View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2030_high_4 (Length: 490)

Name: NF2030_high_4
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2030_high_4
NF2030_high_4
[»] chr3 (36 HSPs)
chr3 (1-472)||(33914503-33914970)
chr3 (257-472)||(21017840-21018056)
chr3 (226-472)||(19219147-19219394)
chr3 (225-435)||(13911196-13911407)
chr3 (317-470)||(27415194-27415345)
chr3 (226-469)||(1475218-1475463)
chr3 (294-462)||(2729564-2729733)
chr3 (257-472)||(25919407-25919616)
chr3 (225-472)||(8402488-8402734)
chr3 (225-462)||(11521071-11521308)
chr3 (257-462)||(12573252-12573459)
chr3 (257-462)||(13549716-13549923)
chr3 (291-469)||(25883100-25883279)
chr3 (339-472)||(28422498-28422631)
chr3 (261-470)||(10341763-10341963)
chr3 (316-462)||(11474868-11475015)
chr3 (250-413)||(16970196-16970359)
chr3 (309-472)||(21829069-21829232)
chr3 (234-369)||(12409399-12409533)
chr3 (303-472)||(26297758-26297925)
chr3 (323-436)||(18474200-18474312)
chr3 (302-411)||(23007062-23007172)
chr3 (371-472)||(26387781-26387881)
chr3 (398-472)||(16970566-16970640)
chr3 (303-384)||(19263922-19264004)
chr3 (317-413)||(19545978-19546075)
chr3 (371-468)||(26797189-26797284)
chr3 (310-385)||(18065832-18065905)
chr3 (271-418)||(4780677-4780824)
chr3 (325-472)||(23908207-23908354)
chr3 (322-391)||(4775724-4775794)
chr3 (357-453)||(5632497-5632585)
chr3 (339-434)||(30493238-30493334)
chr3 (226-317)||(17637035-17637126)
chr3 (314-467)||(33577754-33577907)
chr3 (261-329)||(10303427-10303495)
[»] chr7 (37 HSPs)
chr7 (226-472)||(7142030-7142277)
chr7 (250-472)||(23124857-23125079)
chr7 (256-472)||(29544481-29544698)
chr7 (259-469)||(20470749-20470960)
chr7 (289-470)||(1255151-1255333)
chr7 (271-469)||(22067741-22067944)
chr7 (257-471)||(7815285-7815501)
chr7 (331-472)||(9761351-9761493)
chr7 (331-472)||(9801810-9801952)
chr7 (225-469)||(21471728-21471972)
chr7 (309-472)||(30405611-30405772)
chr7 (310-472)||(20461584-20461746)
chr7 (312-410)||(21545797-21545896)
chr7 (309-471)||(7372504-7372666)
chr7 (309-472)||(3268902-3269065)
chr7 (291-405)||(315182-315297)
chr7 (295-469)||(10292755-10292930)
chr7 (355-472)||(4977756-4977874)
chr7 (309-472)||(1074467-1074631)
chr7 (354-456)||(24596956-24597058)
chr7 (339-472)||(5312722-5312855)
chr7 (371-472)||(8308968-8309068)
chr7 (256-358)||(20446200-20446303)
chr7 (271-408)||(2632436-2632574)
chr7 (323-472)||(9755829-9755972)
chr7 (309-402)||(4828806-4828900)
chr7 (323-472)||(9800625-9800768)
chr7 (324-451)||(2353199-2353326)
chr7 (309-435)||(7361605-7361733)
chr7 (420-472)||(9070515-9070567)
chr7 (256-391)||(46054660-46054796)
chr7 (354-436)||(12358734-12358816)
chr7 (220-472)||(7494637-7494875)
chr7 (309-436)||(17881471-17881598)
chr7 (402-469)||(2630415-2630482)
chr7 (423-472)||(7777975-7778024)
chr7 (312-407)||(18496583-18496679)
[»] chr5 (38 HSPs)
chr5 (225-474)||(24841684-24841934)
chr5 (256-472)||(18222455-18222672)
chr5 (291-461)||(16634043-16634214)
chr5 (226-472)||(25594628-25594875)
chr5 (234-456)||(17027467-17027690)
chr5 (250-472)||(17381980-17382194)
chr5 (261-472)||(11274266-11274479)
chr5 (257-470)||(24517317-24517522)
chr5 (230-469)||(12339953-12340191)
chr5 (226-435)||(15205577-15205785)
chr5 (226-472)||(22229741-22229983)
chr5 (268-472)||(26330005-26330209)
chr5 (289-470)||(25680591-25680764)
chr5 (309-472)||(20083480-20083645)
chr5 (256-472)||(16622612-16622819)
chr5 (256-472)||(26070436-26070652)
chr5 (309-462)||(20694655-20694808)
chr5 (309-462)||(24410876-24411029)
chr5 (394-469)||(25075251-25075326)
chr5 (394-469)||(25133220-25133295)
chr5 (256-334)||(30072140-30072218)
chr5 (340-431)||(16603590-16603682)
chr5 (256-411)||(22967839-22967995)
chr5 (309-404)||(23157792-23157888)
chr5 (311-435)||(7742843-7742967)
chr5 (371-455)||(22754972-22755056)
chr5 (313-392)||(24268574-24268654)
chr5 (313-392)||(24345203-24345283)
chr5 (354-436)||(25367654-25367736)
chr5 (371-436)||(11997866-11997931)
chr5 (309-436)||(19331526-19331651)
chr5 (396-472)||(30072218-30072294)
chr5 (371-468)||(19763833-19763927)
chr5 (342-462)||(30790824-30790944)
chr5 (339-392)||(18873059-18873111)
chr5 (356-434)||(18178162-18178241)
chr5 (395-459)||(24279575-24279638)
chr5 (395-459)||(24382576-24382639)
[»] chr1 (35 HSPs)
chr1 (225-462)||(30675414-30675653)
chr1 (250-472)||(26657432-26657655)
chr1 (223-472)||(11769930-11770180)
chr1 (226-469)||(8247596-8247840)
chr1 (226-468)||(25730511-25730754)
chr1 (322-472)||(25727845-25727996)
chr1 (322-472)||(25736253-25736404)
chr1 (256-472)||(23223373-23223591)
chr1 (256-472)||(18300939-18301158)
chr1 (256-433)||(50047143-50047321)
chr1 (257-472)||(34381671-34381889)
chr1 (250-389)||(12810278-12810418)
chr1 (250-469)||(30781715-30781936)
chr1 (317-472)||(26102080-26102235)
chr1 (290-453)||(25494443-25494598)
chr1 (226-407)||(12423915-12424097)
chr1 (355-472)||(31313613-31313730)
chr1 (226-472)||(23519704-23519939)
chr1 (258-469)||(18391046-18391257)
chr1 (257-424)||(25266329-25266496)
chr1 (225-406)||(21451818-21451999)
chr1 (309-472)||(25126495-25126658)
chr1 (355-472)||(52271181-52271298)
chr1 (309-467)||(15416915-15417073)
chr1 (313-472)||(19257740-19257899)
chr1 (407-462)||(23521675-23521730)
chr1 (324-472)||(27461117-27461266)
chr1 (271-350)||(24903354-24903433)
chr1 (324-472)||(26854256-26854402)
chr1 (322-414)||(13807746-13807839)
chr1 (340-472)||(21548694-21548826)
chr1 (317-472)||(18795204-18795359)
chr1 (311-472)||(15298806-15298967)
chr1 (312-397)||(19884190-19884276)
chr1 (250-307)||(25777933-25777990)
[»] chr4 (36 HSPs)
chr4 (257-472)||(34864231-34864443)
chr4 (228-472)||(15192137-15192382)
chr4 (261-472)||(25315167-25315379)
chr4 (227-462)||(9782929-9783165)
chr4 (346-472)||(17026632-17026759)
chr4 (225-472)||(27302709-27302956)
chr4 (259-462)||(18897956-18898151)
chr4 (309-472)||(19601813-19601977)
chr4 (268-412)||(1676291-1676436)
chr4 (268-412)||(1682819-1682964)
chr4 (250-386)||(5906742-5906879)
chr4 (228-469)||(10320159-10320400)
chr4 (229-373)||(12111367-12111510)
chr4 (309-472)||(9288225-9288388)
chr4 (371-471)||(5676277-5676377)
chr4 (378-470)||(13064511-13064602)
chr4 (255-472)||(46647157-46647373)
chr4 (366-472)||(31859837-31859942)
chr4 (312-472)||(10576471-10576631)
chr4 (371-472)||(29437549-29437649)
chr4 (322-413)||(13275739-13275831)
chr4 (256-427)||(22119608-22119779)
chr4 (305-472)||(26159767-26159934)
chr4 (262-353)||(4953650-4953741)
chr4 (299-468)||(47024705-47024866)
chr4 (309-436)||(21167744-21167871)
chr4 (396-462)||(12111272-12111337)
chr4 (256-333)||(25050141-25050218)
chr4 (371-472)||(33519108-33519208)
chr4 (317-461)||(23353646-23353789)
chr4 (322-412)||(1695843-1695934)
chr4 (371-472)||(17187253-17187351)
chr4 (256-391)||(24925767-24925903)
chr4 (263-326)||(1696652-1696715)
chr4 (256-406)||(17339815-17339966)
chr4 (309-434)||(21077248-21077373)
[»] chr8 (38 HSPs)
chr8 (225-472)||(16052213-16052461)
chr8 (256-472)||(32239249-32239466)
chr8 (256-405)||(12956451-12956601)
chr8 (250-392)||(14977122-14977266)
chr8 (224-467)||(16054224-16054468)
chr8 (250-471)||(24120187-24120401)
chr8 (291-456)||(5570093-5570259)
chr8 (256-405)||(28901343-28901493)
chr8 (261-471)||(28902056-28902267)
chr8 (271-469)||(29047258-29047454)
chr8 (257-462)||(13081880-13082090)
chr8 (309-472)||(24584661-24584824)
chr8 (225-471)||(22894468-22894718)
chr8 (309-472)||(35135357-35135522)
chr8 (351-472)||(24696638-24696760)
chr8 (309-463)||(27097745-27097901)
chr8 (289-451)||(26882403-26882566)
chr8 (339-472)||(30543806-30543939)
chr8 (316-462)||(14424759-14424905)
chr8 (354-472)||(28074573-28074691)
chr8 (312-462)||(10867006-10867156)
chr8 (354-472)||(29291830-29291948)
chr8 (339-472)||(5153803-5153936)
chr8 (355-471)||(28260227-28260343)
chr8 (372-471)||(28859176-28859275)
chr8 (290-450)||(31436475-31436635)
chr8 (342-472)||(11437467-11437598)
chr8 (256-363)||(6358660-6358767)
chr8 (352-472)||(30851036-30851156)
chr8 (226-389)||(11310223-11310387)
chr8 (311-456)||(6888145-6888287)
chr8 (257-320)||(28252470-28252533)
chr8 (402-472)||(13583456-13583525)
chr8 (362-433)||(31232124-31232193)
chr8 (383-435)||(12358691-12358742)
chr8 (371-436)||(12774815-12774880)
chr8 (383-435)||(12357563-12357614)
chr8 (309-472)||(28292037-28292199)
[»] chr2 (29 HSPs)
chr2 (224-469)||(21505078-21505324)
chr2 (289-473)||(30998766-30998951)
chr2 (288-461)||(35031696-35031870)
chr2 (226-469)||(25473969-25474213)
chr2 (226-469)||(35707735-35707979)
chr2 (225-445)||(28278386-28278606)
chr2 (271-462)||(16593696-16593890)
chr2 (306-468)||(27917923-27918086)
chr2 (309-472)||(17152168-17152332)
chr2 (371-472)||(27417199-27417300)
chr2 (296-462)||(15829136-15829290)
chr2 (306-472)||(19541049-19541215)
chr2 (257-469)||(1733063-1733267)
chr2 (250-469)||(19949493-19949714)
chr2 (322-467)||(39730475-39730620)
chr2 (272-404)||(21843006-21843139)
chr2 (305-462)||(18236249-18236406)
chr2 (339-472)||(22510991-22511124)
chr2 (272-404)||(21844633-21844766)
chr2 (256-457)||(32619604-32619793)
chr2 (322-472)||(24187994-24188148)
chr2 (314-472)||(24047402-24047560)
chr2 (314-470)||(21849012-21849167)
chr2 (316-462)||(34063787-34063938)
chr2 (371-462)||(17415109-17415200)
chr2 (322-470)||(18818725-18818873)
chr2 (309-408)||(32276513-32276613)
chr2 (398-472)||(1732656-1732729)
chr2 (396-472)||(15454475-15454550)
[»] scaffold0171 (2 HSPs)
scaffold0171 (226-472)||(6128-6374)
scaffold0171 (250-472)||(21353-21576)
[»] scaffold0386 (2 HSPs)
scaffold0386 (257-462)||(13017-13223)
scaffold0386 (261-468)||(8649-8857)
[»] scaffold0188 (1 HSPs)
scaffold0188 (256-472)||(26891-27107)
[»] chr6 (23 HSPs)
chr6 (271-462)||(15574902-15575093)
chr6 (301-462)||(17860394-17860556)
chr6 (259-394)||(13759465-13759602)
chr6 (257-472)||(16387191-16387400)
chr6 (256-405)||(16527858-16528002)
chr6 (377-472)||(24507378-24507473)
chr6 (256-405)||(30355288-30355437)
chr6 (255-472)||(26512715-26512931)
chr6 (255-472)||(26517831-26518047)
chr6 (298-470)||(15998515-15998688)
chr6 (290-469)||(32930412-32930591)
chr6 (362-468)||(9396547-9396652)
chr6 (359-436)||(9943122-9943199)
chr6 (256-433)||(14924393-14924570)
chr6 (355-472)||(26499783-26499900)
chr6 (256-408)||(20495794-20495946)
chr6 (352-472)||(24617569-24617689)
chr6 (256-435)||(12972358-12972537)
chr6 (276-405)||(22262332-22262462)
chr6 (256-317)||(15576254-15576315)
chr6 (339-435)||(16439504-16439599)
chr6 (322-468)||(1755502-1755648)
chr6 (309-458)||(14768219-14768368)
[»] scaffold0065 (1 HSPs)
scaffold0065 (377-472)||(12328-12423)
[»] scaffold0337 (1 HSPs)
scaffold0337 (377-472)||(1892-1987)
[»] scaffold0011 (1 HSPs)
scaffold0011 (341-462)||(228132-228252)
[»] scaffold1149 (1 HSPs)
scaffold1149 (305-435)||(1796-1926)
[»] scaffold0190 (1 HSPs)
scaffold0190 (309-463)||(11643-11797)
[»] scaffold0043 (1 HSPs)
scaffold0043 (309-434)||(58760-58885)
[»] scaffold0002 (2 HSPs)
scaffold0002 (381-469)||(447064-447152)
scaffold0002 (226-347)||(446937-447058)
[»] scaffold0036 (1 HSPs)
scaffold0036 (386-453)||(29294-29359)
[»] scaffold0650 (1 HSPs)
scaffold0650 (415-472)||(5705-5762)
[»] scaffold0185 (1 HSPs)
scaffold0185 (309-436)||(1458-1585)


Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 33914970 - 33914503
Alignment:
Q  1 atcgtcattaaaggcaacatagtcattacgtttcaacatattgggaggtggtttaatccacctgactatagaagcatactctgctatagattatggagtt 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  33914970 atcgtcattaaaggcaacatagtcattacatttcaacatattgggaggtagtttaatccacctgactatagaaacgtactctgctatagattatggagtt 33914871  T
Q  101 acaaacatgttattggttgattgcaatacagaaggaagacaaaagcacatgttaattgacgtagtttcttttacggtttcatccccttaatgtagcttca 200  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  33914870 acaaacatgtcattggttgattgcaatgcagaaggaagacaaaagcacatggtaattgacgtagtttcttttacagtttcatccccttaatgtagcttca 33914771  T
Q  201 taccgtactaacgactctatggtagtgatgacagagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||    
T  33914770 taccgtactaacgactctatggtagtgatgacagagcatcacatgccactttttactatgtttttagtacttttctttgcatttcaagacaaataagatg 33914671  T
Q  301 agagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcactttatcctaaatcatgcaactctataggtg 400  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    ||    
T  33914670 agagttataggagttgtcaacggtttgaggaacatattgtattgtttttactcgagtcgttgtaattcacgttatcccaaatcatgcaactcta----tg 33914575  T
