View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2030_high_38 (Length: 236)

Name: NF2030_high_38
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2030_high_38
NF2030_high_38
[»] chr4 (20 HSPs)
chr4 (10-236)||(17282681-17282907)
chr4 (87-236)||(13861174-13861322)
chr4 (88-236)||(25239555-25239703)
chr4 (86-236)||(18284716-18284866)
chr4 (88-236)||(10421908-10422055)
chr4 (88-193)||(56581780-56581885)
chr4 (88-236)||(9901893-9902042)
chr4 (119-192)||(18277297-18277370)
chr4 (165-233)||(12885216-12885283)
chr4 (176-233)||(3270492-3270549)
chr4 (12-65)||(17285460-17285513)
chr4 (185-235)||(12217518-12217568)
chr4 (183-236)||(45313102-45313155)
chr4 (194-236)||(49402658-49402700)
chr4 (176-233)||(3268280-3268337)
chr4 (183-236)||(8082000-8082053)
chr4 (195-236)||(15455408-15455449)
chr4 (181-230)||(25781830-25781880)
chr4 (182-232)||(26780996-26781046)
chr4 (183-224)||(13033787-13033828)
[»] chr5 (15 HSPs)
chr5 (88-236)||(23495209-23495357)
chr5 (88-234)||(5590890-5591036)
chr5 (94-236)||(20899787-20899929)
chr5 (88-228)||(33622692-33622831)
chr5 (88-236)||(36712840-36712988)
chr5 (143-236)||(22922233-22922325)
chr5 (143-236)||(15620390-15620483)
chr5 (86-236)||(19330084-19330234)
chr5 (161-233)||(8244442-8244514)
chr5 (184-236)||(24095287-24095339)
chr5 (150-236)||(28068215-28068297)
chr5 (144-236)||(41037846-41037943)
chr5 (185-233)||(5931145-5931193)
chr5 (156-236)||(22922830-22922909)
chr5 (183-224)||(23927284-23927325)
[»] scaffold0096 (1 HSPs)
scaffold0096 (104-232)||(11067-11195)
[»] chr7 (14 HSPs)
chr7 (88-236)||(18185485-18185633)
chr7 (88-236)||(47295872-47296017)
chr7 (94-236)||(18152995-18153137)
chr7 (143-236)||(21593068-21593162)
chr7 (161-233)||(22703827-22703899)
chr7 (161-233)||(22705536-22705608)
chr7 (162-233)||(9549165-9549236)
chr7 (94-232)||(28794222-28794359)
chr7 (161-236)||(29164782-29164857)
chr7 (161-236)||(30770378-30770452)
chr7 (87-236)||(30765121-30765271)
chr7 (183-232)||(20093489-20093538)
chr7 (161-233)||(21802382-21802453)
chr7 (88-236)||(2250184-2250332)
[»] scaffold0265 (2 HSPs)
scaffold0265 (88-234)||(16947-17093)
scaffold0265 (88-234)||(14718-14864)
[»] chr1 (16 HSPs)
chr1 (88-234)||(21815716-21815862)
chr1 (88-234)||(21817945-21818091)
chr1 (94-236)||(22186177-22186312)
chr1 (86-236)||(8996865-8997014)
chr1 (88-181)||(49472152-49472245)
chr1 (140-236)||(8990953-8991047)
chr1 (93-232)||(9858833-9858971)
chr1 (161-233)||(19442307-19442379)
chr1 (163-233)||(19967615-19967684)
chr1 (194-236)||(24974077-24974119)
chr1 (86-228)||(38621661-38621803)
chr1 (178-224)||(23933877-23933923)
chr1 (143-173)||(24974152-24974182)
chr1 (184-230)||(52193389-52193435)
chr1 (189-230)||(27282066-27282107)
chr1 (183-232)||(30893966-30894015)
[»] chr2 (15 HSPs)
chr2 (88-236)||(27347031-27347179)
chr2 (143-236)||(23929713-23929805)
chr2 (88-210)||(21148684-21148805)
chr2 (88-236)||(29568175-29568323)
chr2 (143-236)||(42534314-42534406)
chr2 (93-233)||(41266393-41266533)
chr2 (88-233)||(23756015-23756161)
chr2 (88-233)||(3770119-3770263)
chr2 (170-233)||(26159230-26159293)
chr2 (186-233)||(19092681-19092728)
chr2 (185-232)||(22453010-22453057)
chr2 (187-224)||(24837810-24837847)
chr2 (161-233)||(25134130-25134201)
chr2 (185-224)||(10887036-10887075)
chr2 (187-224)||(15327964-15328001)
[»] scaffold0362 (1 HSPs)
scaffold0362 (88-236)||(7540-7688)
[»] chr3 (14 HSPs)
chr3 (88-236)||(19773246-19773394)
chr3 (88-233)||(16853203-16853348)
chr3 (87-236)||(22914911-22915060)
chr3 (159-232)||(44635730-44635802)
chr3 (187-236)||(16914665-16914714)
chr3 (186-221)||(4073215-4073250)
chr3 (185-236)||(22006450-22006501)
chr3 (185-236)||(22013967-22014018)
chr3 (88-139)||(31530882-31530933)
chr3 (159-232)||(3559313-3559386)
chr3 (151-233)||(1997929-1998009)
chr3 (184-230)||(16841306-16841352)
chr3 (183-224)||(15243072-15243113)
chr3 (183-224)||(36639551-36639592)
[»] scaffold0084 (1 HSPs)
scaffold0084 (95-192)||(54768-54865)
[»] chr6 (21 HSPs)
chr6 (143-236)||(14910520-14910613)
chr6 (161-235)||(12738428-12738502)
chr6 (150-236)||(29095208-29095294)
chr6 (88-233)||(8305922-8306067)
chr6 (143-235)||(29482506-29482598)
chr6 (161-233)||(4409127-4409199)
chr6 (161-233)||(15119915-15119986)
chr6 (143-232)||(14479909-14479999)
chr6 (166-233)||(7968691-7968758)
chr6 (143-236)||(3876245-3876338)
chr6 (163-233)||(18043274-18043343)
chr6 (159-232)||(17748718-17748791)
chr6 (88-224)||(24438779-24438915)
chr6 (178-230)||(31344376-31344428)
chr6 (183-230)||(7412311-7412358)
chr6 (143-226)||(18735916-18735998)
chr6 (197-236)||(19860243-19860282)
chr6 (186-236)||(18258786-18258836)
chr6 (198-236)||(23574364-23574402)
chr6 (143-236)||(18728837-18728929)
chr6 (202-234)||(15369814-15369846)
[»] scaffold0280 (1 HSPs)
scaffold0280 (88-236)||(1232-1380)
[»] scaffold0083 (1 HSPs)
scaffold0083 (88-236)||(4388-4536)
[»] scaffold0058 (2 HSPs)
scaffold0058 (142-236)||(15279-15373)
scaffold0058 (183-229)||(1562-1608)
[»] chr8 (21 HSPs)
chr8 (143-236)||(7454858-7454949)
chr8 (88-236)||(7999511-7999658)
chr8 (152-236)||(1788576-1788659)
chr8 (161-233)||(17775639-17775711)
chr8 (163-233)||(2085939-2086009)
chr8 (88-236)||(33273698-33273845)
chr8 (162-233)||(32009210-32009280)
chr8 (161-233)||(18040677-18040749)
chr8 (161-233)||(18574217-18574288)
chr8 (161-236)||(24033696-24033770)
chr8 (187-236)||(11709327-11709376)
chr8 (183-231)||(10532988-10533036)
chr8 (88-134)||(25820645-25820691)
chr8 (181-230)||(9251443-9251492)
chr8 (187-236)||(14056119-14056168)
chr8 (183-230)||(9555067-9555114)
chr8 (183-225)||(22906398-22906440)
chr8 (143-236)||(41281000-41281094)
chr8 (187-224)||(13770798-13770835)
chr8 (184-224)||(22282307-22282347)
chr8 (183-219)||(37296701-37296737)
[»] scaffold0008 (2 HSPs)
scaffold0008 (156-236)||(253241-253321)
scaffold0008 (155-236)||(242600-242681)
[»] scaffold0170 (1 HSPs)
scaffold0170 (143-236)||(16508-16601)
[»] scaffold0042 (2 HSPs)
scaffold0042 (87-234)||(68532-68679)
scaffold0042 (150-236)||(74767-74853)
[»] scaffold0989 (1 HSPs)
scaffold0989 (161-233)||(1718-1790)
[»] scaffold0034 (1 HSPs)
scaffold0034 (161-233)||(47612-47684)
[»] scaffold0063 (1 HSPs)
scaffold0063 (186-232)||(49421-49467)
[»] scaffold0013 (1 HSPs)
scaffold0013 (186-236)||(37417-37467)
[»] scaffold0299 (1 HSPs)
scaffold0299 (161-233)||(19082-19153)
[»] scaffold0025 (1 HSPs)
scaffold0025 (143-236)||(86554-86647)
[»] scaffold0192 (1 HSPs)
scaffold0192 (183-236)||(12278-12331)
[»] scaffold0111 (1 HSPs)
scaffold0111 (187-236)||(3021-3070)
[»] scaffold0150 (1 HSPs)
scaffold0150 (161-229)||(30258-30325)
[»] scaffold0043 (1 HSPs)
scaffold0043 (183-224)||(56798-56839)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 17282907 - 17282681
Alignment:
Q  10 ataattcttcccctcgataaaataaagacggctaaaatcatgaatgtgacttgacccnnnnnnnnnnnnnntcatgaatgatagtacctgatcggaaggt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||| ||||||    
T  17282907 ataattcttcccctcgataaaataaagacggctaaaatcatgaatgtgacttgacccaaaaaaaataaaaatcatgaatgatagtacctgatcagaaggt 17282808  T
Q  110 gactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacg 209  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||    
T  17282807 gactgccggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcataatgcttcttggagcggatggagggtgtgtacttgcagccactccgacg 17282708  T
Q  210 ctcaagtcagtagagatcagagagtga 236  Q
    |||||||||||||||||||||||||||    
T  17282707 ctcaagtcagtagagatcagagagtga 17282681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 87 - 236
Target Start/End: Original strand, 13861174 - 13861322
Alignment:
Q  87 atgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggt 186  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13861174 atgatcgtacctgatcagaaggtgactgccggtgtcgtgaatgtggtggttgtgacggtggttgaatacgtcagaatgcttcttggagtggat-gagggt 13861272  T
Q  187 gtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  13861273 gtgtacctgcaggcactccgacgctcaagtcagtagagaccagagagtga 13861322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 25239555 - 25239703
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||  |||||    
T  25239555 tgatcgtacctgatcagaaggtgactgccagtgtcgtgaatgtggtggtggtgacggtggttggatacgtcataatgcttcttggagcggatgaggggtg 25239654  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||| | ||| |||||||||||||||||||||||||||||||||||||    
T  25239655 tgtacctacagacactccgacgctcaagtcagtagagatcagagagtga 25239703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 18284866 - 18284716
Alignment:
Q  86 aatgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggaggg 185  Q
    |||||| |||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||  |     
T  18284866 aatgatcgtacctgattagaaggtgactgtcggtgtcgtgaatgtggtggttgtgacggtggttgaatacgtcataatgcttcttggagaggatgggagc 18284767  T
Q  186 tgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||||| | || ||||| | ||||||||||||||||||||||||||||||    
T  18284766 tgtgtacctacatgcacttcaacgctcaagtcagtagagatcagagagtga 18284716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 10421908 - 10422055
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| ||||||||||  || ||||||| ||||||||||||||||||||| |||||||||||||   ||||||||||||||||||||| |||||| |||||    
T  10421908 tgatcgtacctgatcacaatgtgactgccggtgtcgtgaatgtggtggttgtgacggtggttgtg-acgtcagaatgcttcttggagcggatggggggtg 10422006  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
     |||| ||||||||||||||||||||||| |||||||||||||||||||    
T  10422007 ggtacctgcaggcactccgacgctcaagttagtagagatcagagagtga 10422055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 56581780 - 56581885
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||||||||| |||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  56581780 tgatcgtacctgatcagaaggtgactgctggtgtcgtgaatgtggtggttgtgacggtggttgaatacgtcagaatgcttcttggagcggatggggggtg 56581879  T
Q  188 tgtaca 193  Q
    ||||||    
