ||||||||||| |||||| |||| |||| ||| |||||    
T  55260283 ctcacatattttaaatgtggagaagtggagtgtcagaggttcgaacctctgcccctacataaattatgcaatgtccctaccaactaagctaagct 55260377  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 36099135 - 36099213
Alignment:
Q  7 gtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||| ||| ||| |||||||||||||||||||||| |||| ||||| |||| |||||| ||||| | |||||||||||    
T  36099135 gtagcctagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcata 36099213  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 49264628 - 49264539
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgag 112  Q
    ||||||||||| || |||||| |||| ||||| |||| |||||| ||||||| |||||||||||| ||||| |||||| || |||||||||    
T  49264628 gagctcacacaatt-aaatgtggagaagtggggtgtccggggttcgaacctcggcccctgcataagttatgcaatgtctctgctaactgag 49264539  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 8965197 - 8965100
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| ||||| |||||||| ||||| |||| |||||| ||||| | ||||||||||| | |||| ||| || |||| |||||||| |||||    
T  8965197 gagctcacacaatttaattgtagagaagtggggtgtccggggttcgaaccccggcccctgcatataatatgcaatatccctaccaactgagctaagct 8965100  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 51890899 - 51890803
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| || |||||| |||| ||||| |||| |||||| ||||| | |||||||||||||||||| |||||| || | |||||||| |||||    
T  51890899 gagctcacacaatt-aaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctgccaactgagctaagct 51890803  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 33933707 - 33933803
Alignment:
Q  23 agctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| |||||||| |||| ||||| ||||  ||| | ||||| | ||||||||||| |||||| |||||| |||| |||||||| |||||    
T  33933707 agctcacacatattaaatgtggagaagtggggtgtccaggggtcgaaccccggcccctgcatatattatgcaatgtccctaccaactgagctaagct 33933803  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 42044026 - 42044110
Alignment:
Q  35 ttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    |||||||| |||| ||||| |||| ||||||  |||||| |||||||||||||||||| |||||| || | |||||||| |||||    
T  42044026 ttaaatgtggagaagtggggtgtccggggttcaaacctcggcccctgcataaattatgcaatgtctctgccaactgagctaagct 42044110  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 3036022 - 3036112
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgag 112  Q
    ||||||||||| ||||| ||| |||| ||||| |||| |||||| ||||||| ||||||||||| | |||| ||| || |||| |||||||    
T  3036022 gagctcacacaatttaattgtggagaagtggggtgtccggggttcgaacctcggcccctgcatataatatgcaatatccctaccaactgag 3036112  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 30305917 - 30305839
Alignment:
Q  7 gtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||| ||| ||| |||||||||||||||||||||| |||| ||| | |||| |||||| ||||| | |||||||||||    
T  30305917 gtagcctagtggctggagctcacacattttaaatgtggagaagtgaggtgtccggggttcgaaccccagcccctgcata 30305839  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 55056019 - 55055922
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    |||||||||||| || |||||| |||| ||||  |||| |||||| ||||||| ||||||||||||| |||| | |||| |||| |||||||| |||||    
T  55056019 ggagctcacacaatt-aaatgtggagaagtggcgtgtccggggttcgaacctcggcccctgcataaaatatgcattgtccctaccaactgagctaagct 55055922  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 11294817 - 11294882
Alignment:
Q  34 tttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtc 99  Q
    ||||||||| |||| ||||| |||| |||||| ||||| | |||||||||||||||||| ||||||    
T  11294817 tttaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtc 11294882  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 21935579 - 21935482
Alignment:
Q  23 agctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagctt 120  Q
    |||||||||| ||||| ||| |||| ||||| |||| |||||| ||||| | ||||||||||| | |||| ||| || |||| |||||||| ||||||    
T  21935579 agctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcatataatatgcaatatccctaccaactgagctaagctt 21935482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 5440517 - 5440585
Alignment:
Q  23 agctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattat 91  Q
    ||||||||||| ||||||||||| ||||||| |||  |||||| |||||||  |||||||||| |||||    
T  5440517 agctcacacatgttaaatgtagaaatgtggggtgtttggggttcgaacctcatcccctgcatatattat 5440585  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 45139861 - 45139945
Alignment:
Q  35 ttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    |||||||| |||| ||| | |||| |||||| ||||| | |||||||||||||||||  |||||| |||| |||||||| |||||    
T  45139861 ttaaatgtggagaagtgaggtgtccggggttcgaaccccggcccctgcataaattatacaatgtccctaccaactgagctaagct 45139945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 29406460 - 29406358
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagctt 120  Q
    |||||||||||| || |||||| |||| ||||| |||| || ||| ||||| |  ||||||||||||||||| |||||| |||| || ||||| |||||     
T  29406460 ggagctcacacaatt-aaatgtggagaagtgggttgtccggagttcgaaccccgacccctgcataaattatgcaatgtccctaccaattgagctaagctc 29406362  T
Q  121 acag 124  Q
    ||||    
T  29406361 acag 29406358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 28715792 - 28715730
Alignment:
Q  23 agctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    |||||||||||||||||||| |||| ||||  |||| |||||| ||||| | |||||||||||    
T  28715792 agctcacacattttaaatgtggagaagtggagtgtccggggttcgaaccccggcccctgcata 28715730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 11375856 - 11375953
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||||||||| ||| |||| ||| | |||| |||||| ||||| | ||||||||||| | |||| ||| || |||  |||||||| |||||    