Q  401 ttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33914574 ttttgagtgttttgtagtgagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggatcaaggatatg 33914503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 257 - 472
Target Start/End: Original strand, 21017840 - 21018056
Alignment:
Q  257 tatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgag 356  Q
    |||||||||| || ||||||||| |||| || | ||||||||||||||||| |||||||| |||   ||||||||||||||  |||| |||| |  ||||    
T  21017840 tatgtttttagtatttttctttgcatttgaagaaaaataagatgagagttagaggagttggcaataatttgaggaacatattatattattttcaaccgag 21017939  T
Q  357 tcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgt 455  Q
    ||||||||||||| ||| |||||| |||||||||||||| | |||||||||||||||| || | ||||||||||||| || || ||||||||||| ||||    
T  21017940 tcgttgtaattcagttttatcctagatcatgcaactctaaatgtgttttgagtgttttgtattgagaaatcatgtaattcaacaaatcaagacattacgt 21018039  T
Q  456 gaaggattaaggatatg 472  Q
    ||||||| || ||||||    
T  21018040 gaaggatcaatgatatg 21018056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 226 - 472
Target Start/End: Complemental strand, 19219394 - 19219147
Alignment:
Q  226 tgatgacagagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtt 325  Q
    |||||||  ||||||| |||  ||||||  || |||||||| || |||||||||  ||| || | |||||||||||||||||| ||||||||||| ||||    
T  19219394 tgatgacgaagcatcatatgatacttttagctgtgtttttagtatttttctttgcttttgaagataaataagatgagagttattggagttgtcaatggtt 19219295  T
Q  326 tgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaa 424  Q
    |||||| |||||  ||||  ||| ||| ||||||||||||||||| ||||||| |||||||||||| | |||  ||||||||||||||| |||| || ||    
T  19219294 tgaggagcatattttattactttcactagagtcgttgtaattcacttttatccaaaatcatgcaacaccataaatgttttgagtgttttgtagtgaggaa 19219195  T
Q  425 tcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    |||||||||||  | || ||||||||||| |||||||| |||||||||    
T  19219194 tcatgtaaatcttcaaaccaagacatcacatgaaggatcaaggatatg 19219147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 225 - 435
Target Start/End: Original strand, 13911196 - 13911407
Alignment:
Q  225 gtgatgacagagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggt 324  Q
    |||||||| ||| |||| |||  | ||||| ||||||||||| || |||||||||||||| || |||| ||||  ||||| || | |||||||||| |||    
T  13911196 gtgatgacggagaatcaaatgatatttttttctatgtttttagtaattttctttgtatttgaagacaagtaagtagagagatagaagagttgtcaatggt 13911295  T
Q  325 ttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaa 423  Q
    ||||||||||||| |||||||||| ||| || || ||||||||||| ||||||||| |||||||||||  ||| ||||||| |||||||| |||| ||||    
T  13911296 ttgaggaacatatggtattgttttcacttgaatcattgtaattcacttttatcctagatcatgcaacttcatatgtgtttttagtgttttgtagtgagaa 13911395  T
Q  424 atcatgtaaatc 435  Q
    ||||||||||||    
T  13911396 atcatgtaaatc 13911407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 317 - 470
Target Start/End: Original strand, 27415194 - 27415345
Alignment:
Q  317 tcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttat 415  Q
    |||||||||| |||||||||| |||||||||| |||||||||||   |||||||||| ||| ||||||||||||||  |||||||||||||||||||| |    
T  27415194 tcaacggtttaaggaacatattgtattgttttcactcgagtcgt---aattcacttttatcgtaaatcatgcaacttcataggtgttttgagtgttttgt 27415290  T
Q  416 agtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggata 470  Q
    ||| ||||||||||||||| ||| |||||||||||||| | |||||| |||||||    
T  27415291 agtaagaaatcatgtaaatagaccaatcaagacatcacataaaggatcaaggata 27415345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 226 - 469
Target Start/End: Complemental strand, 1475463 - 1475218
Alignment:
Q  226 tgatgacagagcatcacatgccactttttactatgtttttaatactttt-ctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggt 324  Q
    |||||||| ||||||| ||| || ||||  ||||||||||| ||||||| ||||| |||| ||  | |||||||||||||||| ||||||| |||| |||    
T  1475463 tgatgacatagcatcatatgaca-ttttggctatgtttttagtactttttctttgcatttgaagtctaataagatgagagttagaggagttttcaatggt 1475365  T
Q  325 ttgaggaacatatcgtattgtttttactcgagtcgttgtaattcactt-tatcctaaatcatgcaactctataggtgt-tttgagtgttttatagtcaga 422  Q
    |||||||| |||| ||||| |||| |||||||||||||||||||| || ||||||| |||||||||||| || ||| | |||||||||||  |||| |      
T  1475364 ttgaggaatatattgtattattttcactcgagtcgttgtaattcaattatatcctagatcatgcaactccatgggtatatttgagtgtttcgtagtgaag 1475265  T
Q  423 aatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggat 469  Q
    ||| |||||||||  | ||||||||||||| ||||||||| ||||||    
T  1475264 aataatgtaaatcatcaaatcaagacatcatgtgaaggatcaaggat 1475218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 294 - 462
Target Start/End: Complemental strand, 2729733 - 2729564
Alignment:
Q  294 taagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactc 392  Q
    |||||||||| |||||||||||||||| ||||  ||||||||||  ||||||||| ||||||||| |||||||||| ||| |||||||| |||||||||     
T  2729733 taagatgagaattataggagttgtcaatggttcaaggaacatattatattgttttcactcgagtccttgtaattcatttttatcctaaaccatgcaactt 2729634  T
Q  393 tataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggat 462  Q
     ||| |||||||||||||||| |||| | ||||| ||||||||||  ||| |||||||||||| ||||||    
T  2729633 catatgtgttttgagtgttttgtagtgataaatcttgtaaatcgaaaaattaagacatcacgtcaaggat 2729564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 257 - 472
Target Start/End: Complemental strand, 25919616 - 25919407
Alignment:
Q  257 tatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaac--atatcgtattgtttttactcg 354  Q
    |||||||||| ||| |||||||| |||| || ||||||||||||||||||| | || ||||||| ||||||||||||  |||| || ||||||||||| |    
T  25919616 tatgtttttagtacatttctttgaatttgaagacaaataagatgagagttagatgatttgtcaatggtttgaggaacatatattgtgttgtttttacttg 25919517  T
Q  355 agtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcac 453  Q
    |||| | ||||||||| |||||||||||||||||||||| |||| |||||||         |||| || |||||||||||||||| || ||||| |||||    
T  25919516 agtcatcgtaattcacttttatcctaaatcatgcaactccatagatgttttg---------tagtgaggaatcatgtaaatcgacaaaccaagatatcac 25919426  T
Q  454 gtgaaggattaaggatatg 472  Q
     |||||||| |||||||||    
T  25919425 atgaaggatcaaggatatg 25919407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 225 - 472
Target Start/End: Complemental strand, 8402734 - 8402488
Alignment:
Q  225 gtgatgacagagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggt 324  Q
    ||||||||||||||||| |||  | |||  ||||||||||||    ||| ||||| |||| ||  |||||||||||  | ||| |||||||||||| |||    
T  8402734 gtgatgacagagcatcatatgatattttagactatgtttttatgtatttactttgcatttgaaggcaaataagatgtaatttagaggagttgtcaatggt 8402635  T
Q  325 ttgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaa 423  Q
    ||||||||||  | |||||||||| | ||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||||| |||  |||  || |    
T  8402634 ttgaggaacaatttgtattgttttcattcgagtcgttgtaattcatttttatcttaaatcatgcaactccataggtgttttgagtcttt--tagcgagga 8402537  T
Q  424 atcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||| ||||||||||   |||||||||||| |||||||||  ||||||||    
T  8402536 atcgtgtaaatcgatagatcaagacatcaagtgaaggatcgaggatatg 8402488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 225 - 462
Target Start/End: Original strand, 11521071 - 11521308
Alignment:
Q  225 gtgatgacagagcatcacatgccactttttactatgtttttaatactttt-ctttgtatttcaaaacaaataagatgagagttataggagttgtcaacgg 323  Q
    ||||||||||||||||| ||  || ||||  ||||  ||||||||||||| | ||| |||| || | |||||||||||| |||  |||||||||||| ||    
T  11521071 gtgatgacagagcatcatattaca-ttttggctataattttaatactttttcattgcatttgaagaaaaataagatgagcgttggaggagttgtcaatgg 11521169  T
Q  324 tttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcaga 422  Q
    |||||||||||||| ||||| |||||||| || | || |||||||| ||| |||||| ||||||||| || |||| ||||||||||||||| |||| ||     
T  11521170 tttgaggaacatattgtattatttttacttgatttgt-gtaattcagttttatcctagatcatgcaagtccatagttgttttgagtgttttgtagtgagg 11521268  T
Q  423 aatcatgtaaatcgacgaatcaagacatcacgtgaaggat 462  Q
    ||||||||||||| || |||||| |||| ||||| |||||    
T  11521269 aatcatgtaaatcaacaaatcaaaacattacgtggaggat 11521308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 257 - 462
Target Start/End: Original strand, 12573252 - 12573459
Alignment:
Q  257 tatgtttttaatactttt-ctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    |||||||||| ||||||| ||||| |||  || ||||||||||||||||||| | || ||||||| |||||||||||    | |||||||||| ||||||    
T  12573252 tatgtttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggtttgaggaatgctttgtattgttttcactcga 12573351  T
Q  356 gtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacg 454  Q
    | |||||||||||| ||| |||||| |||||||| |||  ||||| |||| |||||||| |||| || ||||||||||||| || ||| ||||||| |||    
T  12573352 gacgttgtaattcatttttatcctagatcatgcagctccgtaggtttttttagtgttttgtagtgaggaatcatgtaaatcaacaaatgaagacattacg 12573451  T
Q  455 tgaaggat 462  Q
    ||||||||    
T  12573452 tgaaggat 12573459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 257 - 462
Target Start/End: Original strand, 13549716 - 13549923
Alignment:
Q  257 tatgtttttaatactttt-ctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    |||||||||| ||||||| ||||| |||  || ||||||||||||||||||| | || ||||||| |||||||||||    | |||||||||| ||||||    
T  13549716 tatgtttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggtttgaggaatgctttgtattgttttcactcga 13549815  T
Q  356 gtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacg 454  Q
    | |||||||||||| ||| |||||| |||||||| |||  ||||| |||| |||||||| |||| || ||||||||||||| || ||| ||||||| |||    
T  13549816 gacgttgtaattcatttttatcctagatcatgcagctccgtaggtttttttagtgttttgtagtgaggaatcatgtaaatcaacaaatgaagacattacg 13549915  T
Q  455 tgaaggat 462  Q
    ||||||||    
T  13549916 tgaaggat 13549923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 291 - 469
Target Start/End: Original strand, 25883100 - 25883279
Alignment:
Q  291 aaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaa 389  Q
    ||||||||||||||| | | ||||||||||   ||||||||||||||  ||||||||| |||||| ||||||||||||| ||| |||||| || ||||||    
T  25883100 aaataagatgagagtcagaagagttgtcaattttttgaggaacatattatattgttttcactcgaatcgttgtaattcagttttatcctagattatgcaa 25883199  T
Q  390 ctctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggat 469  Q
    ||  ||||||||||||||||||||||||| || ||||||||| |||  | ||||||||||||  || |||||| ||||||    
T  25883200 ctacataggtgttttgagtgttttatagtgaggaatcatgtacatcatcaaatcaagacatcttgttaaggatcaaggat 25883279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 339 - 472
Target Start/End: Original strand, 28422498 - 28422631
Alignment:
Q  339 gtattgtttttactcgagtcgttgtaattcactttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgac 438  Q
    |||||||||| | |||| || ||||||||||||||   |||||||||||||||| || |||||||||| |||||| |||| |||||||||||| ||||||    
T  28422498 gtattgttttcattcgaatcattgtaattcacttttatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtagatcgac 28422597  T
Q  439 gaatcaagacatcacgtgaaggattaaggatatg 472  Q
     |||||| ||||||||||||||||| ||||||||    
T  28422598 aaatcaatacatcacgtgaaggattgaggatatg 28422631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 261 - 470
Target Start/End: Original strand, 10341763 - 10341963
Alignment:
Q  261 tttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgt 360  Q
    |||||| ||||||||| || |||| ||| ||||||||||| || ||| |||||||||||| || |||||||||| || |||||||||| |||  ||||||    
T  10341763 tttttagtacttttctctgcatttgaaatcaaataagatgtgaattagaggagttgtcaatgg-ttgaggaacaaattgtattgttttcactaaagtcgt 10341861  T
Q  361 tgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaag 459  Q
    |||||||||| ||||| | |||||||||||||| ||||||||||||         | || |||||||||||||||| || |||| | |||||| ||||||    
T  10341862 tgtaattcacttttattcaaaatcatgcaactccataggtgttttg---------ttgtgagaaatcatgtaaatcaacaaatccaaacatcaagtgaag 10341952  T
Q  460 gattaaggata 470  Q
    |||||||||||    
T  10341953 gattaaggata 10341963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 316 - 462
Target Start/End: Original strand, 11474868 - 11475015
Alignment:
Q  316 gtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgtttta 414  Q
    ||||| |||||||||||| | | ||||| |||| | |||| ||||||||||||| ||| ||||||||||||||||||  ||| ||||||||||| ||||     
T  11474868 gtcaatggtttgaggaactttttgtattattttcattcgactcgttgtaattcaattttatcctaaatcatgcaacttcatatgtgttttgagtcttttt 11474967  T
Q  415 tagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggat 462  Q
    |||| ||||||||||||||||| | || ||||||||||| ||||||||    
T  11474968 tagtgagaaatcatgtaaatcggcaaaacaagacatcacatgaaggat 11475015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 250 - 413