T  56581880 tgtaca 56581885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 9902042 - 9901893
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtca-gaatgcttcttggagtggatggagggt 186  Q
    |||| |||||||||| |||||||| ||  ||||   ||||||||||||| |  | |||||| |||| ||||| ||||||||||||||  ||  || |||     
T  9902042 tgatcgtacctgatcagaaggtgattgctggtgctttgaatgtggtggttggaatggtggtagaatgcgtcaagaatgcttcttggaacggggggtgggg 9901943  T
Q  187 gtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  9901942 gtgtacctgcagacactccgacgctcaagtcagtagagatcagagagtga 9901893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 18277370 - 18277297
Alignment:
Q  119 tgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtgtgtac 192  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||| |||| | ||||||||||    
T  18277370 tgtcgtgaatgtggaggttgtgacggtggttgaatacgtcagaatggttcttggagcggatagggggtgtgtac 18277297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 12885216 - 12885283
Alignment:
Q  165 cttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||||||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  12885216 cttcttggagcggatgg-gggtgtgtacctgcaggcactccgacgctcaagtaagtagagatcagagag 12885283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 3270492 - 3270549
Alignment:
Q  176 ggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  3270492 ggatggggggtgtgtacctgcaggcactccgacgctcaagtcagcagagatcagagag 3270549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 17285513 - 17285460
Alignment:
Q  12 aattcttcccctcgataaaataaagacggctaaaatcatgaatgtgacttgacc 65  Q
    |||| |||||||| |||||||||| |||||||||||||||||||||||||||||    
T  17285513 aattattcccctcaataaaataaatacggctaaaatcatgaatgtgacttgacc 17285460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 12217518 - 12217568
Alignment:
Q  185 gtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtg 235  Q
    |||||||| ||||| |||| |||||||||||||||||||||||||||||||    
T  12217518 gtgtgtacctgcagacacttcgacgctcaagtcagtagagatcagagagtg 12217568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 45313102 - 45313155
Alignment:
Q  183 gggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||||||| |||||||||| |||||||||||| |||||| ||||||||||||    
T  45313102 gggtgtgtacctgcaggcacttcgacgctcaagtaagtagaaatcagagagtga 45313155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 49402658 - 49402700
Alignment:
Q  194 tgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||| ||||||||||||||||||||||||||||| ||||||    
T  49402658 tgcaggtactccgacgctcaagtcagtagagatcagggagtga 49402700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 3268280 - 3268337
Alignment:
Q  176 ggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||||| | |||||||| |||| | | |||||||||||||||||||||||||||||||    
T  3268280 ggatggggagtgtgtacctgcatgtattccgacgctcaagtcagtagagatcagagag 3268337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 8082000 - 8082053
Alignment:
Q  183 gggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||||||| ||||||  ||||||||||||||| ||||||||||| |||||||    
T  8082000 gggtgtgtacctgcaggtgctccgacgctcaagtaagtagagatcatagagtga 8082053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 15455408 - 15455449
Alignment:
Q  195 gcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||| ||||||||||||||| |||||||||||||||||||    
T  15455408 gcaggcgctccgacgctcaagttagtagagatcagagagtga 15455449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 25781880 - 25781830
Alignment:
Q  181 gagggtgtgtacatgcaggcactccgacgctcaagtcagta-gagatcaga 230  Q
    |||||||||||| ||||| |||||||||||||||| ||||| |||||||||    
T  25781880 gagggtgtgtacctgcagacactccgacgctcaagccagtatgagatcaga 25781830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 26781046 - 26780996
Alignment:
Q  182 agggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagaga 232  Q
    |||| |||||| |||||| |||||||||||||||| |||||||| ||||||    
T  26781046 agggggtgtacctgcaggtactccgacgctcaagtaagtagagaccagaga 26780996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 13033828 - 13033787
Alignment:
Q  183 gggtgtgtacatgcaggcactccgacgctcaagtcagtagag 224  Q
    |||||||||| ||||| ||||| |||||||||||||||||||    
T  13033828 gggtgtgtacctgcagacactctgacgctcaagtcagtagag 13033787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 23495209 - 23495357
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  23495209 tgatcgtacctgatcagaaggtgactatcggtgtcgtgaatgtggtggttgtgacggtggttgaatacgtcagaatgtttcttggagcggatggggggtg 23495308  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  23495309 tgtacctgcaggcactccaacgctcaagtcagtagagatcagagagtga 23495357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 88 - 234
Target Start/End: Complemental strand, 5591036 - 5590890
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||  ||||    
T  5591036 tgatcgtacctgattagaaggtgactgccggtgtcgtgaatgtggtggtggtgacggtggttggatacgtcaaaatgcttcttggagcggatgggtggtg 5590937  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagagt 234  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  5590936 tgtacttgcaggcactccgacgctcaagtcagtagagatcagagagt 5590890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 94 - 236
Target Start/End: Complemental strand, 20899929 - 20899787
Alignment:
Q  94 tacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtgtgtaca 193  Q
    ||||||||| |||||||| || ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| | ||||||||     
T  20899929 tacctgatcagaaggtgattgccggtgtcgtgaatgtggtggttgtgacggtggttgaatacgttagaatgcttcttggagcggatggggagtgtgtacc 20899830  T
Q  194 tgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |  ||||||||||||||||||||||||||||||||||||||||    
T  20899829 tagaggcactccgacgctcaagtcagtagagatcagagagtga 20899787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 88 - 228
Target Start/End: Complemental strand, 33622831 - 33622692
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| ||||||||||  |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| || |||||| |||||    
T  33622831 tgatcgtacctgatcaaaaggtgactgtcggtgtcgt-aatgtggtggttgtgacggtggttgaatacgtcagaatgcttcttgaagcggatggggggtg 33622733  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatca 228  Q
    ||||| ||||| |||||||||||||||||||||||||||||    
T  33622732 tgtacttgcagacactccgacgctcaagtcagtagagatca 33622692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 36712988 - 36712840
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||||||||| ||||||||||| ||||||||||||||||||||| ||||| || ||||||||| ||||||||||| | |||| |||||| |||||    
T  36712988 tgatcgtacctgatcagaaggtgactgccggtgtcgtgaatgtggtggttgtgactgtagttgaatacatcagaatgcttttgggagcggatggggggtg 36712889  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  36712888 tgtacctgcaggcactccgacgctcaagttagtagagatcagagagtga 36712840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 22922325 - 22922233
Alignment:
Q  143 ggtggttgaatacgtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||| ||||  ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  22922325 ggtggtagaatgtgtcagaatgcttcttggagcggatggagggtgtgtacctgcaggcactccgacgctcaagt-agtagagatcagagagtga 22922233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 15620483 - 15620390
Alignment:
Q  143 ggtggttgaatacgtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||| ||||  |||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||| ||||||||| || ||||||    
T  15620483 ggtggtagaatgagtcagaatgcttcttggagcagatggggggtgtgtacatgcaggcactccgacgctcaagtaagtagagataagggagtga 15620390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 19330234 - 19330084
Alignment:
Q  86 aatgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgac-ggtggttgaatacgtcagaa-tgcttcttggagtggatggag 183  Q
    |||||| |||||||||| |||||||||||||||||   | |||| ||||||  |||  |||||| |||| ||||| || ||||||||||| |||| || |    
T  19330234 aatgatcgtacctgatcagaaggtgactgtcggtgctttaaatgcggtggtt-tgagtggtggtagaatgcgtcaaaagtgcttcttggaatggaagg-g 19330137  T
Q  184 ggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||| ||||| ||||||| ||||||||||||||| |||||||||||||||||||    
T  19330136 ggtttgtacttgcaggcgctccgacgctcaagtaagtagagatcagagagtga 19330084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 8244442 - 8244514
Alignment:
Q  161 aatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||||||||||||| |||||| || ||||||| ||||||||||||||| ||||||| |||| |||||||||||    
T  8244442 aatgcttcttggagcggatgggggatgtgtacctgcaggcactccgacactcaagtaagtatagatcagagag 8244514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 24095287 - 24095339
Alignment:
Q  184 ggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  24095287 ggtgtgtgcatgcagacactccgacgctcaagtcagtagagatcagagagtga 24095339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 28068297 - 28068215
Alignment:
Q  150 gaatacgtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||| |||||||||||||||||||| | |||| |||| ||||| ||||| ||||||||||||||    |||||||||||||||||||    
T  28068297 gaatgcgtcagaatgcttcttggagcgaatggggggtatgtacctgcagacactccgacgctca----agtagagatcagagagtga 28068215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 41037943 - 41037846
Alignment:
Q  144 gtggttgaatacgtcagaatgcttcttggagtggatggagggtg-----tgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||| ||||||||| ||||||||||||||| |||||| ||| |     ||||| |||| |||||||||||| ||||| |||||||||||||||||||    
T  41037943 gtggtggaatacgtcggaatgcttcttggagcggatgggggggggggggtgtacctgcacgcactccgacgcccaagtaagtagagatcagagagtga 41037846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 5931145 - 5931193
Alignment:
Q  185 gtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  5931145 gtgtgtacctgcagacactccgacgctcaagtcagtagagatcagagag 5931193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 22922909 - 22922830
Alignment:
Q  156 gtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||||||||||| || | ||  || ||| |||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  22922909 gtcagaatgcttctggggggggggggggggggtgtacctgcaggcactccgacgctcaagt-agtagagatcagagagtga 22922830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 23927325 - 23927284
Alignment:
Q  183 gggtgtgtacatgcaggcactccgacgctcaagtcagtagag 224  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  23927325 gggtttgtacctgcagacactccgacgctcaagtcagtagag 23927284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 104 - 232
Target Start/End: Complemental strand, 11195 - 11067
Alignment:
Q  104 gaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcact 203  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  11195 gaaggtgactgccggtgtcgtgaatgtggtggttgtgacggtggttgaatacgtcaaaatgcttcttggagtggatggtgggtgtgtacctgcaggcact 11096  T
Q  204 ccgacgctcaagtcagtagagatcagaga 232  Q
    |||||||||||||||||||||||||||||    
T  11095 ccgacgctcaagtcagtagagatcagaga 11067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 18185485 - 18185633
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||| ||||| ||||||||||  ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |||||    
T  18185485 tgatcgtacatgatcagaaggtgactaccggtgtcgtgaatgtggtggtggtgacggtggttggatatgtcagaatgcttcttggagtggatcgggggtg 18185584  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18185585 tgtacctgcaggcactccgacgctcaagtcagtagagatcagagagtga 18185633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 47296017 - 47295872
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  47296017 tgatcgtacatgatcagaaggtgactgccggtgtcgtgaatgtggcggtggtgacggtggttgaatacgtcagaatgtttcttggagcggatggggggtg 47295918  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||   | |||||||||||| ||||||||||||||||||||||||||    
T  47295917 tgtac---ctggcactccgacgttcaagtcagtagagatcagagagtga 47295872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 94 - 236
Target Start/End: Original strand, 18152995 - 18153137
Alignment:
Q  94 tacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtgtgtaca 193  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |  ||||| ||||||||||     
T  18152995 tacctgatcagaaggcgactgccggtgtcgtgaatgtggtggtggtgacggtggttggatacgtcagaatgcttcttgaggcagatggggggtgtgtacc 18153094  T
Q  194 tgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||||||||||||||||||||||| | ||||||| |||||||    
T  18153095 tgcaggcactccgacgctcaagtcatttgagatcaaagagtga 18153137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 21593162 - 21593068
Alignment:
Q  143 ggtggttgaatacgtcagaatgcttcttggagtggatggaggg-tgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||||||||| |||||||| |||||||||| |||||| ||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  21593162 ggtggttgaataagtcagaatacttcttggagcggatgggggggtgtgtacttgcaggcactccgaagctcaagtcagtagagatcagagagtga 21593068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 22703827 - 22703899
Alignment:
Q  161 aatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||||||||||||| |||| | |||||||||| ||||||||||||||||||||||| ||||||||| ||||||    
T  22703827 aatgcttcttggagcggattgggggtgtgtacctgcaggcactccgacgctcaagtaagtagagataagagag 22703899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 22705536 - 22705608
Alignment:
Q  161 aatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||||||||| ||| |||||| |||||||||| ||||||||||||||| ||||||| ||||||||||||||||    
T  22705536 aatgcttctttgagcggatggggggtgtgtacctgcaggcactccgacactcaagtaagtagagatcagagag 22705608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 9549236 - 9549165
Alignment:
Q  162 atgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    ||||||||||||| |||||| |||||||||| |  |||||||||||||||||||| ||||||||||||||||    
T  9549236 atgcttcttggagcggatggggggtgtgtacctataggcactccgacgctcaagtaagtagagatcagagag 9549165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 232
Target Start/End: Complemental strand, 28794359 - 28794222
Alignment:
Q  94 tacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtca-gaatgcttcttggagtggatggagggtgtgtac 192  Q
    ||||||||| ||||||||||||||||||  |||||| | || |  ||| ||||||||||||||| | ||||| ||||||||  ||  || || |||||||    
T  28794359 tacctgatcagaaggtgactgtcggtgttttgaatgcgatgatt-tgagggtggttgaatacgttaagaatggttcttggaacggcggg-ggatgtgtac 28794262  T
Q  193 atgcaggcactccgacgctcaagtcagtagagatcagaga 232  Q
     |||| ||||||||||||||||||||||||||||||||||    
T  28794261 ctgcacgcactccgacgctcaagtcagtagagatcagaga 28794222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 29164782 - 29164857
Alignment:
Q  161 aatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||||||||||| |||||| || ||||||| |||||  |||||||||||||||| |||||||||||||||||||    
T  29164782 aatgcttcttggagcggatgggggctgtgtacctgcagagactccgacgctcaagtaagtagagatcagagagtga 29164857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 30770452 - 30770378
Alignment:
Q  161 aatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||||||||||| |||||| |||||||||| | ||||||||||||||||||||| ||||||||| | |||||||    
T  30770452 aatgcttcttggagcggatgg-gggtgtgtacctacaggcactccgacgctcaagtaagtagagataaaagagtga 30770378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 236
Target Start/End: Complemental strand, 30765271 - 30765121
Alignment:
Q  87 atgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtca-gaatgcttcttggagtggatggaggg 185  Q
    ||||| |||||||||| |||||||| ||||||||   |||||| |||||| |  | |||||| |||| ||||| ||||||||||||||   |     |||    
T  30765271 atgatcgtacctgatcagaaggtgattgtcggtgctttgaatgcggtggttggaatggtggtagaatgcgtcaagaatgcttcttggaacagcgaagggg 30765172  T
Q  186 tgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||||  |||||||||| ||||||||||||||||||||||| |||||||    
T  30765171 tgtgtaccagcaggcactcggacgctcaagtcagtagagatcatagagtga 30765121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 20093489 - 20093538
Alignment:
Q  183 gggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagaga 232  Q
    |||||||||| || || |||||||||||||||||||||||||||||||||    
T  20093489 gggtgtgtacctgtagacactccgacgctcaagtcagtagagatcagaga 20093538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 21802382 - 21802453
Alignment:
Q  161 aatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||||||||||||| |||||| |||||||||| |  ||| ||| |||||||||||| ||||||||||||||||    
T  21802382 aatgcttcttggagcggatgg-gggtgtgtacctataggaacttcgacgctcaagtaagtagagatcagagag 21802453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 2250332 - 2250184
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgac-ggtggttgaatacgtca-gaatgcttcttggagtggatggaggg 185  Q
    |||| |||||||||| ||||||||||| |||||   | |||||||||||  |||  |||||| |||| ||||| || ||||||||||  ||||  | |||    
T  2250332 tgatcgtacctgatcagaaggtgactgccggtgctttaaatgtggtggtt-tgagtggtggtagaatgcgtcaagagtgcttcttgggatggagtg-ggg 2250235  T
Q  186 tgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||||| |  |||| ||||||||||||||| |||||||||||||||||||    
T  2250234 tgtgtacctataggcgctccgacgctcaagttagtagagatcagagagtga 2250184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 88 - 234
Target Start/End: Original strand, 16947 - 17093
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||||||||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||    
T  16947 tgatcgtacctgatcagaaggtgactgccggtgtcgtgaatgtggtggttgtgacagtggttgaatacgtcagaatacttcttggagtggatggggggtg 17046  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagagt 234  Q
    ||||| |||||||||| |||||||||||||||| |||||||||||||    
T  17047 tgtacctgcaggcacttcgacgctcaagtcagttgagatcagagagt 17093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 88 - 234
Target Start/End: Original strand, 14718 - 14864
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||||| ||| ||||||||||| |||| |||||||||||||||| |||||||||||||||||||||| |||||||||| ||| |||||| |||||    
T  14718 tgatcgtacctaatcagaaggtgactgccggtatcgtgaatgtggtggttgtgacggtggttgaatacgtcataatgcttcttagagcggatggggggtg 14817  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagagt 234  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  14818 tgtacttgcaggcactccgatgctcaagtcagtagagatcagagagt 14864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 88 - 234
Target Start/End: Complemental strand, 21815862 - 21815716
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||||||||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||    
T  21815862 tgatcgtacctgatcagaaggtgactgccggtgtcgtgaatgtggtggttgtgacagtggttgaatacgtcagaatacttcttggagtggatggggggtg 21815763  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagagt 234  Q
    ||||| |||||||||| |||||||||||||||| |||||||||||||    
T  21815762 tgtacctgcaggcacttcgacgctcaagtcagttgagatcagagagt 21815716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 88 - 234
Target Start/End: Complemental strand, 21818091 - 21817945
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||||| ||| ||||||||||| |||| |||||||||||||||| |||||||||||||||||||||| |||||||||| ||| |||||| |||||    
T  21818091 tgatcgtacctaatcagaaggtgactgccggtatcgtgaatgtggtggttgtgacggtggttgaatacgtcataatgcttcttagagcggatggggggtg 21817992  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagagt 234  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  21817991 tgtacttgcaggcactccgatgctcaagtcagtagagatcagagagt 21817945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 94 - 236
Target Start/End: Complemental strand, 22186312 - 22186177
Alignment:
Q  94 tacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtgtgtaca 193  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||  ||||||||||||      |||||||||||||| |||| | ||||||||||     
T  22186312 tacctgatcagaaggtgactgtcggtgtcgtgaatgtggtggttgtg--ggtggttgaataa-----aatgcttcttggagcggatagggggtgtgtacc 22186220  T
Q  194 tgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||| ||||||||||||||||||| |||||||||||||||||    
T  22186219 tgcagacactccgacgctcaagtcaatagagatcagagagtga 22186177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 8997014 - 8996865
Alignment:
Q  86 aatgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggaggg 185  Q
    |||||| |||||||||| |||||||||||  ||||   |||||||||||||   ||||||||| |||||||||||||||||||||||||   |||| |||    
T  8997014 aatgatcgtacctgatcagaaggtgactgctggtgctttgaatgtggtggtttagacggtggtggaatacgtcagaatgcttcttggagcaaatgg-ggg 8996916  T
Q  186 tgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||| ||  |||||||||||| ||||||||||||||||||||||||| ||||    
T  8996915 tgtctatctgcaggcactccaacgctcaagtcagtagagatcagagcgtga 8996865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 49472152 - 49472245
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatgg 181  Q
    |||| |||||| ||| ||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||    
T  49472152 tgatggtacctaatcagaaggtgactgccggtgtcgtgaatgtggtggttgtgacgatggttgaatacgtcagaatgcttcttggagcggatgg 49472245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 8991047 - 8990953
Alignment:
Q  140 gacggtggttgaatacgtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||||||| ||||||||||||||||||||||||| | ||||  ||||||||| |||||| |||||||||||||| |||||||||||||||||||||    
T  8991047 gacggtggtggaatacgtcagaatgcttcttggagcgaatgg--ggtgtgtacctgcaggtactccgacgctcaaatcagtagagatcagagagtga 8990953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 93 - 232
Target Start/End: Original strand, 9858833 - 9858971
Alignment:
Q  93 gtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtgtgtac 192  Q
    |||||||||| |||||||||||||||||   | |||||||||||    | ||| || |||| |||||||||||||||| ||| |||||||||| |||| |    
T  9858833 gtacctgatcagaaggtgactgtcggtgctttaaatgtggtggtttgaatggttgtagaatgcgtcagaatgcttcttagagcggatggaggg-gtgtgc 9858931  T
Q  193 atgcaggcactccgacgctcaagtcagtagagatcagaga 232  Q
     ||||||||||||||||||||||| |||||||||||||||    
T  9858932 ctgcaggcactccgacgctcaagtaagtagagatcagaga 9858971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 19442379 - 19442307
Alignment:
Q  161 aatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||||    
T  19442379 aatgcttcttggagcggatggagggtgtgtacctgcaggcactctgacactcaagtaagtagagatcagagag 19442307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 19967684 - 19967615
Alignment:
Q  163 tgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||||||||||| |||||| ||| |||||| ||||||||||||||||||||||| ||||||||||||||||    
T  19967684 tgcttcttggagcggatgggggg-gtgtacctgcaggcactccgacgctcaagtaagtagagatcagagag 19967615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 24974119 - 24974077
Alignment:
Q  194 tgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  24974119 tgcaggcactctgacgctcaagtcagtagagatcagagagtga 24974077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 228
Target Start/End: Original strand, 38621661 - 38621803
Alignment:
Q  86 aatgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgac-ggtggttgaatacgtcagaatgcttcttggagtggatggagg 184  Q
    |||||| |||||||||| |||||||||||  ||||   |||||| ||||||  |||  |||||| |||| |||||||||||||||||||| |||||   |    
T  38621661 aatgattgtacctgatcagaaggtgactgctggtgctttgaatgcggtggtt-tgagtggtggtagaatgcgtcagaatgcttcttggagcggatgagag 38621759  T
Q  185 gtgtgtacatgcaggcactccgacgctcaagtcagtagagatca 228  Q
    |||||||  ||||| ||| |||||  |||||| |||||||||||    
T  38621760 gtgtgtatctgcagacaccccgacattcaagtaagtagagatca 38621803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 23933923 - 23933877
Alignment:
Q  178 atggagggtgtgtacatgcaggcactccgacgctcaagtcagtagag 224  Q
    ||||||||||||||| ||||| ||||||| ||||||||||| |||||    
T  23933923 atggagggtgtgtacctgcagacactccgtcgctcaagtcaatagag 23933877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 173
Target Start/End: Complemental strand, 24974182 - 24974152
Alignment:
Q  143 ggtggttgaatacgtcagaatgcttcttgga 173  Q
    |||||||||||||||||||||||||||||||    
T  24974182 ggtggttgaatacgtcagaatgcttcttgga 24974152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 52193435 - 52193389
Alignment:
Q  184 ggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcaga 230  Q
    ||||||||| ||||| ||||| ||||||||||||||||||| |||||    
T  52193435 ggtgtgtacttgcagacactctgacgctcaagtcagtagagttcaga 52193389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 27282066 - 27282107
Alignment:
Q  189 gtacatgcaggcactccgacgctcaagtcagtagagatcaga 230  Q
    |||| ||||| ||||||||||||||||||||||||| |||||    
T  27282066 gtacctgcagacactccgacgctcaagtcagtagaggtcaga 27282107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 30893966 - 30894015
Alignment:
Q  183 gggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagaga 232  Q
    |||||||||| ||||| |||| |||| || ||||||||||||||||||||    
T  30893966 gggtgtgtacgtgcagacacttcgacacttaagtcagtagagatcagaga 30894015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 27347031 - 27347179
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||| | |||    
T  27347031 tgatcgtacctgatcagaaggtgactgccggtgtcgtgaatgtggtggttgtgacggtggttgaatacatcagaatgcttcttggagcggatggggtgtg 27347130  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||| |  ||||||||||||||||||||||||||||||||||||||||    
T  27347131 tgtacctataggcactccgacgctcaagtcagtagagatcagagagtga 27347179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 23929713 - 23929805
Alignment:
Q  143 ggtggttgaatacgtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||| ||||||||||||||||||||||||| |||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||||||    
T  23929713 ggtggtagaatacgtcagaatgcttcttggagcggatgg-gggtgtgtacctgcaggcactctgacgctcaagtaagtagagatcagagagtga 23929805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 210
Target Start/End: Original strand, 21148684 - 21148805
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||||||||  ||||||||||| |||||||||||| ||||||||  ||||| ||||||||||| |||||||||||||||||| |||||| |||||    
T  21148684 tgatcgtacctgataagaaggtgactgccggtgtcgtgaacgtggtggttatgacgatggttgaatacatcagaatgcttcttggagcggatgg-gggtg 21148782  T
Q  188 tgtacatgcaggcactccgacgc 210  Q
    ||||| || ||||||| ||||||    
T  21148783 tgtacctgtaggcacttcgacgc 21148805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 29568175 - 29568323
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||||||||| ||||||||  |||||||   |||||| ||||||   |  |||||| |||| |||||||||||||||||||||| |||  |||||    
T  29568175 tgatcgtacctgatcagaaggtgatcgtcggtgctttgaatgcggtggtttaggtggtggtagaatgcgtcagaatgcttcttggagtgaatgaggggtg 29568274  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||| ||||| |||||||| |||||||| ||||||||| |||||||||    
T  29568275 tgtacctgcagacactccgatgctcaagtaagtagagattagagagtga 29568323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 42534406 - 42534314
Alignment:
Q  143 ggtggttgaatacgtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||| |||| |||||||||||||||||||| |||||| ||||||| || || || ||||||||||||||||| |||||||||||||||||||    
T  42534406 ggtggtagaatgcgtcagaatgcttcttggagcggatgg-gggtgtgcacctgtagacactccgacgctcaagtaagtagagatcagagagtga 42534314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 41266533 - 41266393
Alignment:
Q  93 gtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtgtgtac 192  Q
    |||||||||| ||||||||||  |||||   |||||||||||||  |   ||||||  ||| || || ||||||| |||||| |||||| ||| ||||||    
T  41266533 gtacctgatcagaaggtgactaccggtgctttgaatgtggtggttttagtggtggtgaaatgcgccaaaatgcttattggagcggatggggggggtgtac 41266434  T
Q  193 atgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
     ||||||||||||||||||||||| ||||||||||||||||    
T  41266433 ctgcaggcactccgacgctcaagtaagtagagatcagagag 41266393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 23756161 - 23756015
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggaggg-t 186  Q
    ||||||||||||||| |||||| |||||||||||  |||||| ||||||  |   ||||||  ||| || || | |||||||| ||| |||||| ||| |    
T  23756161 tgatagtacctgatcagaaggtaactgtcggtgttttgaatgcggtggttttagtggtggtgaaattcgccaaattgcttcttagagcggatgggggggt 23756062  T
Q  187 gtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  23756061 gtgtacctgcaggcactctgacgctcaagtaagtagagatcagagag 23756015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 88 - 233
Target Start/End: Original strand, 3770119 - 3770263
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||||||||| ||||||| ||| |||||   |||||||||||||  |   ||||||  ||| || || |||||||||||||| |||||| |||||    
T  3770119 tgatcgtacctgatcagaaggtggctgccggtgctttgaatgtggtggttttagtggtggtgaaatgcgccaaaatgcttcttggagcggatgg-gggtg 3770217  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    || || |||| |||||||||||||||||| ||||||||||||||||    
T  3770218 tgaacctgcaagcactccgacgctcaagtaagtagagatcagagag 3770263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 26159293 - 26159230
Alignment:
Q  170 tggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    ||||| |||||| |||||||||  ||||||||||||||||||||||| ||||||||||||||||    
T  26159293 tggagcggatggggggtgtgtatctgcaggcactccgacgctcaagtaagtagagatcagagag 26159230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 19092681 - 19092728
Alignment:
Q  186 tgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    ||||||| ||||| |||||| |||||||||||||||||||||||||||    
T  19092681 tgtgtacctgcagacactccaacgctcaagtcagtagagatcagagag 19092728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 22453057 - 22453010
Alignment:
Q  185 gtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagaga 232  Q
    |||||||| ||||||||||||||| |||||||||||| ||||||||||    
T  22453057 gtgtgtacctgcaggcactccgaccctcaagtcagtatagatcagaga 22453010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 24837847 - 24837810
Alignment:
Q  187 gtgtacatgcaggcactccgacgctcaagtcagtagag 224  Q
    |||||| |||||||||||||||||||||||||||||||    
T  24837847 gtgtacctgcaggcactccgacgctcaagtcagtagag 24837810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 25134201 - 25134130
Alignment:
Q  161 aatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||||||||||||| |||| | || ||||||| || ||||||||| |||||||||| |||| |||||||||||    