T  11375856 gagctcacacattttaattgtggagaagtgaggtgtccggggttcgaaccccggcccctgcatataatatgcaatatccctatcaactgagctaagct 11375953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 17435448 - 17435517
Alignment:
Q  23 agctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatg 92  Q
    ||||||||||||||| ||||||||| ||||| |||  |||||| |||| || ||||||| ||| ||||||    
T  17435448 agctcacacattttacatgtagagaagtggggtgtgcggggtttgaacttcagcccctgtatatattatg 17435517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 31852451 - 31852355
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| || |||| | |||| ||||| |||| |||||| ||||||| |||| ||||||||||||  |||||| || | |||||||| |||||    
T  31852451 gagctcacacaatt-aaatatggagaagtggggtgtccggggttcgaacctcggcccttgcataaattatacaatgtccctgccaactgagctaagct 31852355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 40051725 - 40051628
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| ||||| ||| |||| ||||| |||| |||||| ||||| || ||||| |||| | |||| ||| || |||| |||||||| |||||    
T  40051725 gagctcacacaatttaattgtggagaagtggggtgtctggggttcgaacccctacccctacatataatatgcaatatccctaccaactgagctaagct 40051628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 43539911 - 43539826
Alignment:
Q  26 tcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactga 111  Q
    ||||||||||||||||| |||| ||||| ||||  |  || ||||||| |||||| |||| |||||||| |||| |||| ||||||    
T  43539911 tcacacattttaaatgtggagaagtggggtgtctagaattcgaacctcagcccctacatatattatgtattgtccctaccaactga 43539826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 49901585 - 49901488
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| ||||| ||| |||| | ||| |||| |||||| ||||| | ||||||||||| | |||| ||| || |||| |||||||| |||||    
T  49901585 gagctcacacaatttaattgtggagaagcggggtgtccggggttcgaaccccggcccctgcatataatatgcaatatccctaccaactgagctaagct 49901488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 29584713 - 29584669
Alignment:
Q  55 tgtcaggggttagaacctctgcccctgcataaattatgtaatgtc 99  Q
    |||| |||||| ||||||| |||||||||||||||||| ||||||    
T  29584713 tgtccggggttcgaacctcggcccctgcataaattatgcaatgtc 29584669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 37242683 - 37242750
Alignment:
Q  23 agctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattat 91  Q
    |||||||| | | ||||||||||||  |||| |||||||| || |||| ||||||||||||||||||||    
T  37242683 agctcacataatataaatgtagagaaatggggtgtcaggg-ttcgaacttctgcccctgcataaattat 37242750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 41137887 - 41137987
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagctta 121  Q
    ||||||| ||||||||||| |  ||| ||||| |||| | |||| ||||| |  |||||||||| |||||| |||||| |||| |||||||| ||| |||    
T  41137887 gagctcaaacattttaaatatgaagaagtggggtgtctgtggttcgaaccccaacccctgcatatattatgcaatgtccctaccaactgagccaagttta 41137986  T
Q  122 c 122  Q
    |    
T  41137987 c 41137987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 39799998 - 39800094
Alignment:
Q  23 agctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    |||||||||||||||||||| |||| ||||| ||||||||||| || || |||||||||||||||||||| | |||| |||| |||||||| |||||    
T  39799998 agctcacacattttaaatgtggagaagtggggtgtcaggggttcgagcccctgcccctgcataaattatgcattgtccctaccaactgagctaagct 39800094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 7443443 - 7443373
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattat 91  Q
    |||||||||||||| ||||||| |||| ||||| ||||| ||||| ||||| |||||||||||||||||||    
T  7443443 ggagctcacacattataaatgtggagaagtggggtgtcaagggttcgaacccctgcccctgcataaattat 7443373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 3741072 - 3740994
Alignment:
Q  7 gtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||| ||| ||| |||||||||||||||||||||| |||| ||||| |||| |||||| ||||| |  ||||||||||    
T  3741072 gtagcctagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccccgacccctgcata 3740994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 4068085 - 4067988
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    |||||||||||| || |||||| |||| ||||| |||| |||||| |||||||  |||||||||||| |||| | |||| |||| |||||||| |||||    
T  4068085 ggagctcacacaatt-aaatgtggagaagtggggtgtccggggttcgaacctcgccccctgcataaaatatgcattgtccctaccaactgagctaagct 4067988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 6167315 - 6167223
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcag--gggttagaacctctgcccctgcataaattatgtaatgtcactactaactgag 112  Q
    ||||||||||||||||||||| |||| ||| | |||||   | ||| ||||| |||||||||||||||||||| |||||| || | |||||||    
T  6167315 gagctcacacattttaaatgtggagaagtgaggtgtcatatgtgttcgaacccctgcccctgcataaattatgcaatgtccctgccaactgag 6167223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 8241153 - 8241056
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||||||||||||| |||| ||||| |||| |||||| ||||| |  ||| |||||| | |||| ||| || |||| |||||||| |||||    
T  8241153 gagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccccgacccttgcatataatatgcaatatccctaccaactgagctaagct 8241056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 3821373 - 3821489
Alignment:
Q  7 gtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgta-atgtcactact 105  Q
    ||||| ||| ||| |||||||||||||||||||||| |||| ||||| | || ||| || ||||| | ||||||||||| |  ||| |  |||| ||||     
T  3821373 gtagcctagtggctggagctcacacattttaaatgtggagaagtggggtttccgggattcgaaccccggcccctgcatataaaatgcatttgtccctacc 3821472  T
Q  106 aactgagcaaagcttac 122  Q
    |||||||||||||||||    
T  3821473 aactgagcaaagcttac 3821489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 17891810 - 17891889
Alignment:
Q  7 gtagcataggggccggagctcacacatttt-aaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||| ||| ||| |||||||||||||||| |||||| |||| ||||| |||| |||||| ||||| | |||||||||||    
T  17891810 gtagcttagtggctggagctcacacattttaaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcata 17891889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 32550278 - 32550176
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagctta 121  Q
    ||||||||||| || |||||| |||  ||||| |||  |||||| ||||| |||||| ||||||||||||| |||||| |||| |||||| | ||||| |    
T  32550278 gagctcacacaatt-aaatgtggagtagtggggtgtacggggttcgaacccctgcccatgcataaattatgcaatgtctctaccaactgaactaagctca 32550180  T
Q  122 cagg 125  Q
    ||||    
T  32550179 cagg 32550176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 41930208 - 41930145
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||||||||| ||||| |||||||| ||||| |||| |||||| ||||| | |||||||||||    
T  41930208 gagctcacacaatttaattgtagagaagtggggtgtctggggttcgaaccccagcccctgcata 41930145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 23937901 - 23937963
Alignment:
Q  23 agctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    |||||||||||||||||||| |||  ||||| |||| |||||| ||||| | |||||||||||    
T  23937901 agctcacacattttaaatgtggaggagtggggtgtccggggttcgaaccccggcccctgcata 23937963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 25460747 - 25460816
Alignment:
Q  22 gagctcacacatttt-aaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattat 91  Q
    ||||||||||||||| |||||| |||| ||||| |||  |||||| ||||| |||||||||||||||||||    
T  25460747 gagctcacacatttttaaatgtggagaagtggggtgttcggggttcgaacc-ctgcccctgcataaattat 25460816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 28799986 - 28800078
Alignment:
Q  21 ggagctcacacatttt-aaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgag 112  Q
    |||||||||||||||| ||||||||||| ||||| |||||||||||  |||| |||||||||||||||||||| | |||| |||| |||||||    
T  28799986 ggagctcacacatttttaaatgtagagaagtggggtgtcaggggttcaaacccctgcccctgcataaattatgcattgtccctaccaactgag 28800078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 22774147 - 22774066
Alignment:
Q  17 ggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtc 99  Q
    ||||||||||||||||||| |||||| |||| ||||| |||| |||||| ||||| |||||||||||||||||||| ||||||    
T  22774147 ggccggagctcacacattt-aaatgtggagaagtggggtgtccggggtttgaacccctgcccctgcataaattatgcaatgtc 22774066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 4232569 - 4232650
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcact 102  Q
    |||||||| ||||||||||||| |||| | ||| |||||| |||| |||||||||||||| ||||||||||| |||||||||    
T  4232569 ggagctcatacattttaaatgtggagaagcggggtgtcagaggttcgaacctctgcccctacataaattatgcaatgtcact 4232650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 18503448 - 18503510
Alignment:
Q  23 agctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    |||||||||||||||||||| |||| ||||| |||| |||||| ||||||| |||||||||||    
T  18503448 agctcacacattttaaatgtggagaagtggggtgtctggggttcgaacctcagcccctgcata 18503510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 1563706 - 1563799
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaa 115  Q
    ||||||||||| ||||| |||||||| ||||| |||| |||||| ||||| | ||||||||||| | |||| ||| || |||| ||||||||||    
T  1563706 gagctcacacaatttaattgtagagaagtggggtgtccggggttcgaaccccggcccctgcatataatatgcaatatccctaccaactgagcaa 1563799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 10901749 - 10901670
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctct-gcccctgcataaattatgtaatgtc 99  Q
    |||||||||||||| ||||||| |||| ||||| ||| ||||||| ||||| ||  ||||||||||||||||| ||||||    
T  10901749 ggagctcacacattataaatgtggagaagtggggtgttaggggttcgaaccgctatcccctgcataaattatgcaatgtc 10901670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 36932075 - 36931985
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagc 113  Q
    ||||||||||| || ||||||||||| ||||| |||| |||||| ||||| | | |||||||||||||||| |||||| || | ||||||||    
T  36932075 gagctcacacaatt-aaatgtagagaagtggggtgtccggggttcgaaccccggaccctgcataaattatgcaatgtccctgccaactgagc 36931985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 13702143 - 13702065
Alignment:
Q  7 gtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||| ||| ||| |||||||||||||||||||||| |||  ||||| |||| |||||| ||||| | |||||||||||    
T  13702143 gtagcctagtggctggagctcacacattttaaatgtggaggagtggggtgtccggggtttgaaccccggcccctgcata 13702065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 3532681 - 3532592
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactga 111  Q
    ||||||||||| ||||| |||||||| ||||  |||  |||||| ||||||| ||||||||||| |||||| ||| || |||| ||||||    
T  3532681 gagctcacacaatttaattgtagagaagtggagtgtttggggttcgaacctcggcccctgcatatattatgcaatatccctaccaactga 3532592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 46645813 - 46645749
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    |||||||||||||||||||||| |||  ||||| |||| |||||| ||||| | |||||||||||    
T  46645813 ggagctcacacattttaaatgtggaggagtggggtgtccggggttcgaaccccggcccctgcata 46645749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 47438036 - 47437961
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgt 98  Q
    ||||||||||| || |||||| |||| ||||  |||| |||||| ||||| |||||||||||||||||||| |||||    
T  47438036 gagctcacacagtt-aaatgtggagaagtggagtgtccggggtttgaacccctgcccctgcataaattatgcaatgt 47437961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 27788372 - 27788302
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatg 92  Q
    |||||||| |||||| |||||| |||| ||||| |||| |||||| ||||| | ||||||||||||||||||    
T  27788372 ggagctcatacattt-aaatgtggagaagtggggtgtctggggttcgaaccccggcccctgcataaattatg 27788302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 27791528 - 27791458