Target Start/End: Original strand, 16970196 - 16970359
Alignment:
Q  250 tttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgttttt 349  Q
    |||| |||||||||||| | ||||||||||||||| || ||||||||| ||||||||||| |||||||| | |||| |||||||| |  |||||| |||     
T  16970196 ttttgactatgtttttagtgcttttctttgtatttgaacacaaataagttgagagttatatgagttgtcgatggttcgaggaacaaacagtattg-tttc 16970294  T
Q  350 actcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgtttt 413  Q
    | |  |||||||||||||||| |||||||||||||||  ||||  || ||||||| |||||||||    
T  16970295 atttaagtcgttgtaattcacgtttatcctaaatcataaaacttcatgggtgtttagagtgtttt 16970359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 309 - 472
Target Start/End: Complemental strand, 21829232 - 21829069
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgcaactctataggtgttttgag 407  Q
    |||||||||||| |||||||||||||| | ||||| |||| | | ||||||||||||||||  ||||||||||||||| |||||  ||| | |||||| |    
T  21829232 aggagttgtcaatggtttgaggaacattttgtattattttcatttgagtcgttgtaattcagttttatcctaaatcatacaacttcatatgagttttggg 21829133  T
Q  408 tgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    | || | |||| ||||||| ||||||||| |||| ||||||||||| ||||| || |||||||||    
T  21829132 tcttgt-tagtgagaaatcttgtaaatcgtcgaaacaagacatcacatgaagtatcaaggatatg 21829069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 234 - 369
Target Start/End: Original strand, 12409399 - 12409533
Alignment:
Q  234 gagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaac 333  Q
    |||||||||||| || |||| ||||| |||||| ||||||| ||||||||| || | ||||||  || ||| || | |||||||||| ||||||| ||||    
T  12409399 gagcatcacatgaca-ttttgactatatttttagtacttttatttgtatttgaagaaaaataacttgggagataaaagagttgtcaatggtttgaagaac 12409497  T
Q  334 atatcgtattgtttttactcgagtcgttgtaattca 369  Q
    |||| ||||| |||| ||| ||||||||||||||||    
T  12409498 atattgtattattttcacttgagtcgttgtaattca 12409533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 303 - 472
Target Start/End: Original strand, 26297758 - 26297925
Alignment:
Q  303 agttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattc-actttatcctaaatcatgcaactctataggtgt 401  Q
    ||||| ||||||||| || |||||||| ||| | |  ||||||||| | ||||||||||||||||| | |||||||||||||||||||||  |||  |||    
T  26297758 agttagaggagttgttaatggtttgagaaactttttatattgttttcattcgagtcgttgtaattcaattttatcctaaatcatgcaacttcata--tgt 26297855  T
Q  402 tttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
     |||||| | || |||| | ||||||||||||||| | || |||||||||| |||||||||  ||||||||    
T  26297856 gttgagtctatt-tagtgataaatcatgtaaatcggcaaaacaagacatcaagtgaaggatcgaggatatg 26297925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 436
Target Start/End: Original strand, 18474200 - 18474312
Alignment:
Q  323 gtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcact-ttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcag 421  Q
    |||||||||||  || |||||||||  | |||| || |||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||  ||| ||    
T  18474200 gtttgaggaactgattgtattgtttc-attcgattcattgtaattcactgttatcctaaatcatgcaactccataggtgttttgagtctttt-cagtgag 18474297  T
Q  422 aaatcatgtaaatcg 436  Q
    |||||||||||||||    
T  18474298 aaatcatgtaaatcg 18474312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 302 - 411
Target Start/End: Complemental strand, 23007172 - 23007062
Alignment:
Q  302 gagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtg 400  Q
    |||||| | |||||||||| | ||||||||| |||| ||||||||||  |||||||| || ||| ||||||| |||||||||||| |||||| |||| ||    
T  23007172 gagttagatgagttgtcaatgatttgaggaatatattgtattgttttccctcgagtcattataaatcacttttatcctaaatcatacaactccatagatg 23007073  T
Q  401 ttttgagtgtt 411  Q
    |||||||||||    
T  23007072 ttttgagtgtt 23007062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 371 - 472
Target Start/End: Complemental strand, 26387881 - 26387781
Alignment:
Q  371 tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggata 470  Q
    |||||||||||||||||||||| |||| |||||||||| |||| || | ||||||||||||||||  | || |||||||||| ||||||||| || ||||    
T  26387881 tttatcctaaatcatgcaactccatagatgttttgagtctttt-taatgagaaatcatgtaaatcagctaaacaagacatcaagtgaaggatcaaagata 26387783  T
Q  471 tg 472  Q
    ||    
T  26387782 tg 26387781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 398 - 472
Target Start/End: Original strand, 16970566 - 16970640
Alignment:
Q  398 gtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    |||||| ||||||||| ||||  | |||||||||||||||| ||||||||||||| ||||||||| |||||||||    
T  16970566 gtgtttagagtgttttgtagtagggaatcatgtaaatcgacaaatcaagacatcatgtgaaggatcaaggatatg 16970640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 384
Target Start/End: Complemental strand, 19264004 - 19263922
Alignment:
Q  303 agttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatca 384  Q
    ||||| |||||||||||| |||||||||| |||||  ||||||| | ||| ||||||||||||||||| ||||||||||||||    
T  19264004 agttagaggagttgtcaatggtttgaggatcatattatattgttgtcactagagtcgttgtaattcacttttatcctaaatca 19263922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 413
Target Start/End: Complemental strand, 19546075 - 19545978
Alignment:
Q  317 tcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcact-ttatcctaaatcatgcaactctataggtgttttgagtgtttt 413  Q
    |||| |||||||||||| ||| |||||||||||| | ||||| |||||||||||| |||||||| |||||| || | ||||| |||||||||| ||||    
T  19546075 tcaatggtttgaggaacttattgtattgtttttatttgagtcattgtaattcactattatcctatatcatgtaattttatagttgttttgagtttttt 19545978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 468
Target Start/End: Complemental strand, 26797284 - 26797189
Alignment:
Q  371 tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaagga 468  Q
    |||||||||||||||||||||  |||||||||| |||| |||| |||  ||| ||||||||||||||| || |||||||||| ||||||||| |||||    
T  26797284 tttatcctaaatcatgcaacttcataggtgttt-gagtctttt-tagagagatatcatgtaaatcgacaaaacaagacatcaagtgaaggatcaagga 26797189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 310 - 385
Target Start/End: Original strand, 18065832 - 18065905
Alignment:
Q  310 ggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcat 385  Q
    ||||||||||| |||||||| ||||||| |||||||||| |||||||||   ||||||||| |||||||||||||||    
T  18065832 ggagttgtcaatggtttgagaaacatattgtattgttttcactcgagtc---gtaattcacttttatcctaaatcat 18065905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 418
Target Start/End: Complemental strand, 4780824 - 4780677
Alignment:
Q  271 ttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac 370  Q
    |||||||||||||| || |||||| |||| |||  || ||||| | | || |||||||||| ||||| |||||||||| ||| || || |||||||||||    
T  4780824 ttttctttgtatttgaatacaaatgagataagatatagaggagctcttaatggtttgagga-catattgtattgttttcacttgaatcattgtaattcac 4780726  T
Q  371 t-ttatcctaaatcatgcaactctataggtgttttgagtgttttatagt 418  Q
    | |||||||| ||||| |||||  |||| | ||||||||| ||| ||||    
T  4780725 tcttatcctacatcattcaacttcatagatattttgagtggtttgtagt 4780677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 472
Target Start/End: Complemental strand, 23908354 - 23908207
Alignment:
Q  325 ttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaa 423  Q
    ||||||||||| | |||||||||| | |||| |||||||||||| | ||||||| |||| |||||| |  ||||||| |||||||  ||| |||  ||||    
T  23908354 ttgaggaacattttgtattgttttcattcgattcgttgtaattcccttttatccaaaataatgcaatttcataggtgctttgagt-ctttctagggagaa 23908256  T
Q  424 atcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    |||||||||| || | || ||||||||| | |||||||| ||| |||||    
T  23908255 atcatgtaaagcggcaaagcaagacatctcatgaaggatcaagaatatg 23908207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 391
Target Start/End: Complemental strand, 4775794 - 4775724
Alignment:
Q  322 ggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcact-ttatcctaaatcatgcaact 391  Q
    |||||| |||||||||  ||||||||| ||  |||||||||||||||||| |||||||| |||||||||||    
T  4775794 ggtttgtggaacatattttattgttttcacctgagtcgttgtaattcactcttatcctagatcatgcaact 4775724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 453
Target Start/End: Complemental strand, 5632585 - 5632497
Alignment:
Q  357 tcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcac 453  Q
    ||||||||||||||||| ||| | ||||||||||||| ||||||||||||         |||| ||||||||||||||||||| || |||||||||||    
T  5632585 tcgttgtaattcacttttatcttgaatcatgcaactccataggtgttttg---------tagtgagaaatcatgtaaatcgacaaaccaagacatcac 5632497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 434
Target Start/End: Complemental strand, 30493334 - 30493238
Alignment:
Q  339 gtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcag-aaatcatgtaaat 434  Q
    |||||||||| | ||||||||||||| || | ||| |||||||||||||||| || || |||||||||||| |||| |||| || |||||||||||||    
T  30493334 gtattgttttcattcgagtcgttgtagtttagttttatcctaaatcatgcaaatccatgggtgttttgagtctttt-tagtgagaaaatcatgtaaat 30493238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 317
Target Start/End: Original strand, 17637035 - 17637126
Alignment:
Q  226 tgatgacagagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgt 317  Q
    ||||||| |||||||| ||| || ||||  |||||||| || |||||||||||||| || || ||||||||||| ||| | | |||||||||    
T  17637035 tgatgacggagcatcatatgacatttttggctatgtttatattacttttctttgtaattaaagacaaataagataagaataagaggagttgt 17637126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 467
Target Start/End: Original strand, 33577754 - 33577907
Alignment:
Q  314 ttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcactt-tatcctaaatcatgcaactctataggtgttttgagtgttt 412  Q
    ||||||| ||||||| |||| | | |||||||||||| | || || |||||||||| || ||||||||||||||||||   || |||| ||||||| |||    
T  33577754 ttgtcaatggtttgaagaacgttttgtattgtttttatttgattcattgtaattcatttatatcctaaatcatgcaacctcattggtggtttgagtcttt 33577853  T
Q  413 tatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaagg 467  Q
    | ||   | ||| ||||||||||| | ||  |||||||||| |||||||| ||||    
T  33577854 t-taaagaaaaaacatgtaaatcggcaaagtaagacatcacatgaaggatcaagg 33577907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 329
Target Start/End: Original strand, 10303427 - 10303495
Alignment:
Q  261 tttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgag 329  Q
    |||||| ||||||||| |  |||| ||| ||||||||||| || ||| |||||||||||| ||||||||    
T  10303427 tttttagtacttttctctacatttgaaatcaaataagatgtgaattagaggagttgtcaatggtttgag 10303495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 6e-66; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 226 - 472
Target Start/End: Original strand, 7142030 - 7142277
Alignment:
Q  226 tgatgacagagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtt 325  Q
    |||||||||||||||| ||| || ||||  |||||||||||||| ||||||||| |||| || ||||||||| ||||||  ||| |||||||||| ||||    
T  7142030 tgatgacagagcatcatatgacatttttggctatgtttttaatagttttctttgcatttaaagacaaataagttgagagagatatgagttgtcaatggtt 7142129  T
Q  326 tgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaa 424  Q
    | ||||||||||  ||||| ||| ||||||||||||||||||||| ||||||| | |||||||||||| ||||||||||| |||||||| |||| |||||    
T  7142130 taaggaacatattttattgctttcactcgagtcgttgtaattcacttttatccaagatcatgcaactccataggtgttttaagtgttttgtagtgagaaa 7142229  T
Q  425 tcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    |||||||||||||| ||||||||||||||||||||||| || ||||||    
T  7142230 tcatgtaaatcgacaaatcaagacatcacgtgaaggatcaaagatatg 7142277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 250 - 472
Target Start/End: Original strand, 23124857 - 23125079
Alignment:
Q  250 tttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgttttt 349  Q
    ||||||||||||||||| |||||| ||||  |||| || ||||||||||||||| ||| ||||||||| |  ||| |||||||||||| ||||||||||     
T  23124857 tttttactatgtttttagtacttt-ctttacatttgaagacaaataagatgagatttagaggagttgttagtggtctgaggaacatattgtattgttttc 23124955  T
Q  350 actcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagac 448  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||    
T  23124956 actcgagtcgttgtaattcacatttatccaaaatcatacaactctataggtgttttgagtgttttctagtgagaaatcatgtaaatcgaccaatcaagac 23125055  T
Q  449 atcacgtgaaggattaaggatatg 472  Q
    |||| |||||||||  ||||||||    
T  23125056 atcatgtgaaggatcgaggatatg 23125079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 256 - 472
Target Start/End: Original strand, 29544481 - 29544698
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    ||||||||||| || ||||||||| |||| || ||||||||||||||||||| ||||||||||||  ||||||||||||||| |||||||||| ||||||    