T  25134201 aatgcttcttggagcggatag-ggatgtgtacctgtaggcactccaacgctcaagtaagtatagatcagagag 25134130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 10887075 - 10887036
Alignment:
Q  185 gtgtgtacatgcaggcactccgacgctcaagtcagtagag 224  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  10887075 gtgtgtacatgcagacactccgatgctcaagtcagtagag 10887036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 15328001 - 15327964
Alignment:
Q  187 gtgtacatgcaggcactccgacgctcaagtcagtagag 224  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  15328001 gtgtacctgcagacactccgacgctcaagtcagtagag 15327964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 7688 - 7540
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| ||||||||||  |||||||||  ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||   ||||| |||||    
T  7688 tgatcgtacctgatcataaggtgactaccggtgtcttgaatgtggtggttgtgacggtggttgaatacgtcagaatgcttcttggaacagatggggggtg 7589  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||| || |||||||||||||||||||| |||||||||||||| ||||    
T  7588 tgtacctgtaggcactccgacgctcaagttagtagagatcagagggtga 7540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 19773246 - 19773394
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||||||||| ||||||||||| |||||   |||||||||||||   |||||||||  |||  ||||||||||||||| ||| ||||||||||||    
T  19773246 tgatcgtacctgatcagaaggtgactgccggtgctttgaatgtggtggtttagacggtggtgaaatgtgtcagaatgcttctttgagcggatggagggtg 19773345  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  19773346 tgtacctgcagacactcagacgctcaagtcagtagagatcagagagtga 19773394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 16853348 - 16853203
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||||||||| | |||||||||||||||   |||||| |||||  ||||||||||| |||| | | |||||||||||||||| |||||  |||||    
T  16853348 tgatcgtacctgatcaggaggtgactgtcggtgctttgaatgcggtggcagtgacggtggtggaatgcattagaatgcttcttggagcggatgaggggtg 16853249  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    ||||| || |||||||| ||||||||||| ||||||||||||||||    
T  16853248 tgtacctgtaggcactcggacgctcaagttagtagagatcagagag 16853203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 236
Target Start/End: Original strand, 22914911 - 22915060
Alignment:
Q  87 atgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggt 186  Q
    ||||| |||||||||| |||||||||||||||||   | |||| ||||||      ||||||  ||| || || ||||||||||||||||||||| | |     
T  22914911 atgatcgtacctgatcagaaggtgactgtcggtgctttaaatgcggtggtataagtggtggtgaaatgcgccaaaatgcttcttggagtggatggggtgc 22915010  T
Q  187 gtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  22915011 gtgtacttgcaggcactccgacgctcaagtaagtagagatcagagagtga 22915060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 44635730 - 44635802
Alignment:
Q  159 agaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagaga 232  Q
    |||||||||||||||  | | |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44635730 agaatgcttcttggaacg-acggagggtgtgtacatgcaggcactccgacgctcaagccagtagagatcagaga 44635802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 16914665 - 16914714
Alignment:
Q  187 gtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||| ||||||| ||||||| |||||||||||||||||||||||||||    
T  16914665 gtgtacctgcaggcgctccgacactcaagtcagtagagatcagagagtga 16914714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 4073250 - 4073215
Alignment:
Q  186 tgtgtacatgcaggcactccgacgctcaagtcagta 221  Q
    ||||||||||||||||||||||||||||||||||||    
T  4073250 tgtgtacatgcaggcactccgacgctcaagtcagta 4073215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 22006450 - 22006501
Alignment:
Q  185 gtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||||| ||||| |||||||||||| |||||||||||||||| |||||||    
T  22006450 gtgtgtacctgcagacactccgacgctgaagtcagtagagatcatagagtga 22006501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 22013967 - 22014018
Alignment:
Q  185 gtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||||| ||||| |||||||||||| |||||||||||||||| |||||||    
T  22013967 gtgtgtacctgcagacactccgacgctgaagtcagtagagatcatagagtga 22014018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 31530933 - 31530882
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggt 139  Q
    |||| |||||||||  ||||||||||| ||||||||||||||||||||||||    
T  31530933 tgatcgtacctgattagaaggtgactgccggtgtcgtgaatgtggtggtggt 31530882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 3559386 - 3559313
Alignment:
Q  159 agaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagaga 232  Q
    |||||||||||| || |||  || | |||||||| ||||| ||||| ||||||||||| |||||||||||||||    
T  3559386 agaatgcttctttgaatggcgggggagtgtgtacctgcagacactctgacgctcaagttagtagagatcagaga 3559313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 1997929 - 1998009
Alignment:
Q  151 aatacgtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||||| || ||||||  |||||| ||||||  ||||||||| |||||||||||  | |||||||| ||||||||||||||||    
T  1997929 aatacgccaaaatgctatttggagcggatgg--ggtgtgtacctgcaggcactctaatgctcaagtaagtagagatcagagag 1998009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 16841352 - 16841306
Alignment:
Q  184 ggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcaga 230  Q
    ||||||||| | ||| ||||||||||||||||||||||||| |||||    
T  16841352 ggtgtgtacctacagacactccgacgctcaagtcagtagagttcaga 16841306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 15243113 - 15243072
Alignment:
Q  183 gggtgtgtacatgcaggcactccgacgctcaagtcagtagag 224  Q
    |||||||||| ||||| ||||||||||||||||| |||||||    
T  15243113 gggtgtgtacctgcagacactccgacgctcaagtaagtagag 15243072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 36639551 - 36639592
Alignment:
Q  183 gggtgtgtacatgcaggcactccgacgctcaagtcagtagag 224  Q
    |||||||||| |||||||||| |||||||||||| |||||||    
T  36639551 gggtgtgtacctgcaggcacttcgacgctcaagttagtagag 36639592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 54865 - 54768
Alignment:
Q  95 acctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtgtgtac 192  Q
    |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||    
T  54865 acctgatcagaaggtgactgccggtgtcgtgaatgtggcggtggtgacggtggttgaatacgtcagaatgcttcttcgagcggatggggggtgtgtac 54768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 14910520 - 14910613
Alignment:
Q  143 ggtggttgaatacgtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||| |||| ||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14910520 ggtggtagaatccgtcagaatgcttcttggagcagatggggggtgtgtacatgcaggcactccgacgctcaagtaagtagagatcagagagtga 14910613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 12738428 - 12738502
Alignment:
Q  161 aatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtg 235  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  12738428 aatgcttcttggagcggatggagggtgtgtacctgcaggcactccgacgctcaagtaagtagagatcagagagtg 12738502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 29095294 - 29095208
Alignment:
Q  150 gaatacgtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||||||||||||||||||||||| |||||| |||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||    
T  29095294 gaatacgtcagaatgcttcttggagcggatggggggtgtgtacctgcagacactccgacgctcaagtcagtagcgatcaaagagtga 29095208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 88 - 233
Target Start/End: Original strand, 8305922 - 8306067
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||||||||| |||||||||||||||||   |||||||||||||  |   ||||||  ||| |  || |||||||||| ||| |||||| |||||    
T  8305922 tgatcgtacctgatcagaaggtgactgtcggtgctttgaatgtggtggtcttagtggtggtgaaatgcaacaaaatgcttctttgagcggatggggggtg 8306021  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  8306022 tgtacctgcaggcactccgacgctcaagtaagtagagatcagagag 8306067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 143 - 235
Target Start/End: Original strand, 29482506 - 29482598
Alignment:
Q  143 ggtggttgaatacgtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtg 235  Q
    |||||| ||||  |||||||||||||||||||  || || |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  29482506 ggtggtagaatgtgtcagaatgcttcttggagcagacggggggtgtgtacctgcaggcgctccgacgctcaagtaagtagagatcagagagtg 29482598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 4409127 - 4409199
Alignment:
Q  161 aatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||||||||||||| |||||| | |||||||| ||||||||||||||| ||||||| ||||||||||||||||    
T  4409127 aatgcttcttggagcggatggggtgtgtgtacctgcaggcactccgacactcaagtaagtagagatcagagag 4409199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 15119986 - 15119915
Alignment:
Q  161 aatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||| ||||||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  15119986 aatgtttcttggagcggatgg-gggtgtgtacctgcaggcactccgacgctcaagtaagtagagatcagagag 15119915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 14479909 - 14479999
Alignment:
Q  143 ggtggttgaatacgtca-gaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagaga 232  Q
    ||||||||||| | ||| ||||||||||||||  ||  || |||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  14479909 ggtggttgaatgcttcaagaatgcttcttggaacggcgggggggtgtgtacctgcaggcactccgacgctgaagtcagtagagatcagaga 14479999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 7968758 - 7968691
Alignment:
Q  166 ttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    ||||||||| |||||| |||||| ||| ||||||||||||||||||||||| |||||||||| |||||    
T  7968758 ttcttggagcggatggggggtgtctacctgcaggcactccgacgctcaagtaagtagagatcggagag 7968691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 3876245 - 3876338
Alignment:
Q  143 ggtggttgaatacgtca-gaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||||||||||||| | || |||||||||||  ||  || |||||||||| |||||||||||| |||||||||||||||||| | |||||||||    
T  3876245 ggtggttgaatacgtaaagagtgcttcttggaacggtagg-gggtgtgtacctgcaggcactccaacgctcaagtcagtagaggttagagagtga 3876338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 18043274 - 18043343