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatg 92  Q
    |||||||| |||||| |||||| |||| ||||| |||| |||||| ||||| | ||||||||||||||||||    
T  27791528 ggagctcatacattt-aaatgtggagaagtggggtgtctggggttcgaaccccggcccctgcataaattatg 27791458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 9877237 - 9877331
Alignment:
Q  25 ctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    |||||||| ||||| ||| |||| ||||| |||| |||||| ||||| | ||||||||||| | |||| ||| || |||| |||||||| |||||    
T  9877237 ctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcatataatatgcaatatccctaccaactgagctaagct 9877331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 23102528 - 23102622
Alignment:
Q  25 ctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    |||||||| ||||| ||| |||| ||||| |||| |||||| ||||| | ||||||||||| | |||| ||| || |||| |||||||| |||||    
T  23102528 ctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcatataatatgcaatatccctaccaactgagctaagct 23102622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 4960887 - 4960790
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| ||||| ||| |||| ||||  ||||||||||| ||||| |  | |||||||| | |||| ||| || ||||||||||||| |||||    
T  4960887 gagctcacacaatttaattgtggagaagtggagtgtcaggggttcgaaccccgactcctgcatataatatgcaatatccctactaactgagctaagct 4960790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 27425158 - 27425109
Alignment:
Q  55 tgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactac 104  Q
    |||| |||||| ||||| |||||||||||||||||||| |||||| ||||    
T  27425158 tgtccggggttcgaaccactgcccctgcataaattatgcaatgtccctac 27425109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 30388474 - 30388571
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| ||||| ||| |||| ||||  |||| |||||| ||||| | ||||||||||| | |||| ||| || |||| |||||||| |||||    
T  30388474 gagctcacacaatttaattgtggagaagtggagtgtctggggttcgaaccccggcccctgcatataatatgcaatatccctaccaactgagctaagct 30388571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 42435195 - 42435264
Alignment:
Q  30 acattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtc 99  Q
    ||||||||||||| |||| ||| | | || |||||| ||||| | |||||||||||||||||||| ||||    
T  42435195 acattttaaatgtggagaagtgaggtatctggggttcgaaccccggcccctgcataaattatgtattgtc 42435264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 45284787 - 45284883
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| || |||||| |||| ||||| |||| |||||| ||||| |  ||||||||||||||||  |||||| |||  |||||||| |||||    
T  45284787 gagctcacacaatt-aaatgttgagaagtggggtgtccggggttcgaaccccgacccctgcataaattattcaatgtccctatcaactgagctaagct 45284883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 38778701 - 38778737
Alignment:
Q  49 gtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    |||||||||| |||||||||||||| |||||||||||    
T  38778701 gtgggatgtccggggttagaacctcggcccctgcata 38778737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 2145687 - 2145791
Alignment:
Q  7 gtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactacta 106  Q
    ||||| ||| ||| ||||||||||| || ||||||| |||| ||||| |||||||| ||  ||||||||||||||||||||||||| |||||| |||| |    
T  2145687 gtagcctagtggctggagctcacacgttataaatgtggagaagtggggtgtcagggattcaaacctctgcccctgcataaattatgcaatgtccctacca 2145786  T
Q  107 actga 111  Q
    |||||    
T  2145787 actga 2145791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 34125846 - 34125759
Alignment:
Q  24 gctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgag 112  Q
    ||||||||||||||||||| |||| ||||| ||||||||||| ||||||| | |||||||||||| ||| |||||| |||| |||||||    
T  34125846 gctcacacattttaaatgtggagaagtggg-tgtcaggggtttgaacctccgtccctgcataaatcatgcaatgtccctaccaactgag 34125759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 20919700 - 20919616
Alignment:
Q  35 ttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    |||||||| |||| ||||| |||| |||||| ||||| | ||||| |||||||||||| |||||| |||| |||||||| |||||    
T  20919700 ttaaatgtggagaagtggggtgtccggggttcgaaccccggccccagcataaattatgcaatgtccctaccaactgagctaagct 20919616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 33228900 - 33228997
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| ||||| ||| |||| ||||| |||| |||||| ||||| | ||||||||||| | |||| ||| || |||| |||||||| |||||    
T  33228900 gagctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcatataatatgcaatatccctaccaactgagctaagct 33228997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 44558092 - 44558016
Alignment:
Q  35 ttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgag 112  Q
    |||||||| |||| ||||| |||| |||||| ||||| | |||||||||||||||||| |||||| |||| |||||||    
T  44558092 ttaaatgtggagaagtggggtgtccggggttcgaaccccagcccctgcataaattatgcaatgtc-ctaccaactgag 44558016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 1844920 - 1844820
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagctta 121  Q
    ||||||||||| ||||| ||| |||| ||||| |||| | |||| ||||| | ||||||||||| | |||| ||| || |||| |||||||| |||||||    
T  1844920 gagctcacacaatttaattgtggagaagtggggtgtccgaggttcgaaccccggcccctgcatataatatgcaatatccctaccaactgagctaagctta 1844821  T
Q  122 c 122  Q
    |    
T  1844820 c 1844820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 11949977 - 11950060
Alignment:
Q  36 taaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||| |||| ||||| |||| |||||| |||||||  |||||||||||||| |||||| || |||| |||| ||| |||||    
T  11949977 taaatgtggagaagtggggtgtccggggttcgaacctcgtcccctgcataaattgtgtaatttctctaccaacttagctaagct 11950060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 18862355 - 18862292