T  29544481 ctatgtttttattaattttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatagtttgaggaacatattgtattgttttcactcga 29544580  T
Q  356 gtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacg 454  Q
    ||||||||||||||| ||| ||||||||  ||||| || ||| |||||||||||||||| |||| || |||||||||||||||| || |||||||||||     
T  29544581 gtcgttgtaattcacttttctcctaaattgtgcaattccataagtgttttgagtgttttttagtaaggaatcatgtaaatcgacaaaccaagacatcaca 29544680  T
Q  455 tgaaggattaaggatatg 472  Q
    |||||||| || ||||||    
T  29544681 tgaaggatcaaagatatg 29544698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 259 - 469
Target Start/End: Complemental strand, 20470960 - 20470749
Alignment:
Q  259 tgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtc 358  Q
    |||||||| ||||||| ||| ||| | || ||||||||||||| | ||| |||||||||||| ||||||||||||||||  ||||||||| |||  ||||    
T  20470960 tgtttttagtacttttatttatatgtgaagacaaataagatgataattagaggagttgtcaatggtttgaggaacatattatattgttttcacttaagtc 20470861  T
Q  359 gttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtga 457  Q
    ||||||||||||||| | ||||||||||||| ||  |||| |||||||||||||||||||| | ||| ||||||||||||| |||||||||||| | |||    
T  20470860 gttgtaattcactttcagcctaaatcatgcatctgcatagctgttttgagtgttttatagtgataaagcatgtaaatcgacaaatcaagacatcgcatga 20470761  T
Q  458 aggattaaggat 469  Q
    | ||| ||||||    
T  20470760 acgatcaaggat 20470749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 289 - 470
Target Start/End: Complemental strand, 1255333 - 1255151
Alignment:
Q  289 acaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgc 387  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||| | || |||||||||| ||||||||| ||||||||||  |||||||||||||||||    
T  1255333 acaaataagttgagagttagaggagttgtcaatggtttgaggaataaattgtattgttttcactcgagtcattgtaattcatttttatcctaaatcatgc 1255234  T
Q  388 aactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggata 470  Q
    ||||  |||||||||||||||||||| || | | |||| || |||||| || |||||| ||||||| |||||||| |||||||    
T  1255233 aacttcataggtgttttgagtgttttgtaatgaaaaattatttaaatcaacaaatcaaaacatcacatgaaggatcaaggata 1255151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 271 - 469
Target Start/End: Complemental strand, 22067944 - 22067741
Alignment:
Q  271 ttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattc-a 369  Q
    |||| |||| |||| || ||||||||||||||||||| |||||||||||| |||||||||||||||  |||||||||| ||||||||| ||||||||| |    
T  22067944 ttttatttgcatttgaagacaaataagatgagagttaaaggagttgtcaatggtttgaggaacataatgtattgttttcactcgagtcattgtaattcaa 22067845  T
Q  370 ctttatcctaaatcatgcaactctatagg--tgttttgagtgttttatagtcagaaatc--atgtaaatcgacgaatcaagacatcacgtgaaggattaa 465  Q
     ||||||||| |||||||||||| |||||  | ||||||||||||| |||| || ||||  |||||||||  | ||||||||||||| ||||||||| ||    
T  22067844 ttttatcctagatcatgcaactccataggtattttttgagtgttttgtagtgaggaatcatatgtaaatcatcaaatcaagacatcatgtgaaggatcaa 22067745  T
Q  466 ggat 469  Q
    ||||    
T  22067744 ggat 22067741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 257 - 471
Target Start/End: Original strand, 7815285 - 7815501
Alignment:
Q  257 tatgtttttaatacttttct-ttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    |||||||||| ||||||| | ||| |||| || | ||||||||||||||||| |||| ||||||| ||||| || ||||||| ||||| |||| |||||     
T  7815285 tatgtttttagtacttttttgttgcatttgaagataaataagatgagagttaaaggacttgtcaatggtttaagaaacatattgtatttttttcactcgg 7815384  T
Q  356 gtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacg 454  Q
    || ||||||||||| ||| || |||||||||||||||  |||||||||||||||||||| |||| |  ||||||||||||| || ||| ||||||||| |    
T  7815385 gtggttgtaattcagttttattctaaatcatgcaacttcataggtgttttgagtgttttgtagtgatgaatcatgtaaatcaacaaataaagacatcatg 7815484  T
Q  455 tgaaggattaaggatat 471  Q
    |||||||| ||||||||    
T  7815485 tgaaggatcaaggatat 7815501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 331 - 472
Target Start/End: Complemental strand, 9761493 - 9761351
Alignment:
Q  331 aacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatg 429  Q
    ||||||| ||||| |||| |||| ||||||||||||||||||| |||||| || |||||| || ||||||||||||||| ||| ||||| | ||||||||    
T  9761493 aacatattgtatttttttcactctagtcgttgtaattcacttttatcctagattatgcaattccataggtgttttgagtttttaatagtgataaatcatg 9761394  T
Q  430 taaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||||||||| ||||||||||||||||||||||| |||||||||    
T  9761393 taaatcgacaaatcaagacatcacgtgaaggatcaaggatatg 9761351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 331 - 472
Target Start/End: Complemental strand, 9801952 - 9801810
Alignment:
Q  331 aacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatg 429  Q
    ||||||| ||||| |||| |||| ||||||||||||||||||| |||||| || |||||| || ||||||||||||||| ||| ||||| | ||||||||    
T  9801952 aacatattgtatttttttcactctagtcgttgtaattcacttttatcctagattatgcaattccataggtgttttgagtttttaatagtgataaatcatg 9801853  T
Q  430 taaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||||||||| |||||| |||||| ||||||||| |||||||||    
T  9801852 taaatcgacaaatcaaaacatcatgtgaaggatcaaggatatg 9801810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 225 - 469
Target Start/End: Original strand, 21471728 - 21471972
Alignment:
Q  225 gtgatgacagagcatcacatgccactttttactatgtttttaatactttt-ctttgtatttcaaaacaaataagatgagagttataggagttgtcaacgg 323  Q
    ||||||||||||||||| |||||| ||||   |||||||||| ||||||| | ||| |||| || ||||||||||||| | ||| |||| ||||||| |     
T  21471728 gtgatgacagagcatcatatgcca-ttttggttatgtttttagtactttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatga 21471826  T
Q  324 tttgaggaacatatcgtattgtttttactcgagtcgttgtaa-ttcactttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcaga 422  Q
    ||| | ||||||||  ||||||||| ||||||||  |||||| ||   ||||||||| ||||||||| || |||||||||||||||||||| |||| ||     
T  21471827 ttttaagaacatattatattgttttcactcgagt-tttgtaattttgttttatcctagatcatgcaattccataggtgttttgagtgttttgtagtgagg 21471925  T
Q  423 aatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggat 469  Q
    ||||||||||||| |  ||||| |||||||||||| |||| ||||||    
T  21471926 aatcatgtaaatcaataaatcatgacatcacgtgagggatcaaggat 21471972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 309 - 472
Target Start/End: Original strand, 30405611 - 30405772
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcactttatcctaaatcatgcaactctataggtgttttgagt 408  Q
    ||||||||| || |||||||||||| | | |||||||||||| | || || |||||||||||||||||||||| |||||||||| |||||||||||||      
T  30405611 aggagttgttaatggtttgaggaactttttgtattgtttttatttgactcattgtaattcactttatcctaaaccatgcaactccataggtgttttga-- 30405708  T
Q  409 gttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||||| |||| ||||||||||||||||| | ||  |||| |||| |||||||||  ||||||||    
T  30405709 gttttttagtgagaaatcatgtaaatcggcaaaataagaaatcatgtgaaggatcgaggatatg 30405772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 310 - 472
Target Start/End: Complemental strand, 20461746 - 20461584
Alignment:
Q  310 ggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagt 408  Q
    ||||||||||| |||||||||||||  | |||||||||| | |||||||||||||| ||| ||| ||||||||||| |||||   |||||||||| ||||    
T  20461746 ggagttgtcaatggtttgaggaacaatttgtattgttttcattcgagtcgttgtaactcaatttcatcctaaatcacgcaacatgataggtgtttcgagt 20461647  T
Q  409 gttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
     |||| |||| ||||||||||||||||| | ||  ||||||||| ||||||||| |||||||||    
T  20461646 ctttt-tagtgagaaatcatgtaaatcggcaaaataagacatcaagtgaaggatcaaggatatg 20461584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 312 - 410
Target Start/End: Complemental strand, 21545896 - 21545797
Alignment:
Q  312 agttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgt 410  Q
    ||||||||| |||||||||||||||| |||||||||| |||||||||||||||| |||| |||||||||||||||||||||  |||||| |||| |||||    
T  21545896 agttgtcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaactcacttttatcctaaatcatgcaactacataggttttttaagtgt 21545797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 309 - 471
Target Start/End: Complemental strand, 7372666 - 7372504
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atc-ctaaatcatgcaactctataggtgttttga 406  Q
    |||||||||||  ||||||| |||| | | |||||||||| | |||||||||||||||||| ||| ||| | |||||||||||||  ||||||||||| |    
T  7372666 aggagttgtcattggtttgatgaactttttgtattgttttcattcgagtcgttgtaattcaattttatcacgaaatcatgcaacttcataggtgttttca 7372567  T
Q  407 gtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatat 471  Q
    ||||||| |||| ||||||| ||||||||  | |||||||| ||||  |||||||| ||||||||    
T  7372566 gtgttttttagtgagaaatcttgtaaatcagcaaatcaagatatca--tgaaggatcaaggatat 7372504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 309 - 472
Target Start/End: Complemental strand, 3269065 - 3268902
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgag 407  Q
    |||||||||||  |||||||| ||||| | ||||||||||   | |||| ||||||||||||||| ||||||||||||||||||   || ||||||| ||    
T  3269065 aggagttgtcattggtttgagtaacattttgtattgttttcgtttgagttgttgtaattcacttttatcctaaatcatgcaacttcgtatgtgttttaag 3268966  T
Q  408 tgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    | |||| |||| ||||||||||||||||| | || ||||| ||||| |||||||| ||| |||||    
T  3268965 tctttt-tagtgagaaatcatgtaaatcggcaaaacaagatatcacatgaaggatcaagtatatg 3268902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 405
Target Start/End: Original strand, 315182 - 315297
Alignment:
Q  291 aaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgcaa 389  Q
    ||||||||||||||||| |||||||||||| ||||||| ||| |||| ||||| || | ||||||||  |||| |||||  ||||||||| |||||||||    
T  315182 aaataagatgagagttagaggagttgtcaatggtttgaagaatatattgtattattgtcactcgagttattgttattcagttttatcctagatcatgcaa 315281  T
Q  390 ctctataggtgttttg 405  Q
    ||| ||||||||||||    
T  315282 ctccataggtgttttg 315297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 469
Target Start/End: Original strand, 10292755 - 10292930
Alignment:
Q  295 aagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactct 393  Q
    ||||||||||||| || ||||||  | | ||| || || |||| ||||| |||| | |||||||||||||||||| ||| |||| | |||||||||| |     
T  10292755 aagatgagagttagagcagttgttgaggatttaagcaaaatattgtatttttttcaatcgagtcgttgtaattcagttttatccaagatcatgcaacacc 10292854  T
Q  394 ataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggat 469  Q
    |||||||||| || | |||| |||| || |||||||||||||  | ||||||||||||| ||||||||| ||||||    
T  10292855 ataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggat 10292930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 355 - 472
Target Start/End: Complemental strand, 4977874 - 4977756
Alignment:
Q  355 agtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcac 453  Q
    ||||||||||||||||||| ||||||||| ||||||||  ||||  ||| |||| | |||||||| |||||||||||||||  || ||||||||||||||    
T  4977874 agtcgttgtaattcacttttatcctaaattatgcaacttcatagaggttgtgagcggtttatagtgagaaatcatgtaaatatacaaatcaagacatcac 4977775  T
Q  454 gtgaaggattaaggatatg 472  Q
     ||||||||  ||||||||    
T  4977774 atgaaggatcgaggatatg 4977756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 309 - 472
Target Start/End: Original strand, 1074467 - 1074631
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgag 407  Q
    |||||||||||| ||||||||||||  || ||||| |||| | |||| || ||||||||  |||| ||||||||| || |||||| ||| |||||||| |    
T  1074467 aggagttgtcaatggtttgaggaaccaattgtattattttcattcgattcattgtaatttgcttttatcctaaattatacaactccataagtgttttgtg 1074566  T
Q  408 tgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    | |||| |||| ||||||||||||||| |   || |||||||||| || |||||| |||||||||    
T  1074567 tcttttttagtgagaaatcatgtaaattggaaaagcaagacatcaagtaaaggatcaaggatatg 1074631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 456
Target Start/End: Complemental strand, 24597058 - 24596956
Alignment:
Q  354 gagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatca 452  Q
    |||||||||||||||| ||| |||||||||||||||||||  |||||||||| ||| |||| |||| ||||||| ||||||||| | || ||||||||||    
T  24597058 gagtcgttgtaattcaattttatcctaaatcatgcaactccgtaggtgttttaagtctttt-tagtgagaaatcgtgtaaatcggcaaaacaagacatca 24596960  T
Q  453 cgtg 456  Q
    ||||    
T  24596959 cgtg 24596956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 472
Target Start/End: Complemental strand, 5312855 - 5312722
Alignment:
Q  339 gtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcga 437  Q