Alignment:
Q  163 tgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||||||||||| || ||| |||||||||| ||||||||||| ||||||||||| |||||| |||||||||    
T  18043274 tgcttcttggagcggctgg-gggtgtgtacctgcaggcactctgacgctcaagtaagtagaaatcagagag 18043343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 17748791 - 17748718
Alignment:
Q  159 agaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagaga 232  Q
    |||||||||||||||   |  ||||||||||||| |||| |||||||||| |||||||||||||||||| ||||    
T  17748791 agaatgcttcttggaacagcgggagggtgtgtacctgcatgcactccgacactcaagtcagtagagatctgaga 17748718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 24438915 - 24438779
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||||||||| |||||||||||||||||   |||||| ||||||      ||||||  ||| || || ||||||||||||||  ||||  |||||    
T  24438915 tgatcgtacctgatcagaaggtgactgtcggtgctttgaatgcggtggtttcagtggtggtgaaatgcgccaaaatgcttcttggagcagatgtggggtg 24438816  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagag 224  Q
    | ||| |||| |||||||||||||||||| |||||||    
T  24438815 tctacctgcaagcactccgacgctcaagtaagtagag 24438779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 31344428 - 31344376
Alignment:
Q  178 atggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcaga 230  Q
    |||| |||||||||||||||  ||||||||||||||||||||||||| |||||    
T  31344428 atggcgggtgtgtacatgcatacactccgacgctcaagtcagtagagttcaga 31344376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 7412311 - 7412358
Alignment:
Q  183 gggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcaga 230  Q
    |||||||||| ||||| ||||||||||||||||||||||||| |||||    
T  7412311 gggtgtgtacctgcagacactccgacgctcaagtcagtagagttcaga 7412358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 18735916 - 18735998
Alignment:
Q  143 ggtggttgaatacgtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagat 226  Q
    |||||| ||||  ||||||||||||||||||| | | || |||||||||| | ||| ||||||||||||||||| |||||||||    
T  18735916 ggtggtagaatgtgtcagaatgcttcttggagcgaaagg-gggtgtgtacctacagacactccgacgctcaagtaagtagagat 18735998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 19860282 - 19860243
Alignment:
Q  197 aggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  19860282 aggcactctgacgctcaagtaagtagagatcagagagtga 19860243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 18258836 - 18258786
Alignment:
Q  186 tgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||||| |||||||||||| || ||||||| |||||| ||||||||||||    
T  18258836 tgtgtacctgcaggcactccaacactcaagtaagtagaaatcagagagtga 18258786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 23574364 - 23574402
Alignment:
Q  198 ggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  23574364 ggcactccgacgctcaagtatgtagagatcagagagtga 23574402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 18728837 - 18728929
Alignment:
Q  143 ggtggttgaatacgtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||| |||| ||||||| |||||||||||| | | || |||||||||  ||||| |||||  || ||||||| ||||||||||| |||||||    
T  18728837 ggtggtagaatgcgtcagattgcttcttggagcgaaagg-gggtgtgtatctgcagacactctaacactcaagtaagtagagatcatagagtga 18728929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 15369846 - 15369814
Alignment:
Q  202 ctccgacgctcaagtcagtagagatcagagagt 234  Q
    ||||||||||||||| |||||||||||||||||    
T  15369846 ctccgacgctcaagttagtagagatcagagagt 15369814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 1380 - 1232
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||||||||  |||||||||||||||||   | |||| ||||||  |   | |||| |||| |||||| |||||||||||||||||||| |||||    
T  1380 tgatcgtacctgattagaaggtgactgtcggtgctttaaatgcggtggttttagtgctggtagaatgcgtcaggatgcttcttggagtggatggggggtg 1281  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  1280 tgtacctgcaggcactccgacgctcaagtcagtagagatcagtgagtga 1232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 4536 - 4388
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||||||||| |||||||||||||||||   | |||| ||||||      |||||| ||||||||||||||||||||||||| |||||| |||||    
T  4536 tgatcgtacctgatcagaaggtgactgtcggtgctttaaatgcggtggtttatgtggtggtggaatacgtcagaatgcttcttggagcggatggggggtg 4437  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||| | ||||||||  ||||||||||| |||||||||||||||||||    
T  4436 tgtaccttcaggcactttgacgctcaagtaagtagagatcagagagtga 4388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 15279 - 15373
Alignment:
Q  142 cggtggttgaatacgtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||||| |||| | |||||||||||||||||| |||||| ||||||||||||| |||||| ||||||||||||| |||||||||||||||||||    
T  15279 cggtggtagaatgcatcagaatgcttcttggagcggatggggggtgtgtacatgaaggcacgccgacgctcaagtaagtagagatcagagagtga 15373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 1562 - 1608
Alignment:
Q  183 gggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcag 229  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||    
T  1562 gggtgtgtacctgcaggcactccgacgctcaagtaagtagagatcag 1608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 7454949 - 7454858
Alignment:
Q  143 ggtggttgaatacgtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||| ||||||| || |||||||||||||| ||||||  ||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  7454949 ggtggtagaatacgacataatgcttcttggagcggatgg--ggtgtgtacctgcaggcactccgacgctcaagtaagtagagatcagagagtga 7454858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 7999511 - 7999658
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| |||||||||| ||||||||||| || || | | ||||| |||||   || |||||| |||| ||||| ||| | |||||||| |||||| |||||    
T  7999511 tgatcgtacctgatcagaaggtgactgccgctgccttaaatgtagtggtttagatggtggtggaatgcgtcataatacctcttggagcggatgg-gggtg 7999609  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||| |||| ||||||||| ||||||||||||||||||||||||||||    
T  7999610 tgtacctgcatgcactccgatgctcaagtcagtagagatcagagagtga 7999658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 1788576 - 1788659
Alignment:
Q  152 atacgtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||||||||||||||||||||| |||||| ||| ||||||  | ||||||||||||||| ||||||||||||||||||||||||    
T  1788576 atacgtcagaatgcttcttggagcggatgggggg-gtgtaccggtaggcactccgacgctaaagtcagtagagatcagagagtga 1788659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 17775639 - 17775711
Alignment:
Q  161 aatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||||||||||||| |||||| |||||||||| |||||||||| |||||||||||| ||||||||||||||||    
T  17775639 aatgcttcttggagcggatggggggtgtgtacctgcaggcacttcgacgctcaagtaagtagagatcagagag 17775711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 2086009 - 2085939
Alignment:
Q  163 tgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||||||||||| |||||| |||||||||| |||||||||||||| |||||||| ||||||||||||||||    
T  2086009 tgcttcttggagcggatggggggtgtgtacctgcaggcactccgatgctcaagtaagtagagatcagagag 2085939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 33273845 - 33273698
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggtg 187  Q
    |||| ||| |||||| |||||||||||||||||   |||||| ||||||   |  |||||| | || |||||||||||||||| ||| | |||| |||||    
T  33273845 tgatcgtatctgatcagaaggtgactgtcggtgctttgaatgcggtggtttaggtggtggtaggatgcgtcagaatgcttcttagagcgaatgg-gggtg 33273747  T
Q  188 tgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||| ||||| ||||||||||||||||| ||||||| ||| |||||||    
T  33273746 tgtacctgcagacactccgacgctcaagtaagtagaggtcaaagagtga 33273698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 32009280 - 32009210
Alignment:
Q  162 atgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    ||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  32009280 atgcttcttggagcggatgg-gggtgtgtacctgcaggcactccgacgctcaagtaagtagagatcatagag 32009210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 18040749 - 18040677
Alignment:
Q  161 aatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||||||||| ||| |||||  |||||||||| |||||||||||||||||| |||| || |||||||||||||    
T  18040749 aatgcttcttagagcggatgaggggtgtgtacctgcaggcactccgacgcttaagtaagcagagatcagagag 18040677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 18574288 - 18574217
Alignment:
Q  161 aatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||||||||||||| ||||| ||||||||||| ||||  ||||||||||||||||| ||||||||||| ||||    
T  18574288 aatgcttcttggagcggatg-agggtgtgtacctgcaaacactccgacgctcaagtaagtagagatcaaagag 18574217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 24033696 - 24033770
Alignment:
Q  161 aatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||||||||||||  ||||| |||||||||| ||||||||||| ||| ||||||| ||||||||| |||||||||    
T  24033696 aatgcttcttggagcagatgg-gggtgtgtacctgcaggcactctgacactcaagtaagtagagattagagagtga 24033770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 11709327 - 11709376
Alignment:
Q  187 gtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  11709327 gtgtacctgcaggcaccccgacgctcaagtcagtagagatcagatagtga 11709376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 10533036 - 10532988
Alignment:
Q  183 gggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagag 231  Q
    |||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  10533036 gggtgtgtacctgcaggcactcagacgctcaagtaagtagagatcagag 10532988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 25820645 - 25820691
Alignment:
Q  88 tgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtg 134  Q
    |||| |||||||||| ||||||||||| |||||||||||||||||||    
T  25820645 tgatcgtacctgatcagaaggtgactgccggtgtcgtgaatgtggtg 25820691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 9251443 - 9251492
Alignment:
Q  181 gagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcaga 230  Q
    |||||||||||| ||||| ||||||||||||||||||| ||||| |||||    
T  9251443 gagggtgtgtacctgcagacactccgacgctcaagtcaatagaggtcaga 9251492  T