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||||||||||||||||||| |||| ||||  |||| |||||| ||||| |||||||| ||||    
T  18862355 gagctcacacattttaaatgtggagaagtggagtgtcgggggttcgaacccctgcccctacata 18862292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 32854651 - 32854572
Alignment:
Q  6 agtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    |||||| ||| ||| |||||||||||||||||||||| |||| || || |||| |||||| ||||| | |||| ||||||    
T  32854651 agtagcctagtggctggagctcacacattttaaatgtggagaagtagggtgtccggggttcgaaccccggcccttgcata 32854572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 3596353 - 3596276
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtc 99  Q
    |||||||||||| || |||||| |||| ||||| |||| |||||| ||||| |  ||||||||||||||||| ||||||    
T  3596353 ggagctcacacaatt-aaatgtggagaagtggggtgtccggggttcgaaccccgacccctgcataaattatgcaatgtc 3596276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 5947984 - 5947906
Alignment:
Q  7 gtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||| ||| ||| |||||||||||||||||||||| |||  ||||| |||| |||||| ||||| |  ||||||||||    
T  5947984 gtagcctagtggctggagctcacacattttaaatgtggaggagtggggtgtccggggttcgaaccccgacccctgcata 5947906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 20497147 - 20497225
Alignment:
Q  7 gtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||| ||| ||| |||||||||||||||||||||| |||| ||||| |||| ||| || ||||| | |||||| ||||    
T  20497147 gtagcctagaggctggagctcacacattttaaatgtggagaagtggggtgtccgggattcgaaccccagcccctacata 20497225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 23984175 - 23984253
Alignment:
Q  7 gtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||| ||| ||| |||| ||||||||||||||||| |||| ||||| |||| |||||| |||||   |||||||||||    
T  23984175 gtagcttagtggctggagttcacacattttaaatgtggagaagtggggtgtccggggttcgaaccctggcccctgcata 23984253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 10463159 - 10463192
Alignment:
Q  20 cggagctcacacattttaaatgtagagatgtggg 53  Q
    |||||||||||||||||||||||||||| |||||    
T  10463159 cggagctcacacattttaaatgtagagaagtggg 10463192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 11050724 - 11050821
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| ||||| | | |||| ||||| |||| || ||| ||||| | ||||||||||| | |||||||| || |||| |||||||| |||||    
T  11050724 gagctcacacaatttaattatggagaagtggggtgtccggagttcgaaccccagcccctgcatataatatgtaatatccctaccaactgagctaagct 11050821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 32189970 - 32190058
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactga 111  Q
    ||||||||||| || || |||||| | ||| | |||| |||||| ||||| | |||||||||||||||||| |||||| |||| ||||||    
T  32189970 gagctcacacaatt-aattgtagaaaagtgaggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctaccaactga 32190058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 36182745 - 36182648
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| ||||| ||| |||| ||||  |||| |||||| ||||| |||| |||||||| | |||| ||| || |||| |||||||| |||||    
T  36182745 gagctcacacaatttaattgtggagaagtggagtgtccggggttcgaacccctgctcctgcatataatatgcaatatccctaccaactgagctaagct 36182648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 1964443 - 1964379
Alignment:
Q  35 ttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtc 99  Q
    |||||| | |||| ||||| |||| |||||| ||||| | |||||||||||||||||| ||||||    
T  1964443 ttaaatatggagaagtggggtgtccggggtttgaaccccggcccctgcataaattatgcaatgtc 1964379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 15939407 - 15939343
Alignment:
Q  7 gtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacc 71  Q
    ||||| ||| ||| |||||||||||||||||||||| |||| ||||| |||  |||||| |||||    
T  15939407 gtagcctagtggctggagctcacacattttaaatgtggagaagtggggtgttcggggttcgaacc 15939343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 18254693 - 18254629
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||||||||||||||||||||  ||| ||||| |||| || ||| ||||| | |||||||||||    
T  18254693 ggagctcacacattttaaatgtgaagaagtggggtgtctggagttcgaaccccggcccctgcata 18254629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 46767461 - 46767383
Alignment:
Q  7 gtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||| ||| ||| |||||||||||||||||||||| |||| |||||||||| |||||| ||||||| |||||||||||    
T  46767461 gtagcctagtggctggagctcacacattttaaatgtggagaagtgggatgtccggggtttgaacctcagcccctgcata 46767383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 3614046 - 3614144
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    |||| |||||||||  |||| | |||| ||||| ||||||||||| ||||| |||||||||||||||||||| |||||| |||| ||| |||| |||||    
T  3614046 ggagatcacacattacaaatatggagaagtggggtgtcaggggttcgaacccctgcccctgcataaattatgcaatgtccctaccaacagagctaagct 3614144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 14795215 - 14795117
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    |||||||||||||||||||||| |||| ||||| |||| |||||| |||||   || |||||||| |||||| ||||||||||| |||| ||| |||||    
T  14795215 ggagctcacacattttaaatgtggagaagtggggtgtccggggtttgaaccctggcacctgcatatattatgcaatgtcactaccaactaagctaagct 14795117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 38949792 - 38949686
Alignment:
Q  6 agtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactact 105  Q
    |||||| ||| ||| ||||||||||| | |||||||| |||| ||||| |||  |||||| ||||| | |||||||||||||||||| |||||| ||||     
T  38949792 agtagcctagtggctggagctcacac-tattaaatgtggagaagtggggtgttcggggttcgaaccccggcccctgcataaattatgcaatgtccctacc 38949694  T
Q  106 aactgagc 113  Q
    ||||||||    
T  38949693 aactgagc 38949686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 19222550 - 19222643