    |||||||||| | | |||||||||||||||||||| ||| || | |||||||||| ||||||||||||||| |||| |||| | |||||||||||||||     
T  5312855 gtattgttttcatttgagtcgttgtaattcacttttatcttatagcatgcaactccataggtgttttgagtctttt-tagtgataaatcatgtaaatcgg 5312757  T
Q  438 cgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    | ||   | |||||| ||||||||| |||||||||    
T  5312756 caaaaataaacatcaagtgaaggatcaaggatatg 5312722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 371 - 472
Target Start/End: Complemental strand, 8309068 - 8308968
Alignment:
Q  371 tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggata 470  Q
    |||||||||||||||||||||| |||  |||||||||| |||| |||| ||||||||||||||||  | || ||||||||||||||||| || |||| ||    
T  8309068 tttatcctaaatcatgcaactccatacatgttttgagtctttt-tagtaagaaatcatgtaaatcagcaaaacaagacatcacgtgaagaatcaaggtta 8308970  T
Q  471 tg 472  Q
    ||    
T  8308969 tg 8308968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 256 - 358
Target Start/End: Original strand, 20446200 - 20446303
Alignment:
Q  256 ctatgtttttaatactttt-ctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcg 354  Q
    ||||||||||||||||||| ||||| |||| || |||| |||||||||| ||| |||||||||||| ||||| || ||||||| || ||||||| ||| |    
T  20446200 ctatgtttttaatactttttctttgcatttgaagacaattaagatgagaattagaggagttgtcaatggtttcagaaacatattgttttgttttcacttg 20446299  T
Q  355 agtc 358  Q
    ||||    
T  20446300 agtc 20446303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 408
Target Start/End: Complemental strand, 2632574 - 2632436
Alignment:
Q  271 ttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattca- 369  Q
    ||||||||| |||| || || ||||  |||||||||| |||||||||  | | ||| |||||||||| ||||| |||| | |||| |||||||||||||     
T  2632574 ttttctttgcatttaaagactaatagtatgagagttagaggagttgttgatgattttaggaacatattgtattattttcaatcgaatcgttgtaattcag 2632475  T
Q  370 ctttatcctaaatcatgcaactctataggtgttttgagt 408  Q
     ||||||| | |||||||||||  |||||||||||||||    
T  2632474 ttttatccaagatcatgcaacttcataggtgttttgagt 2632436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 472
Target Start/End: Original strand, 9755829 - 9755972
Alignment:
Q  323 gtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcactttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcaga 422  Q
    ||||||||||| | | ||||| |||| |||||||||||||||||| |||||       ||||||||  |  ||||||||||| || ||||| |||| |||    
T  9755829 gtttgaggaacgttttgtatttttttcactcgagtcgttgtaatttactttt------atcatgcattttcataggtgtttttagcgttttctagtgaga 9755922  T
Q  423 aatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||||||| |||||||| |||| |||||||| ||||||||| || ||||||    
T  9755923 aatcatgcaaatcgacaaatctagacatcatgtgaaggatcaacgatatg 9755972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 402
Target Start/End: Original strand, 4828806 - 4828900
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgtt 402  Q
    ||||||| |||| |||||||||||| | | ||||| |||||| |||| || |||||||| || |||||||||||||||||||||| |||| ||||    
T  4828806 aggagttttcaatggtttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgcaactccatagttgtt 4828900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 472
Target Start/End: Original strand, 9800625 - 9800768
Alignment:
Q  323 gtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcactttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcaga 422  Q
    ||||||||||| | | ||||| |||| |||||||||||||||||| |||||       ||||||||  |  ||||||||||| || ||||| |||| |||    
T  9800625 gtttgaggaacgttttgtatttttttcactcgagtcgttgtaatttactttt------atcatgcattttcataggtgtttttagcgttttctagtgaga 9800718  T
Q  423 aatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||||||| |||||||  |||| |||||||| ||||||||| || ||||||    
T  9800719 aatcatgcaaatcgagaaatctagacatcatgtgaaggatcaatgatatg 9800768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 451
Target Start/End: Complemental strand, 2353326 - 2353199
Alignment:
Q  324 tttgaggaacatatcgtattgtttttactcgagtcgttgtaattcactttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcaga- 422  Q
    |||| ||||||| | ||||||| || | ||||| |||||||||||||   ||||||||||||||||||| |||||||||||| |  |||| |||| |||     
T  2353326 tttggggaacattttgtattgtattcattcgagacgttgtaattcac---atcctaaatcatgcaactccataggtgttttgggcctttt-tagtgagaa 2353231  T
Q  423 ---aatcatgtaaatcgacgaatcaagacatc 451  Q
       |||||||||||||||| || |||||||||    
T  2353230 attaatcatgtaaatcgacaaagcaagacatc 2353199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 435
Target Start/End: Complemental strand, 7361733 - 7361605
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atc-ctaaatcatgcaactctataggtgttttga 406  Q
    |||||||||||  |||| || |||| | | ||| |||||| | ||||||| |||||| ||||||| ||| ||||||||||||||||  ||| ||||||||    
T  7361733 aggagttgtcattggttcgatgaactttttgtaatgttttcattcgagtcattgtaactcacttttatcactaaatcatgcaactccgtagatgttttga 7361634  T
Q  407 gtgttttatagtcagaaatcatgtaaatc 435  Q
    ||||||| |||| | |||| |||||||||    
T  7361633 gtgttttgtagtgaaaaattatgtaaatc 7361605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 472
Target Start/End: Original strand, 9070515 - 9070567
Alignment:
Q  420 agaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||||||||||||||| ||||||| |||||||| |||||||||| |||||||||    
T  9070515 agaaatcatgtaaattgacgaataaagacatcgcgtgaaggatcaaggatatg 9070567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 391
Target Start/End: Original strand, 46054660 - 46054796
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    |||||||||||||  |||| ||||||||| ||  |||||||||||  | ||| |||||||||||  | |||||||||||  |  ||||||||| | || |    
T  46054660 ctatgtttttaattattttttttgtatttgaaggcaaataagatgtcatttaaaggagttgtcattgatttgaggaacaatttatattgttttaattcaa 46054759  T
Q  356 gtcgttgtaattcac-tttatcctaaatcatgcaact 391  Q
    |||||||||||| || |||||  ||||||||||||||    
T  46054760 gtcgttgtaatttacttttataataaatcatgcaact 46054796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 436
Target Start/End: Complemental strand, 12358816 - 12358734
Alignment:
Q  354 gagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcg 436  Q
    |||||||||||||||| ||| |||||||||||| |||||  ||||||||||||||| |||| |||| |||||| || |||||||    
T  12358816 gagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcg 12358734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 472
Target Start/End: Original strand, 7494637 - 7494875
Alignment:
Q  220 tggtagtgatgacagagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtca 319  Q
    |||| |||||||  ||||||||||||  | ||||  ||||  ||||| |||||||||||| | || || ||||| | | |||||| || |  |||||| |    
T  7494637 tggttgtgatgaatgagcatcacatgatatttttggctattcttttagtacttttctttgcacttgaagacaaacaggttgagagataaaatagttgtta 7494736  T
Q  320 acggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagt 418  Q
    | ||||||||||||||||     | |||| |||| ||||||||||||||||||| |||||| ||| ||||| || |||||          ||||| ||||    
T  7494737 atggtttgaggaacatat-----tcttttcactcaagtcgttgtaattcacttttatcctagatcttgcaattccatagg----------gttttgtagt 7494821  T
Q  419 cagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
      |||||||||||||| ||  |||||||||||||| |||||||| |||||||||    
T  7494822 gggaaatcatgtaaattgaaaaatcaagacatcacatgaaggatcaaggatatg 7494875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 436
Target Start/End: Complemental strand, 17881598 - 17881471
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgag 407  Q
    |||||||||||| | ||| |||||| | | ||||| |||| | |||| || |||||||| | ||| ||| ||||||||||||||  |||||| |||||||    
T  17881598 aggagttgtcaatgattttaggaactttttgtattattttcattcgaatcattgtaatttaattttatcataaatcatgcaacttaataggtattttgag 17881499  T
Q  408 tgttttatagtcagaaatcatgtaaatcg 436  Q
    | |||| |||| |||| ||||||||||||    
T  17881498 tctttt-tagtgagaagtcatgtaaatcg 17881471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 469
Target Start/End: Complemental strand, 2630482 - 2630415
Alignment:
Q  402 tttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggat 469  Q
    |||||||||||| |||| || |||||||||||||  | ||||||||||||| |||||| || ||||||    
T  2630482 tttgagtgttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaagaatcaaggat 2630415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 472
Target Start/End: Complemental strand, 7778024 - 7777975
Alignment:
Q  423 aatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||||||||||||| || || |||||||||||||||||||| || ||||||    
T  7778024 aatcatgtaaatcaacaaagcaagacatcacgtgaaggatcaacgatatg 7777975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 18496583 - 18496679
Alignment:
Q  312 agttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgag 407  Q
    |||||||||  |||||||||||   | | |||||||| | |||| || |||||||||| ||| |||||||||||||| |||  ||||||||||||||    
T  18496583 agttgtcaattgtttgaggaactatttgaattgttttcattcgaatcattgtaattcatttttatcctaaatcatgcgacttcataggtgttttgag 18496679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 225 - 474
Target Start/End: Original strand, 24841684 - 24841934
Alignment:
Q  225 gtgatgacagagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggt 324  Q
    ||||||||||||||||| ||| || ||||| ||||||||||| |||| ||||||| |||| || ||||||||| | |||| || ||||||| |||| |||    
T  24841684 gtgatgacagagcatcatatgacattttttgctatgtttttagtactattctttgcatttgaagacaaataagtttagagatagaggagttttcaatggt 24841783  T
Q  325 ttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaa 423  Q
    ||||||||||||| |||||||||| |||||||||||||||| |||| ||||||||| |||||| ||||| ||||||||||| |||||||| |||| ||||    
T  24841784 ttgaggaacatattgtattgttttcactcgagtcgttgtaagtcacttttatcctagatcatggaactccataggtgtttttagtgttttgtagtgagaa 24841883  T
Q  424 atcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatgtg 474  Q
    ||||||||||| ||  |||||||||| |||||||||||| |||||||||||    
T  24841884 atcatgtaaattgaaaaatcaagacaacacgtgaaggatcaaggatatgtg 24841934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 256 - 472
Target Start/End: Original strand, 18222455 - 18222672
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    |||| |||||| || |||| ||| ||||| || ||||||||||||||||||| | |||||||||| |||||||| ||||||| |||||||||| ||||||    
T  18222455 ctatatttttagtatttttatttctatttgaagacaaataagatgagagttagatgagttgtcaatggtttgagaaacatattgtattgttttaactcga 18222554  T
Q  356 gtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacg 454  Q
    ||| ||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||| || ||| ||||||||| || ||||||| || ||||    
T  18222555 gtcattgtaattcacttttatcctaaatcatgcaaatccataggtgttttgagtgttttatagtaagtaattatgtaaatcaacaaatcaaggcaacacg 18222654  T
Q  455 tgaaggattaaggatatg 472  Q
    |||| ||| |||||||||    
T  18222655 tgaaagatcaaggatatg 18222672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 291 - 461
Target Start/End: Original strand, 16634043 - 16634214
Alignment:
Q  291 aaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaa 389  Q
    ||||||||||||||||  | |||||||||| |||||||| ||||||| |||||||||| |||||||||||||||||||||||| || |||||||||||||    
T  16634043 aaataagatgagagttggatgagttgtcaatggtttgagaaacatattgtattgttttcactcgagtcgttgtaattcacttttattctaaatcatgcaa 16634142  T
Q  390 ctctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaagga 461  Q
    ||||||||||||||||| ||||||  ||| ||||||||| ||||||||| ||||||||||||||||||||||    
T  16634143 ctctataggtgttttgaatgttttgcagtgagaaatcatataaatcgacaaatcaagacatcacgtgaagga 16634214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 226 - 472
Target Start/End: Complemental strand, 25594875 - 25594628
Alignment:
Q  226 tgatgacagagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtt 325  Q
    |||||||||||||||| ||   | ||||  ||||||||||| ||||||| |||| |||| || ||||||||||||||||||| |||| || |||| ||||    
T  25594875 tgatgacagagcatcatatattatttttggctatgtttttagtacttttatttgcatttgaagacaaataagatgagagttagaggatttctcaatggtt 25594776  T
Q  326 tgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaa 424  Q
    |||||||||||| |||||||||| ||| |||| |||||| |||| ||| ||||||||| ||||||||  ||| ||||||||||||||||||||| |||||    
T  25594775 tgaggaacatattgtattgttttcactggagttgttgtatttcatttttatcctaaatgatgcaacttcatatgtgttttgagtgttttatagtgagaaa 25594676  T
Q  425 tcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    |||||||||||||  ||| |||||||||| |||| ||| |||||||||    
T  25594675 tcatgtaaatcgaaaaattaagacatcacatgaacgatcaaggatatg 25594628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 234 - 456
Target Start/End: Original strand, 17027467 - 17027690
Alignment:
Q  234 gagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaac 333  Q
    |||||||| ||| || ||||  ||||||||||| |||||||||||| |||| || |||| |||||||||||||| ||| || ||||| ||||||||||||    
T  17027467 gagcatcatatgacatttttggctatgtttttagtacttttctttgcatttaaagacaattaagatgagagttagaggcgtggtcaagggtttgaggaac 17027566  T
Q  334 atatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaa 432  Q
    |||| | |||||||| ||| ||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| ||||||    | |||||||||||||    
T  17027567 atattgaattgttttcacttgagtcgttgtaattcacttttatcctaaatcacgcaactccataggtgttttgactgttttgccatgagaaatcatgtaa 17027666  T
Q  433 atcgacgaatcaagacatcacgtg 456  Q
    |||||  |||||||||||||||||    
T  17027667 atcgaaaaatcaagacatcacgtg 17027690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 250 - 472
Target Start/End: Complemental strand, 17382194 - 17381980
Alignment:
Q  250 tttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgttttt 349  Q
    ||||| |||||| |||| ||||||| |||| |||| || ||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||     
T  17382194 tttttgctatgtgtttagtacttttttttgcatttgaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtattgttttc 17382095  T
Q  350 actcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagac 448  Q
    |||| | |||||||| ||||| |||||||||||||||||||||         || |||||||||| |||| ||||||||||||||||| | |||||||||    
T  17382094 actcaaatcgttgtatttcacttttatcctaaatcatgcaact---------ttatgagtgttttgtagtgagaaatcatgtaaatcgtcaaatcaagac 17382004  T
Q  449 atcacgtgaaggattaaggatatg 472  Q
    || | ||||||||| |||||||||    
T  17382003 ataatgtgaaggatcaaggatatg 17381980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 261 - 472
Target Start/End: Complemental strand, 11274479 - 11274266
Alignment:
Q  261 tttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaa-catatcgtattgtttttactcgagtcg 359  Q
    |||||| |||||||||||| |||| || || |||||||| |||| || |  ||||||||| |||||||| || ||||| |||||||||| ||| ||| ||    
T  11274479 tttttagtacttttctttgcatttaaagaccaataagataagagatagatcagttgtcaatggtttgagaaaacatattgtattgttttcacttgagccg 11274380  T
Q  360 ttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaa 458  Q
    ||| || |  |||| ||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| |||||| |||||||||||||| ||||    
T  11274379 ttgcaacttgcttttatcctaaatcatgcaactccataggtgttttgagtgttttgtagtaagaaatcatgtatatcgacaaatcaagacatcacatgaa 11274280  T
Q  459 ggattaaggatatg 472  Q
    |||| |||||||||    
T  11274279 ggatcaaggatatg 11274266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 257 - 470
Target Start/End: Original strand, 24517317 - 24517522
Alignment:
Q  257 tatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgag 356  Q
    |||||||||| | |||| ||||| |||| || ||||||||||||||| ||| |||||||||||| |||||||||||||||| |||||||||| || ||||    
T  24517317 tatgtttttagttctttgctttgcatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaacatattgtattgttttcacccgag 24517416  T
Q  357 tcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgt 455  Q
    |||||||||||||| |||||||| ||||||| ||||| ||||||||||||         || | |||||||||||||||||   |||||| |||||||||    
T  24517417 tcgttgtaattcacatttatccttaatcatgtaactccataggtgttttg---------taataagaaatcatgtaaatcggtaaatcaatacatcacgt 24517507  T
Q  456 gaaggattaaggata 470  Q
    ||||||| |||||||    
T  24517508 gaaggatcaaggata 24517522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 230 - 469
Target Start/End: Complemental strand, 12340191 - 12339953
Alignment:
Q  230 gacagagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgag 329  Q
    |||||||||||| ||| || ||||  ||||||||||| || ||||||||| |||| || ||||||||| ||||||||| |||||||||||| ||||||||    
T  12340191 gacagagcatcatatgaca-ttttggctatgtttttagta-ttttctttgcatttgaagacaaataaggtgagagttagaggagttgtcaatggtttgag 12340094  T
Q  330 gaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcat 428  Q
    ||||||||  |||| |||| ||| | ||| ||||||||||  ||||| ||| |||||||||||  ||| || ||||| ||||||| |||| || ||||||    
T  12340093 gaacatattatattattttcacttgtgtcattgtaattcagttttatactagatcatgcaacttcatatgtattttgcgtgttttgtagtaaggaatcat 12339994  T
Q  429 gtaaatcgacgaatcaagacatcacgtgaaggattaaggat 469  Q
     |||||| || ||||||||||||||||||||||| ||||||    
T  12339993 ataaatcaacaaatcaagacatcacgtgaaggatcaaggat 12339953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 226 - 435
Target Start/End: Original strand, 15205577 - 15205785
Alignment:
Q  226 tgatgacagagcatcacatgccactttttactatgtttttaatacttttc-tttgtatttcaaaacaaataagatgagagttataggagttgtcaacggt 324  Q
    |||||||||||||||| |||  | |||| |||||||||||| || ||||  |||| |||| || ||||||||||||||  ||| |||||||||||  |||    
T  15205577 tgatgacagagcatcatatgata-ttttgactatgtttttagtattttttatttgcatttaaatacaaataagatgag--ttaaaggagttgtcagtggt 15205673  T
Q  325 ttgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaa 423  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||  ||| ||||| ||||||||| || ||||||||||||||||||||  ||| || |    
T  15205674 ttgaggaacatattgtattgttttcactcgagtcgttgtaattcagttttctcctagatcatgcaattccataggtgttttgagtgttttgcagtgagga 15205773  T
Q  424 atcatgtaaatc 435  Q
    || |||||||||    
T  15205774 ataatgtaaatc 15205785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 226 - 472
Target Start/End: Original strand, 22229741 - 22229983
Alignment:
Q  226 tgatgacagagcatcacatgccactttttactatgtttttaa-tacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggt 324  Q
    |||||||||||||||| ||| || ||||  |||||||||| | |||||||||||| |||| || |||||||||||||||| || |||      ||| |||    
T  22229741 tgatgacagagcatcatatgtca-ttttggctatgttttttagtacttttctttgcatttgaagacaaataagatgagagatagaggc-----caatggt 22229834  T
Q  325 ttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaa 423  Q
    || |||||  ||| |||||||||| ||| |||||||||||||||| ||| |||||| | |||||||||| | | |||||||| || |||| |||| || |    
T  22229835 ttaaggaatgtattgtattgttttcacttgagtcgttgtaattcagttttatcctagaccatgcaactccacaagtgttttgggtattttgtagtgagga 22229934  T
Q  424 atcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    |||||||||||| || ||||||||||||||||||||||| || ||||||    
T  22229935 atcatgtaaatcaacaaatcaagacatcacgtgaaggatcaaagatatg 22229983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 268 - 472
Target Start/End: Complemental strand, 26330209 - 26330005
Alignment:
Q  268 tacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtc-gttgtaat 366  Q
    |||||||||||| |||  || ||||||||| |||||| |  || ||||||||| ||| | ||||| |||| |||||||||| ||| ||| | ||||||||    
T  26330209 tacttttctttgcattgtaagacaaataagttgagagatggagtagttgtcaatggtctaaggaatatattgtattgttttcacttgagccagttgtaat 26330110  T
Q  367 tcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaa 465  Q
    || |||| |||||| |||||||||||  |||||||||||||||||||| ||||  |||||||||||||| ||  |||||||||||||| |||||||| ||    
T  26330109 tcccttttatcctagatcatgcaacttcataggtgttttgagtgttttgtagt--gaaatcatgtaaattgaaaaatcaagacatcacatgaaggatcaa 26330012  T
Q  466 ggatatg 472  Q
    |||||||    
T  26330011 ggatatg 26330005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 289 - 470
Target Start/End: Original strand, 25680591 - 25680764
Alignment:
Q  289 acaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattc-actttatcctaaatcatgc 387  Q
    ||||| |||||||||||||| ||| || |||| |||||||||||||||| |||||||||| ||||||||||||||||||| | ||||| |||||||||||    
T  25680591 acaaaaaagatgagagttattggatttttcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaattcaattttattctaaatcatgc 25680690  T
Q  388 aactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggata 470  Q
    ||||  ||||||||||||         |||| |||| |||||||||||||| || ||||| |||| ||||||||| |||||||    
T  25680691 aacttcataggtgttttg---------tagtaagaattcatgtaaatcgacaaaccaagaaatcatgtgaaggatcaaggata 25680764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 309 - 472
Target Start/End: Original strand, 20083480 - 20083645
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcactt-tatcctaaatcatgcaactctataggtgttttgag 407  Q
    ||||||||||||  ||||||||||||| |  ||||||||||| ||||||  |||||||||| || ||||||||||||||||| || ||||||||||||||    
T  20083480 aggagttgtcaatagtttgaggaacattttttattgtttttattcgagtatttgtaattcagttctatcctaaatcatgcaattccataggtgttttgag 20083579  T
Q  408 t-gttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    |  |||| |||| | |||| |||||||||| | || ||| |||||||||||| |||||||||||||    
T  20083580 tctttttttagtgaaaaattatgtaaatcggcaaaacaaaacatcacgtgaaagattaaggatatg 20083645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 256 - 472
Target Start/End: Complemental strand, 16622819 - 16622612
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    ||||||||||| || |||| |||  |||| || ||||||| ||  ||||||| |||||||||||| |||||||||||||| | ||||||| || |||| |    
T  16622819 ctatgtttttagtattttt-tttacatttgaagacaaatacgaaaagagttaaaggagttgtcaatggtttgaggaacatgttgtattgtattcactcta 16622721  T
Q  356 gtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacg 454  Q
     | |||||||| ||| ||||||||| |||||||||||  ||||||||||||          ||| ||||||||||||||| ||| ||||||||||||||     
T  16622720 tttgttgtaatacacttttatcctagatcatgcaacttcataggtgttttg---------cagtgagaaatcatgtaaattgacaaatcaagacatcaca 16622630  T
Q  455 tgaaggattaaggatatg 472  Q
    ||||||||||||||||||    
T  16622629 tgaaggattaaggatatg 16622612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 256 - 472
Target Start/End: Original strand, 26070436 - 26070652
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    ||||||||||| |  ||||||||| |||| ||  ||||||||| |  | ||| ||||||||||||   ||||||||| || | |||||||||| | ||||    
T  26070436 ctatgtttttagttattttctttgcattttaaggcaaataagaggtcatttagaggagttgtcaatcatttgaggaaaatttagtattgttttcattcga 26070535  T
Q  356 gtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacg 454  Q
    ||   ||||||||| ||| ||| ||||||||||||||| ||| ||||||||||| |||| |||| ||||||||||||||| | | || |||||||||||     
T  26070536 gttaatgtaattcagttttatcataaatcatgcaactccataagtgttttgagtctttt-tagtgagaaatcatgtaaattggcaaaacaagacatcaca 26070634  T
Q  455 tgaaggattaaggatatg 472  Q
    |||||||| |||||||||    
T  26070635 tgaaggatcaaggatatg 26070652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 309 - 462
Target Start/End: Original strand, 20694655 - 20694808
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgcaactctataggtgttttgag 407  Q
    |||| ||||||| |||||||||||| | | |||||||||| | ||||||| ||||||||||  ||||||| |||| || |||||  ||| ||||||||||    
T  20694655 aggatttgtcaatggtttgaggaactttttgtattgttttcattcgagtcattgtaattcagttttatcccaaattattcaactgcatatgtgttttgag 20694754  T
Q  408 tgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggat 462  Q
    | |||| |||| ||||||||||||||||| | || ||||||||||  ||||||||    
T  20694755 tctttt-tagtaagaaatcatgtaaatcggcaaaacaagacatcatatgaaggat 20694808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 309 - 462
Target Start/End: Complemental strand, 24411029 - 24410876
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgcaactctataggtgttttgag 407  Q
    |||||||||||| ||||||||||| || | |||||||||| | | ||||||||||||||||  ||||||||||||| |||||||    ||||||||||||    
T  24411029 aggagttgtcaatggtttgaggaaaattttgtattgttttcatttgagtcgttgtaattcagttttatcctaaatcgtgcaacttgcgaggtgttttgag 24410930  T
Q  408 tgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggat 462  Q
    | |||| |||| ||||||||||| ||| | | ||  |||||||||| ||||||||    
T  24410929 tatttt-tagtgagaaatcatgtcaattggcaaaataagacatcacatgaaggat 24410876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 394 - 469
Target Start/End: Complemental strand, 25075326 - 25075251
Alignment:
Q  394 ataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggat 469  Q
    |||||||||||||||||||| |||| ||||||||||||||||  | ||||||||||||| ||||||||| ||||||    
T  25075326 ataggtgttttgagtgttttgtagtaagaaatcatgtaaatcatcaaatcaagacatcatgtgaaggatcaaggat 25075251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 394 - 469
Target Start/End: Complemental strand, 25133295 - 25133220
Alignment:
Q  394 ataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggat 469  Q
    |||||||||||||||||||| |||| ||||||||||||||||  | ||||||||||||| ||||||||| ||||||    
T  25133295 ataggtgttttgagtgttttgtagtaagaaatcatgtaaatcatcaaatcaagacatcatgtgaaggatcaaggat 25133220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 334
Target Start/End: Original strand, 30072140 - 30072218
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaaca 334  Q
    ||||||||| | |||||||||||| |||| || ||||||||||||||| ||| |||||||||||| |||||||||||||    