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Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 14056168 - 14056119
Alignment:
Q  187 gtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||| |||||||  |||||||||||||| |||||||||||||||||||    
T  14056168 gtgtacctgcaggcgttccgacgctcaagttagtagagatcagagagtga 14056119  T

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Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 9555114 - 9555067
Alignment:
Q  183 gggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcaga 230  Q
    |||||||||| ||||  ||||||||||||||||||||||||| |||||    
T  9555114 gggtgtgtacctgcatacactccgacgctcaagtcagtagagttcaga 9555067  T

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Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 22906440 - 22906398
Alignment:
Q  183 gggtgtgtacatgcaggcactccgacgctcaagtcagtagaga 225  Q
    |||||||||| || || ||||||||||||||||||||||||||    
T  22906440 gggtgtgtacctgaagacactccgacgctcaagtcagtagaga 22906398  T

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Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 41281094 - 41281000
Alignment:
Q  143 ggtggttgaatacgtcagaatgctt-cttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||| |||| | ||||||||||| ||||||| | |||| || || |||| ||||  |||||| || ||||||| |||||||||||||||||||    
T  41281094 ggtggtagaatgcatcagaatgctttcttggagcgaatgggggatgcgtacctgcaaacactccaacactcaagtaagtagagatcagagagtga 41281000  T