Alignment:
Q  18 gccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgag 112  Q
    ||||||||||||||| || |||||| |||| ||||| |||| |||||| ||||| | |||||||||||||||||| |||||| || | |||||||    
T  19222550 gccggagctcacacaatt-aaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctgccaactgag 19222643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 25883939 - 25884025
Alignment:
Q  6 agtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatg 92  Q
    |||||| ||| ||| |||||||||||||||||||||| |||| ||||| |||| |||||| ||||| |  |||||||||| ||||||    
T  25883939 agtagcctagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccccgacccctgcatatattatg 25884025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 27329884 - 27329962
Alignment:
Q  7 gtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||| ||| ||| |||||||||||||||||||||| |||| ||||| |||| |||||| ||||| | |||||||||||    
T  27329884 gtagcctagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcata 27329962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 51879213 - 51879135
Alignment:
Q  7 gtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||| ||| ||| |||||||||||||||||||||| |||| ||||| |||| |||||| ||||| | |||||||||||    
T  51879213 gtagcctagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcata 51879135  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 55383866 - 55383952
Alignment:
Q  33 ttttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    |||||||||| |||| ||||| ||||||||||| ||||| ||||| |||||||||||||| |||||  |||| |||| ||| |||||    
T  55383866 ttttaaatgtggagaagtggggtgtcaggggttcgaacccctgcctctgcataaattatgcaatgttcctaccaactaagctaagct 55383952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 24303492 - 24303396
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| || |||||| |||| ||||| |||| |||||| ||||| | |||||||||||||||||| |||||| || | |||||||| |||||    
T  24303492 gagctcacacaatt-aaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctgccaactgagctaagct 24303396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 28951818 - 28951742
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtc 99  Q
    |||||||||||||| ||||||  ||||||||| |||| |||||| ||||| | |||||||||||||||||| ||||||    
T  28951818 gagctcacacattt-aaatgtgaagatgtggggtgtctggggttcgaaccccagcccctgcataaattatgcaatgtc 28951742  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 41936374 - 41936474
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagctta 121  Q
    ||||||||||| ||||| ||| |||| ||||| |||| |||||| ||||| | ||||||||||| | |||| ||| || |||| |||||||| |||||||    
T  41936374 gagctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcatataatatgcaatatccctaccaactgagctaagctta 41936473  T
Q  122 c 122  Q
    |    
T  41936474 c 41936474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 5173978 - 5174059
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactac 104  Q
    ||||||||||| || |||||| |||| ||||| |||  |||||| ||||| |||||||||||||||||||| |||||| ||||    
T  5173978 gagctcacacaatt-aaatgtggagaagtggggtgttcggggttcgaacccctgcccctgcataaattatgcaatgtctctac 5174059  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 17602643 - 17602740
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| ||||| ||| |||| ||||| |||| |||||| ||||||| |||||| |||| | |||| ||| || |||| |||||||| |||||    
T  17602643 gagctcacacaatttaattgtggagaagtggggtgtccggggttcgaacctcggcccctacatataatatgcaatatccctaccaactgagctaagct 17602740  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 32776314 - 32776217
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| || || ||  |||| ||| | |||| |||||| ||||| | |||||||||||||||||| |||||| |||| |||||||| |||||    
T  32776314 gagctcacacaattaaattggggagaagtgaggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctaccaactgagctaagct 32776217  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 34898734 - 34898823
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactga 111  Q
    ||||||||||| ||||| ||| |||| ||||| |||| |||||| ||||||| ||||||||||| | |||| ||| || |||| ||||||    
T  34898734 gagctcacacaatttaattgtggagaagtggggtgtctggggttcgaacctcagcccctgcatataatatgcaatatccctaccaactga 34898823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 49443391 - 49443467
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtc 99  Q
    |||||||||||||| |||||| |||| ||||| |||| |||||| ||||  | |||||||||||||||||| ||||||    
T  49443391 gagctcacacattt-aaatgtggagaagtggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtc 49443467  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 26942856 - 26942756
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagctta 121  Q
    ||||||||||| ||||| |||||||| ||||| |||| | |||| |||||   ||||||||||| | |||| ||| || |||| |||||||| |||||||    
T  26942856 gagctcacacaatttaattgtagagaagtggggtgtctgcggttcgaaccctggcccctgcatataatatgcaatatccctaccaactgagctaagctta 26942757  T
Q  122 c 122  Q
    |    
T  26942756 c 26942756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 32401606 - 32401504
Alignment:
Q  8 tagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaa 107  Q
    |||| ||| ||| |||||||||||| || |||||| |||||||||| |||| |||||| ||||| |  ||||||||||||||||  |||||| |||| ||    
T  32401606 tagcctagtggctggagctcacacaatt-aaatgtggagatgtggggtgtccggggttcgaacc-cgacccctgcataaattatacaatgtccctaccaa 32401509  T
Q  108 ctgag 112  Q
    |||||    
T  32401508 ctgag 32401504  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 44625191 - 44625255
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||||| |||||||||||||| |||| ||||| |||| |||||| ||||| | |||||||||||    
T  44625191 ggagctcccacattttaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcata 44625255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 4860264 - 4860201