T  30072140 ctatgttttaagtacttttctttggatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaaca 30072218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 431
Target Start/End: Complemental strand, 16603682 - 16603590
Alignment:
Q  340 tattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgta 431  Q
    ||||||||| | |||||||||||||||| | ||| | |||||||||||||| |  |||||||||||||||||||| |||| ||||||||||||    
T  16603682 tattgttttgattcgagtcgttgtaattaaattttagcctaaatcatgcaatttcataggtgttttgagtgttttctagtgagaaatcatgta 16603590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 411
Target Start/End: Complemental strand, 22967995 - 22967839
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    ||||||||||| || ||||||||| || | || ||||||||||||    ||| ||||||||| || |||||||||||||||| ||| |||||| | || |    
T  22967995 ctatgtttttagtagttttctttgcatgttaagacaaataagatggattttagaggagttgtgaatggtttgaggaacatattgtactgttttcattcaa 22967896  T
Q  356 gtcgttgtaattcactt-tatcctaaatcatgcaactctataggtgttttgagtgtt 411  Q
    |||  |||||||||||| |||| ||||| ||| ||||  |||||||||||| |||||    
T  22967895 gtcaatgtaattcacttgtatcataaataatgaaacttcataggtgttttgtgtgtt 22967839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 404
Target Start/End: Complemental strand, 23157888 - 23157792
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgtttt 404  Q
    |||||||||||| |||||||||||| | | |||||||||| | | ||||||||||||||||| |||||| |||||||||||| |  |||||||||||    
T  23157888 aggagttgtcaatggtttgaggaacttttggtattgttttcatttgagtcgttgtaattcacttttatcataaatcatgcaaatgcataggtgtttt 23157792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 435
Target Start/End: Complemental strand, 7742967 - 7742843
Alignment:
Q  311 gagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtg 409  Q
    |||||||||| ||||||| |||||| | ||||||||||   ||||||| ||||||||||| |||||||||||||||| ||    ||| |||||||||||     
T  7742967 gagttgtcaatggtttgaagaacattttgtattgttttcgttcgagtctttgtaattcacttttatcctaaatcatgtaaaatcatatgtgttttgagt- 7742869  T
Q  410 ttttatagtcagaaatcatgtaaatc 435  Q
    |||| || | ||||||||||||||||    
T  7742868 ttttttaatgagaaatcatgtaaatc 7742843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 371 - 455
Target Start/End: Original strand, 22754972 - 22755056
Alignment:
Q  371 tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgt 455  Q
    ||||||||| || ||||||||  ||||||||||||||||||||  ||| ||||||||||||||||  | ||||||||||| ||||    
T  22754972 tttatcctagattatgcaacttcataggtgttttgagtgttttgaagtgagaaatcatgtaaatcatcaaatcaagacataacgt 22755056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 313 - 392
Target Start/End: Original strand, 24268574 - 24268654
Alignment:
Q  313 gttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactc 392  Q
    |||||| | |||||||||||||| | |||||||||| ||||||||| || |||||||| ||||||||| ||||||||||||    
T  24268574 gttgtcgatggtttgaggaacatcttgtattgttttcactcgagtcattataattcacttttatcctagatcatgcaactc 24268654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 313 - 392
Target Start/End: Original strand, 24345203 - 24345283
Alignment:
Q  313 gttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactc 392  Q
    |||||| | |||||||||||||| | |||||||||| ||||||||| || |||||||| ||||||||| ||||||||||||    
T  24345203 gttgtcgatggtttgaggaacatcttgtattgttttcactcgagtcattataattcacttttatcctagatcatgcaactc 24345283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 436
Target Start/End: Original strand, 25367654 - 25367736
Alignment:
Q  354 gagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcg 436  Q
    ||||||||| |||||| ||| ||| ||||||||||||||  ||||||||||||||| |||| |||| |||||||||||||||||    
T  25367654 gagtcgttgaaattcagttttatcataaatcatgcaacttcataggtgttttgagtctttt-tagtgagaaatcatgtaaatcg 25367736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 436
Target Start/End: Complemental strand, 11997931 - 11997866
Alignment:
Q  371 tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcg 436  Q
    ||||| |||||||||||||||  ||||||||||||||| |||| |||| ||||| |||||||||||    
T  11997931 tttatactaaatcatgcaacttcataggtgttttgagttttttttagtgagaaaacatgtaaatcg 11997866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 436
Target Start/End: Original strand, 19331526 - 19331651
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgcaactctataggtgttttgag 407  Q
    ||||||||||||  ||||||| ||| | | ||||||| || | |||||||||||||||| |  ||||||||||||||||||| || ||  ||||||||||    
T  19331526 aggagttgtcaattgtttgagaaactttttgtattgtgttcattcgagtcgttgtaatttagttttatcctaaatcatgcaattccat--gtgttttgag 19331623  T
Q  408 tgttttatagtcagaaatcatgtaaatcg 436  Q
    | |||| | || |||||||||||||||||    
T  19331624 tctttt-ttgtgagaaatcatgtaaatcg 19331651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 472
Target Start/End: Original strand, 30072218 - 30072294
Alignment:
Q  396 aggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    |||||||||||||| ||| ||||  |||||||| | ||||||| |||||||||||||| |||||||| || ||||||    
T  30072218 aggtgttttgagtgctttgtagtgggaaatcatattaatcgacaaatcaagacatcacatgaaggatcaaagatatg 30072294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 468
Target Start/End: Complemental strand, 19763927 - 19763833
Alignment:
Q  371 tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaagga 468  Q
    |||||||||||||||||||||  ||  ||||||||||| |||| |||| ||||||||||||||||| | || | |||||||| |||||| || |||||    
T  19763927 tttatcctaaatcatgcaacttcat--gtgttttgagtctttt-tagtgagaaatcatgtaaatcggcaaaacgagacatcaagtgaagaatcaagga 19763833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 462
Target Start/End: Original strand, 30790824 - 30790944
Alignment:
Q  342 ttgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacga 440  Q
    ||||||||| | |||||||| ||||||| ||| ||||||||| || |||||  || |||||||||||| |||| |||| | |||| |||||||||| | |    
T  30790824 ttgtttttatttgagtcgttataattcagttttatcctaaattatccaacttcattggtgttttgagtctttt-tagtgaaaaattatgtaaatcggcaa 30790922  T
Q  441 atcaagacatcacgtgaaggat 462  Q
      |||||||||| |||||||||    
T  30790923 cacaagacatcatgtgaaggat 30790944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 392
Target Start/End: Complemental strand, 18873111 - 18873059
Alignment:
Q  339 gtattgtttttactcgagtcgttgtaattcactttatcctaaatcatgcaactc 392  Q
    |||||||||| | |||||||| | |||||||||||||| |||||||||||||||    
T  18873111 gtattgttttcattcgagtcgct-taattcactttatcttaaatcatgcaactc 18873059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 434
Target Start/End: Original strand, 18178162 - 18178241
Alignment:
Q  356 gtcgttgtaattcacttt-atcctaaatcat-gcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaat 434  Q
    |||||||||||||| ||| |||||||||||| ||||||  |||||| |||| ||| |||| |||| |||||||||||||||    
T  18178162 gtcgttgtaattcagttttatcctaaatcattgcaacttcataggtatttttagtctttt-tagtgagaaatcatgtaaat 18178241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 459
Target Start/End: Complemental strand, 24279638 - 24279575
Alignment:
Q  395 taggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaag 459  Q
    ||||||||||||||  ||| |||| ||||||||| ||||||||| || ||||||||||| |||||    
T  24279638 taggtgttttgagtcattt-tagtgagaaatcatataaatcgacaaaacaagacatcacatgaag 24279575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 459
Target Start/End: Original strand, 24382576 - 24382639
Alignment:
Q  395 taggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaag 459  Q
    ||||||||||||||  ||| |||| ||||||||| ||||||||| || ||||||||||| |||||    
T  24382576 taggtgttttgagtcattt-tagtgagaaatcatataaatcgacaaaacaagacatcacatgaag 24382639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 225 - 462
Target Start/End: Original strand, 30675414 - 30675653
Alignment:
Q  225 gtgatgacagagcatcacatgccactttttactatgtttttaatacttttctttgt-atttcaaaacaaataagatgagagttataggagttgtcaacgg 323  Q
    ||||||||||||||||| ||| || ||||| |||||||||||  |||||||||| | ||||  | ||||||||||||| | ||| |||||||||||| ||    
T  30675414 gtgatgacagagcatcatatgacattttttgctatgtttttagaacttttctttttcatttgtagacaaataagatgaaaattagaggagttgtcaatgg 30675513  T
Q  324 tttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcaga 422  Q
    |||||||||||||| |||||||||| ||||||||||||||||| ||| ||| ||||| |||||||||||| ||||||||||||||||||||||||| |||    
T  30675514 tttgaggaacatattgtattgttttcactcgagtcgttgtaatacacttttgtcctatatcatgcaactccataggtgttttgagtgttttatagtgaga 30675613  T
Q  423 aatcatgtaaatcgacgaatcaagacatcacgtgaaggat 462  Q
    |||||||||||||| | | | ||||||||| |||||||||    
T  30675614 aatcatgtaaatcggcaatttaagacatcatgtgaaggat 30675653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 250 - 472
Target Start/End: Original strand, 26657432 - 26657655
Alignment:
Q  250 tttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgttttt 349  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||| | |||||| || |||||||||||| ||||||||||| |||  ||||||||||     
T  26657432 ttttgactatgtttttattacttttctttgcatttgaagacaaatatgttgagagatagaggagttgtcaatggtttgaggaatataatgtattgttttc 26657531  T
Q  350 actcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagac 448  Q
    |||||| |||||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||| |||| | ||||||||||||||||| |||||||||    
T  26657532 actcgattcgttgtaattcacttttatcctagatcacgcaactccataggtgttttgagtgttttgtagtgaaaaatcatgtaaatcgacaaatcaagac 26657631  T
Q  449 atcacgtgaaggattaaggatatg 472  Q
    || | ||||||||| |||| ||||    
T  26657632 attaggtgaaggatcaaggctatg 26657655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 223 - 472
Target Start/End: Complemental strand, 11770180 - 11769930
Alignment:
Q  223 tagtgatgacagagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacg 322  Q
    ||||||||| |||||||||||||  | ||||  |||||||||||||||| ||||||| |||| || | ||||||||||||||||| || | ||||||| |    
T  11770180 tagtgatgatagagcatcacatgatatttttgtctatgtttttaatactattctttgcatttgaagataaataagatgagagttagagaatttgtcaatg 11770081  T
Q  323 gtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcag 421  Q
    |||| |||||||||| |||||||||| ||||| ||||||||||||||| |||||||||||||||| ||||  || ||||| |||||||||||  ||| ||    
T  11770080 gtttaaggaacatattgtattgttttcactcgtgtcgttgtaattcacttttatcctaaatcatgaaacttcatgggtgtgttgagtgttttgcagtgag 11769981  T
Q  422 aaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||||||||||||||||  |||||||||||||| |||| ||| || ||||||    
T  11769980 aaatcatgtaaatcgaaaaatcaagacatcacatgaatgatcaaagatatg 11769930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 226 - 469
Target Start/End: Complemental strand, 8247840 - 8247596
Alignment:
Q  226 tgatgacagagcatcacatgccactttttactatgtttttaatac-ttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggt 324  Q
    |||||||||||||||| ||| || |||| |||||||||||||||| ||||||||| |||| || ||||||||||||||||||| ||||| | |||| |||    
T  8247840 tgatgacagagcatcatatgaca-ttttgactatgtttttaataccttttctttgcatttgaagacaaataagatgagagttagaggagatatcaatggt 8247742  T
Q  325 ttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaa 423  Q
    |||||||||||||  |||| |||| ||| ||||| ||||||||   ||| | |||| |||||||||||| |||||||||||||||||||| |||| || |    
T  8247741 ttgaggaacatattttattattttcacttgagtcattgtaattttgttttaccctagatcatgcaactccataggtgttttgagtgttttgtagtgagga 8247642  T
Q  424 atcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggat 469  Q
    |||||||||||| || ||||||||||||||||||| ||| ||||||    
T  8247641 atcatgtaaatcaacaaatcaagacatcacgtgaaagatcaaggat 8247596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 226 - 468
Target Start/End: Complemental strand, 25730754 - 25730511
Alignment:
Q  226 tgatgacagagcatcacatgccacttttta-ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggt 324  Q
    |||||||||||||||| |||  | |||||  ||||||||| | |||||||||||| |||| |||||||||||||||||||||| ||| | |||||| ||     
T  25730754 tgatgacagagcatcatatgatatttttttgctatgtttt-agtacttttctttgcatttgaaaacaaataagatgagagttagagggggtgtcaatggc 25730656  T
Q  325 ttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaa 423  Q
    ||||||| | ||| |||||||||| | || | || ||| |||||| ||| ||||||||||||||||||  | |||||||||||||||||| |||  ||||    
T  25730655 ttgaggagcgtattgtattgttttcattcaaatcattgaaattcaattttatcctaaatcatgcaacttcacaggtgttttgagtgttttgtagcgagaa 25730556  T
Q  424 atcatgtaaatcgacgaatcaagacatcacgtgaaggattaagga 468  Q
    ||||||||||||||| |||||||| ||||| |||||||| |||||    
T  25730555 atcatgtaaatcgacaaatcaagatatcacatgaaggatcaagga 25730511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 322 - 472