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Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 13770835 - 13770798
Alignment:
Q  187 gtgtacatgcaggcactccgacgctcaagtcagtagag 224  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  13770835 gtgtacttgcagacactccgacgctcaagtcagtagag 13770798  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 22282347 - 22282307
Alignment:
Q  184 ggtgtgtacatgcaggcactccgacgctcaagtcagtagag 224  Q
    ||||||||| ||||| ||||| |||||||||||||||||||    
T  22282347 ggtgtgtacctgcagacactctgacgctcaagtcagtagag 22282307  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 37296737 - 37296701
Alignment:
Q  183 gggtgtgtacatgcaggcactccgacgctcaagtcag 219  Q
    |||||||||||||||  ||||||||||||||||||||    
T  37296737 gggtgtgtacatgcatacactccgacgctcaagtcag 37296701  T

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Target: scaffold0008 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 253241 - 253321
Alignment:
Q  156 gtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||||||||||||||||  |||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  253241 gtcagaatgcttcttggaacggatggggggtgtgtacctgcagacactccgacgctcaagtaagtagagatcagagagtga 253321  T

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Target: scaffold0008; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 242600 - 242681
Alignment:
Q  155 cgtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||| |||||||||||||  |||||| |||||||||| || |||||||||| ||||||||| ||||| ||| |||||||||    
T  242600 cgtcacaatgcttcttggaacggatggggggtgtgtacctgtaggcactccggcgctcaagtaagtagcgattagagagtga 242681  T

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Target: scaffold0170 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 16601 - 16508
Alignment:
Q  143 ggtggttgaatacgtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||| ||||| |||||||||||||||||||  ||||| |||||||||| | |||||||||| ||| ||||||| ||||||||||||||||||    
T  16601 ggtggtggaataagtcagaatgcttcttggagcagatggggggtgtgtacctacaggcactccaacgttcaagtcggtagagatcagagagtga 16508  T

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Target: scaffold0042 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 234
Target Start/End: Original strand, 68532 - 68679
Alignment:
Q  87 atgatagtacctgatcggaaggtgactgtcggtgtcgtgaatgtggtggtggtgacggtggttgaatacgtcagaatgcttcttggagtggatggagggt 186  Q
    ||||| |||||||||| ||||||||||||| |||   ||||||  |||||    |||||||| ||||| ||||||||||||||||||  | |||| ||||    
T  68532 atgatcgtacctgatcagaaggtgactgtcagtgctttgaatgcagtggtttatacggtggtggaatatgtcagaatgcttcttggaacgaatggggggt 68631  T
Q  187 gtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagt 234  Q
    |||||| ||||| |||||| | |||||||| ||||||||||| |||||    
T  68632 gtgtacctgcagacactccaatgctcaagtaagtagagatcatagagt 68679  T

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Target: scaffold0042; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 74767 - 74853
Alignment:
Q  150 gaatacgtcagaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||||||||||||||||||| |   | ||||  ||||||||| ||||| ||||||||||||||||  | |||||||||||||||||    
T  74767 gaatacgtcagaatgcttcttaggacgaatgggtggtgtgtacctgcagacactccgacgctcaagcaaatagagatcagagagtga 74853  T

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Target: scaffold0989 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 1790 - 1718
Alignment:
Q  161 aatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||||| ||||||| |||||| |||||||||  |||||||||||||||| |||||| ||||||||||||||||    
T  1790 aatgctacttggagcggatggggggtgtgtatctgcaggcactccgacgttcaagtaagtagagatcagagag 1718  T

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Target: scaffold0034 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 47684 - 47612
Alignment:
Q  161 aatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    |||||||||||||| | |||| |||||||||| | |||||| |||||||||||||| ||||||||||||||||    
T  47684 aatgcttcttggagcgaatggggggtgtgtacctacaggcattccgacgctcaagtaagtagagatcagagag 47612  T

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Target: scaffold0063 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 49467 - 49421
Alignment:
Q  186 tgtgtacatgcaggcactccgacgctcaagtcagtagagatcagaga 232  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||    
T  49467 tgtgtacctgcaggcactcagacgctcaagtcagtagagatcagaga 49421  T

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Target: scaffold0013 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 37467 - 37417
Alignment:
Q  186 tgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    ||||||| ||||||| || ||||||||||||||||||||||||||||||||    
T  37467 tgtgtacctgcaggcgcttcgacgctcaagtcagtagagatcagagagtga 37417  T

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Target: scaffold0299 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 19082 - 19153
Alignment:
Q  161 aatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagag 233  Q
    ||||||||||||||||||||| |||| ||||| ||||| ||||  ||||||||||| |||||| |||||||||    
T  19082 aatgcttcttggagtggatgg-gggtatgtacctgcagacactatgacgctcaagtaagtagatatcagagag 19153  T

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Target: scaffold0025 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 86647 - 86554
Alignment:
Q  143 ggtggttgaatacgtca-gaatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||| |||| ||||| ||||||||||||||  || ||| |||||||||| ||||||| ||||||  ||||| ||| |||||||||||||||||    
T  86647 ggtggtagaatgcgtcaagaatgcttcttggaacgg-tggggggtgtgtacctgcaggcgctccgatactcaattcattagagatcagagagtga 86554  T

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Target: scaffold0192 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 12278 - 12331
Alignment:
Q  183 gggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||||||| ||| ||| ||||||| ||||||| |||||||||||||||||||    
T  12278 gggtgtgtacctgccggcgctccgacactcaagtaagtagagatcagagagtga 12331  T

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Target: scaffold0111 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 3070 - 3021
Alignment:
Q  187 gtgtacatgcaggcactccgacgctcaagtcagtagagatcagagagtga 236  Q
    |||||| ||||||| ||||||||||||||| ||||||||| |||||||||    
T  3070 gtgtacctgcaggcgctccgacgctcaagtaagtagagattagagagtga 3021  T

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Target: scaffold0150 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 30325 - 30258
Alignment:
Q  161 aatgcttcttggagtggatggagggtgtgtacatgcaggcactccgacgctcaagtcagtagagatcag 229  Q
    |||||||||||||| |||||| |||||||||| ||||| ||| | ||||||||||| |||||| |||||    
T  30325 aatgcttcttggagcggatgg-gggtgtgtacctgcagacacgctgacgctcaagtaagtagatatcag 30258  T

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Target: scaffold0043 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 56839 - 56798
Alignment:
Q  183 gggtgtgtacatgcaggcactccgacgctcaagtcagtagag 224  Q
    |||||||||| ||||| |||| ||||||||||||||||||||    
T  56839 gggtgtgtacctgcagacacttcgacgctcaagtcagtagag 56798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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