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||||||||| ||||| ||| |||| ||||| |||| |||||| ||||||| |||||||||||    
T  4860264 gagctcacacaatttaattgtggagaagtggggtgtctggggttcgaacctcagcccctgcata 4860201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 39720038 - 39719947
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagc 113  Q
    ||||||||||| ||||| ||| |||| ||||| |||| |||||| ||||| | ||||||||||| | |||| ||| || |||| ||||||||    
T  39720038 gagctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcatataatatgcaatatccctaccaactgagc 39719947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 125
Target Start/End: Original strand, 48515364 - 48515455
Alignment:
Q  34 tttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagcttacagg 125  Q
    ||||||||| |||| ||| | |||| |||||| |||||||  ||||||||||||||||| ||| || |||| |||||||  ||||| |||||    
T  48515364 tttaaatgtggagaagtgtggtgtccggggttcgaacctcgacccctgcataaattatggaatatccctaccaactgagttaagctcacagg 48515455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 16886686 - 16886580
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagctt 120  Q
    ||||||||||||||||||| || || | ||||| |||| | |||| ||| | | ||||||| ||| | |||| |||||| |||| |||||||| |||||     
T  16886686 ggagctcacacattttaaacgtggaaaagtggggtgtctgaggtttgaatcccggcccctgtatacaatatgcaatgtccctaccaactgagctaagctc 16886587  T
Q  121 acaggac 127  Q
    |||||||    
T  16886586 acaggac 16886580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 43280167 - 43280094
Alignment:
Q  25 ctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtc 99  Q
    ||||||||||| |||||| |||| ||||| |||| ||| || ||||| | |||||||||||||||||| ||||||    
T  43280167 ctcacacattt-aaatgtggagaagtggggtgtccgggattcgaaccccggcccctgcataaattatgcaatgtc 43280094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 44764822 - 44764728
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| || |||||| |||| ||||  |||| |||||| |||||   |||||||||||||||||| |||||| |||| |||||||| |||||    
T  44764822 gagctcacacaatt-aaatgtggagaagtggagtgtccggggttcgaaccc--gcccctgcataaattatgcaatgtccctaccaactgagctaagct 44764728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 47098606 - 47098528
Alignment:
Q  35 ttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagc 113  Q
    |||||||| |||| ||| | |||| |||||| ||||||| |||||||||||||||||  |||||| |||  ||||||||    
T  47098606 ttaaatgtggagaagtgaggtgtctggggttcgaacctcggcccctgcataaattatacaatgtccctatcaactgagc 47098528  T

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Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 53432704 - 53432794
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgag 112  Q
    ||||||||||| ||||| ||| |||| ||||| |||| |||||| ||||| | ||||||||||| | |||| ||| || |||| |||||||    
T  53432704 gagctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcatataatatgcaatatccctaccaactgag 53432794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 32256521 - 32256618
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| ||||| ||| |||| ||||| |||| |||||| ||||| | ||||||||||| |  ||| ||| || |||| |||||||| |||||    
T  32256521 gagctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcatataacatgcaatatccctaccaactgagctaagct 32256618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 34102578 - 34102667
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactga 111  Q
    ||||||||||| ||||| ||| |||| ||||| |||| |||||| ||||| | ||||||||||| | |||| ||| || |||| ||||||    
T  34102578 gagctcacacagtttaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcatataatatgcaatatccctaccaactga 34102667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 41710701 - 41710624
Alignment:
Q  7 gtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcat 84  Q
    ||||| ||| ||| |||||||||||||||||||||| |||| ||| | |||| ||| || ||||| | ||||||||||    
T  41710701 gtagcctagtggctggagctcacacattttaaatgtggagaagtgaggtgtccgggattcgaaccccggcccctgcat 41710624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 47098835 - 47098738
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| ||||| ||| |||| ||||  |||| |||||| ||||| | ||||||||||| | |||| ||| || |||| |||||||| |||||    
T  47098835 gagctcacacaatttaattgtggagaagtggagtgtctggggttcgaaccccggcccctgcatataatatgcaatatccctaccaactgagctaagct 47098738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 48739711 - 48739808
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| ||||| ||| |||| ||||| |||| |||||| ||||| | ||||||||||| |  ||| ||| || |||| |||||||| |||||    
T  48739711 gagctcacacagtttaattgtggagaagtggggtgtctggggttcgaaccccagcccctgcatataaaatgcaatatccctaccaactgagctaagct 48739808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 49375701 - 49375738
Alignment:
Q  75 gcccctgcataaattatgtaatgtcactactaactgag 112  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  49375701 gcccctgcataaattatgtaatgtccctaccaactgag 49375738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 8497125 - 8497073
Alignment:
Q  19 ccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacc 71  Q
    ||||||||| |||||||||||||| |||| ||||| ||||| ||||| |||||    
T  8497125 ccggagctcgcacattttaaatgtggagaagtggggtgtcaagggttcgaacc 8497073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 52984113 - 52984009
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagctta 121  Q
    ||||||||||| ||||| |||||||| ||||  |||| |||||| ||||| |  ||| |||||| | |||| ||| || |||| |||||||| ||||| |    
T  52984113 gagctcacacaatttaattgtagagaagtggagtgtccggggttcgaaccccgacccttgcatacaatatgcaatatccctaccaactgagctaagctca 52984014  T
Q  122 cagga 126  Q
    |||||    
T  52984013 cagga 52984009  T

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Target: scaffold0154 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 28788 - 28888
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagctt 120  Q
    |||||||||||| || |||||| |||| ||||| |||| |||||| ||||| | ||||||||||||| ||||||||||| |||  |||||||| ||||||    
T  28788 ggagctcacacaatt-aaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaagtatgtaatgtccctatcaactgagctaagctt 28886  T
Q  121 ac 122  Q
    ||    
T  28887 ac 28888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 13436637 - 13436558
Alignment:
Q  32 attttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactga 111  Q
    ||||||||| | |||| ||||| ||||||||||| |||||  |||||||||||| |||||| |||||| |||||||||||    
T  13436637 attttaaatatggagaagtggggtgtcaggggtttgaaccattgcccctgcatatattatgcaatgtccctactaactga 13436558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 32670020 - 32670091
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatg 92  Q
    |||||||||||||| ||||| | |||| || || ||||||||||| ||||| ||||||||||||||||||||    
T  32670020 ggagctcacacattataaatatggagaagtagggtgtcaggggttcgaacccctgcccctgcataaattatg 32670091  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 2251958 - 2251844
Alignment:
Q  6 agtagcataggggccggagctcacacatttt-aaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactac 104  Q
    |||||| ||| |||| ||||||||||||||| |||||| |||| ||||| |||| |||||| ||||| | ||||||||||| | |||| ||| || ||||    
T  2251958 agtagcctagtggccagagctcacacatttttaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcatatagtatgcaatatccctac 2251859  T
Q  105 taactgagcaaagct 119  Q
     |||||||| |||||    
T  2251858 caactgagctaagct 2251844  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 32621534 - 32621612
Alignment:
Q  7 gtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||| ||| ||| |||||||||||||||||||||| |||| ||||| |||| ||| || ||||| | |||||||||||    
T  32621534 gtagcctagtggctggagctcacacattttaaatgtggagaagtggggtgtctgggattcgaaccccggcccctgcata 32621612  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 32616501 - 32616424
Alignment:
Q  8 tagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    |||| ||| ||| ||||||||||||||||||||| ||||| ||||| |||| ||| || ||||| | |||||||||||    
T  32616501 tagcctagtggctggagctcacacattttaaatgcagagaagtggggtgtccgggattcgaaccccagcccctgcata 32616424  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 18904369 - 18904305
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    |||||||||||||||||||||| |||| ||||| |||| |||||| ||||| |  ||||||||||    
T  18904369 ggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccccgacccctgcata 18904305  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 24319115 - 24319027
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactga 111  Q
    ||||||||||| || || ||| |||| ||||  |||| |||||| ||||| | |||||||||||||||||| |||||| |||| ||||||    
T  24319115 gagctcacacaatt-aattgtggagaagtggagtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctaccaactga 24319027  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 1368153 - 1368217
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    |||||||||||||||||||||| |||| ||||| |||| || ||| |||||   |||||||||||    
T  1368153 ggagctcacacattttaaatgtggagaagtggggtgtctggagtttgaaccctagcccctgcata 1368217  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 3709977 - 3709913
Alignment:
Q  7 gtagcataggggccggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacc 71  Q
    ||||| ||| ||| ||||||| |||||||||||||| |||| ||||| |||| |||||| |||||    
T  3709977 gtagcctagtggctggagctctcacattttaaatgtggagaagtggggtgtctggggttcgaacc 3709913  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 32142002 - 32142066
Alignment:
Q  21 ggagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    |||||||||||||||||||||| || | ||||| |||| |||||| ||||| | |||||| ||||    
T  32142002 ggagctcacacattttaaatgtggaaaagtggggtgtctggggttcgaaccccagcccctacata 32142066  T

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Target: scaffold0088 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 10793 - 10890
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    ||||||||||| ||||| ||| |||| ||||| |||| |||||| ||||| | ||||||||||| | |||| ||| || |||| |||||||| |||||    
T  10793 gagctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcatataatatgcaatatccctaccaactgagctaagct 10890  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 315748 - 315689
Alignment:
Q  26 tcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcata 85  Q
    ||||||||||||||||| |||| |||||||||| |||||| |||| ||  ||||||||||    
T  315748 tcacacattttaaatgtggagaagtgggatgtccggggttcgaacatcgacccctgcata 315689  T

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Target: scaffold0519 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 2930 - 3006
Alignment:
Q  22 gagctcacacattttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtc 99  Q
    ||||||||||| || || ||| |||| ||||| |||| |||||| ||||| | |||||||||||||||||| ||||||    
T  2930 gagctcacacaatt-aattgtcgagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtc 3006  T

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Target: scaffold0250 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 15095 - 15011
Alignment:
Q  35 ttaaatgtagagatgtgggatgtcaggggttagaacctctgcccctgcataaattatgtaatgtcactactaactgagcaaagct 119  Q
    |||||||| |||| ||||| |||  |||||| |||||    ||||||||||||||||| |||||| |||| |||||||| |||||    
T  15095 ttaaatgtggagaagtggggtgtttggggttcgaaccatgacccctgcataaattatgcaatgtccctaccaactgagctaagct 15011  T

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