Target Start/End: Complemental strand, 25727996 - 25727845
Alignment:
Q  322 ggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtca 420  Q
    ||||| |||||  ||| |||||||||| |||| | ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| |    
T  25727996 ggtttaaggaatgtattgtattgttttcactctaatcgttgtaattcacttttatcctaaatcatgcaactcaataggtgttttgagtgttttgtagtga 25727897  T
Q  421 gaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    |||||||||||||||||| |||||| | ||||| ||||||||||||||||||    
T  25727896 gaaatcatgtaaatcgacaaatcaatatatcacatgaaggattaaggatatg 25727845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 322 - 472
Target Start/End: Complemental strand, 25736404 - 25736253
Alignment:
Q  322 ggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtca 420  Q
    ||||| |||||  ||| |||||||||| |||| | ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| |    
T  25736404 ggtttaaggaatgtattgtattgttttcactctaatcgttgtaattcacttttatcctaaatcatgcaactcaataggtgttttgagtgttttgtagtga 25736305  T
Q  421 gaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    |||||||||||||||||| |||||| | ||||| ||||||||||||||||||    
T  25736304 gaaatcatgtaaatcgacaaatcaatatatcacatgaaggattaaggatatg 25736253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 256 - 472
Target Start/End: Original strand, 23223373 - 23223591
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgttttt-actcg 354  Q
    ||||||||| | |||||||||||| ||||  | |||| ||||||| |||||| |||||||||||| ||||||||||||| || ||||| ||||| |||||    
T  23223373 ctatgttttaagtacttttctttgcattttgagacaattaagatgggagttagaggagttgtcaatggtttgaggaacacattgtattttttttcactcg 23223472  T
Q  355 agtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcac 453  Q
    | ||||||||||| ||||| ||||||||||||||||||| | ||||||||| | |||||| |||| |||||||||||||||| || | |||||||||| |    
T  23223473 attcgttgtaatttacttttatcctaaatcatgcaactccaaaggtgtttttaatgttttgtagtgagaaatcatgtaaatcaacaagtcaagacatcgc 23223572  T
Q  454 gtgaaggattaaggatatg 472  Q
     |||||  | |||||||||    
T  23223573 atgaagattcaaggatatg 23223591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 256 - 472
Target Start/End: Complemental strand, 18301158 - 18300939
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataaga--tgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactc 353  Q
    ||||||||||  |||||||||||| |||| || ||||| || |  ||||||||||||| |||||||| ||||||||||| |||| ||| ||||||   |     
T  18301158 ctatgtttttggtacttttctttgcatttgaagacaaacaaaaaatgagagttataggggttgtcaatggtttgaggaatatattgtactgttttcttta 18301059  T
Q  354 gagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatca 452  Q
     ||||||||||||| ||||| |||  |||||||||||||  ||||||||||||||||||||| ||| |  |||||||||||| ||| |||||||||||||    
T  18301058 aagtcgttgtaattgacttttatcgaaaatcatgcaacttcataggtgttttgagtgttttaaagtgatgaatcatgtaaatagacaaatcaagacatca 18300959  T
Q  453 cgtgaaggattaaggatatg 472  Q
    |||||||||| |||||||||    
T  18300958 cgtgaaggatcaaggatatg 18300939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 256 - 433
Target Start/End: Original strand, 50047143 - 50047321
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    |||||||||| ||||||||||||| |||| || ||||||||||||| |  || |||||||||||| | |||||| ||||||| |||||||||| ||||||    
T  50047143 ctatgtttttgatacttttctttgcatttgaagacaaataagatgaaaagtagaggagttgtcaatgatttgagaaacatattgtattgttttcactcga 50047242  T
Q  356 gtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaa 433  Q
    ||| | ||||||||| ||||||||||||||| |||||| |||  ||||||||||||||| |||  ||||||||||||||    
T  50047243 gtcatggtaattcacttttatcctaaatcatacaactccatatatgttttgagtgttttgtagcgagaaatcatgtaaa 50047321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 257 - 472
Target Start/End: Original strand, 34381671 - 34381889
Alignment:
Q  257 tatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgag 356  Q
    |||||||||| || |||| |||| |||| ||  |||||||||||  | ||| ||||||||| || ||||||| ||||||||  ||||||||| | |||||    
T  34381671 tatgtttttattagttttatttgcatttgaaggcaaataagatgtaatttagaggagttgttaatggtttgaagaacatattatattgttttcattcgag 34381770  T
Q  357 tcgttgtaattcactt-tatcctaaatcatgcaactctataggtgttttgagtgttt--tatagtcagaaatcatgtaaatcgacgaatcaagacatcac 453  Q
    |||||||||||||||| ||| |||||||| ||||||  ||||||||||||||| |||  |||||| | |||| |||||||||||| |||||| |||||||    
T  34381771 tcgttgtaattcacttctattctaaatcacgcaacttcataggtgttttgagtattttgtatagtgaaaaataatgtaaatcgacaaatcaaaacatcac 34381870  T
Q  454 gtgaaggattaaggatatg 472  Q
    ||||| ||| |||||||||    
T  34381871 gtgaaagatcaaggatatg 34381889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 250 - 389
Target Start/End: Original strand, 12810278 - 12810418
Alignment:
Q  250 tttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgttttt 349  Q
    ||||||||||||||||| ||||||||||| ||||| || ||||||||| |||||| || |||||||||||| |||||||||||||||| ||||||||||     
T  12810278 tttttactatgtttttagtacttttctttatatttaaagacaaataagttgagagatagaggagttgtcaatggtttgaggaacatattgtattgttttc 12810377  T
Q  350 actcgagtcgttgtaattca-ctttatcctaaatcatgcaa 389  Q
    | || |||||||||||||||  ||||||||| |||||||||    
T  12810378 attcaagtcgttgtaattcatttttatcctagatcatgcaa 12810418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 250 - 469
Target Start/End: Original strand, 30781715 - 30781936
Alignment:
Q  250 tttttactatgtttttaatactttt-ctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttt 348  Q
    ||||| ||||||||||| || |||| ||||| |||| || ||||||||||||||||||| |||||||||  |   ||| || || |||| ||||||||||    
T  30781715 tttttgctatgtttttagtaatttttctttgcatttgaagacaaataagatgagagttagaggagttgttgataattttagaaatatattgtattgtttt 30781814  T
Q  349 tactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaaga 447  Q
     | ||||| | |||||||||| ||| |||| | ||||| |||||| |||||||||||||||||||| |||| || |||||||||||||  | ||||||||    
T  30781815 caatcgagacattgtaattcagttttatccaagatcatacaactccataggtgttttgagtgttttgtagtgaggaatcatgtaaatcatcaaatcaaga 30781914  T
Q  448 catcacgtgaaggattaaggat 469  Q
    ||||| ||||||||| ||||||    
T  30781915 catcatgtgaaggatcaaggat 30781936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 317 - 472
Target Start/End: Original strand, 26102080 - 26102235
Alignment:
Q  317 tcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttat 415  Q
    |||| |||||||||| ||| | |||||||||| | |||||| ||||||||||||||| ||||||||||||||||||| || |||||||||||| |||| |    
T  26102080 tcaatggtttgaggaccattttgtattgttttcattcgagttgttgtaattcacttttatcctaaatcatgcaactccatgggtgttttgagtctttt-t 26102178  T
Q  416 agtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||| ||| ||| || |||||||| || |||||||||||||||| ||| |||||||||    
T  26102179 agtgagatatcgtgcaaatcgacaaaacaagacatcacgtgaatgatcaaggatatg 26102235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 290 - 453
Target Start/End: Complemental strand, 25494598 - 25494443
Alignment:
Q  290 caaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgca 388  Q
    |||||| ||||| ||||| |||||||||||| |||||||||||||||| || |||||||  || ||||| |||||||| || ||||||||||||||||||    
T  25494598 caaataggatgaaagttagaggagttgtcaatggtttgaggaacatattgtcttgttttctcttgagtccttgtaatttacttttatcctaaatcatgca 25494499  T
Q  389 actctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcac 453  Q
    |||  ||||||||||||         |||| ||||||||||||||||||| ||||||||||||||    
T  25494498 actacataggtgttttg---------tagtgagaaatcatgtaaatcgacaaatcaagacatcac 25494443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 226 - 407
Target Start/End: Complemental strand, 12424097 - 12423915
Alignment:
Q  226 tgatgacagagcatcacatgccactttttactatgtttttaatactttt-ctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggt 324  Q
    |||||||||||||||| |||  | ||||  ||||||||||| ||||||| ||||| |||| || ||||||||||||||||  | ||| ||||| || |||    
T  12424097 tgatgacagagcatcatatgata-ttttggctatgtttttagtactttttctttgcatttgaagacaaataagatgagagacagaggcgttgttaatggt 12423999  T
Q  325 ttgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgcaactctataggtgttttgag 407  Q
    |||||||||||||  ||||||||| ||||||||| ||||||||||  |||||| || |||||||||||| ||| ||||||||||    
T  12423998 ttgaggaacatatgatattgttttcactcgagtcattgtaattcagttttatcttagatcatgcaactccatatgtgttttgag 12423915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 355 - 472
Target Start/End: Original strand, 31313613 - 31313730
Alignment:
Q  355 agtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcac 453  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||||||||| |||| |||| ||||||||||||||| |   || ||| |||||||    
T  31313613 agtcgttgtaattcacttttatcctaaatcatgcaacttcataggtgttttgagt-ttttttagtaagaaatcatgtaaattggaaaaacaatacatcac 31313711  T
Q  454 gtgaaggattaaggatatg 472  Q
    ||||||||||||| |||||    
T  31313712 gtgaaggattaagaatatg 31313730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 226 - 472
Target Start/End: Complemental strand, 23519939 - 23519704
Alignment:
Q  226 tgatgacagagcatcacatgccactttttactatgttttt--aatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacgg 323  Q
    |||||||| ||||||| ||| | ||||| |||||||||||  | ||||||||||||  ||| || ||||||| |||||||| || |  |||||| ||  |    
T  23519939 tgatgacaaagcatcatatgac-cttttgactatgtttttttagtacttttctttgcttttgaagacaaatatgatgagagatagaaaagttgttaatag 23519841  T
Q  324 tttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcaga 422  Q
    |||||||||||||| |||   |||| |||| |||| ||||||||||| ||||||||| |||||||||||||||          |||||||| |||| |||    
T  23519840 tttgaggaacatattgta---ttttcactcaagtcattgtaattcacttttatcctagatcatgcaactctat----------agtgttttgtagtgaga 23519754  T
Q  423 aatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||||||||||||||||  |||||||||| ||||||||||| ||| |||||    
T  23519753 aatcatgtaaatcgacacatcaagacattacgtgaaggatcaagaatatg 23519704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 258 - 469
Target Start/End: Original strand, 18391046 - 18391257
Alignment:
Q  258 atgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagt 357  Q
    ||||||||| |  |||||| ||||||| || ||||||||||||  | ||| || ||||||||| |||||||| ||||| |  |||| |||| | | ||||    
T  18391046 atgtttttagttattttctgtgtatttaaagacaaataagatgtcatttaaagaagttgtcaatggtttgagtaacattttatattattttcatttgagt 18391145  T
Q  358 cgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtg 456  Q
    |||||||||| || ||||||||| ||||||||| || ||||| |||| |||| |||| |||  |||||||||||||||   ||||  |||||||||| ||    
T  18391146 cgttgtaattaacttttatcctagatcatgcaattccataggcgtttagagtatttt-taggaagaaatcatgtaaattagcgaaataagacatcacatg 18391244  T
Q  457 aaggattaaggat 469  Q
    ||| || ||||||    
T  18391245 aagaatgaaggat 18391257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 257 - 424
Target Start/End: Complemental strand, 25266496 - 25266329
Alignment:
Q  257 tatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgag 356  Q
    |||||||||| |||||||||||| |||| || ||| | ||||| |||| || || ||||||||| ||| |||  ||||||| |||||||||| |||||||    
T  25266496 tatgtttttagtacttttctttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgag 25266398  T
Q  357 tcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaa 424  Q
    || |||||||||| ||| ||| |  |||||| ||||  ||| |||||||||||||||| |||| |||||    
T  25266397 tcattgtaattcatttttatcttggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 25266329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 225 - 406
Target Start/End: Complemental strand, 21451999 - 21451818
Alignment:
Q  225 gtgatgacagagcatcacatgccactttttactatgtttttaatac-ttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacgg 323  Q
    ||||||||| ||||||| ||| || ||||  ||||||||||| ||| ||||||||| |||| || |||||||||||||||| || | |||||||||| ||    
T  21451999 gtgatgacatagcatcatatgaca-ttttggctatgtttttagtacgttttctttgcatttgaagacaaataagatgagagatagaagagttgtcaatgg 21451901  T
Q  324 tttgaggaacatatcgtattgtttttactcgagtcgttgtaattc-actttatcctaaatcatgcaactctataggtgttttga 406  Q
    | | |||||||||| ||||| |||| |||||| || || ||||||   ||||||||| ||  |||||||| |||||||||||||    
T  21451900 tat-aggaacatattgtattattttcactcgactcattataattctgttttatcctagatagtgcaactccataggtgttttga 21451818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 309 - 472
Target Start/End: Original strand, 25126495 - 25126658
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgcaactctataggtgttttgag 407  Q
    |||||||||||| |||||||| ||  | | |||||||||||| | ||||||| ||||||||  ||||||||||||||||  | | |||| ||||||||||    
T  25126495 aggagttgtcaatggtttgagaaattttttgtattgtttttatttgagtcgtggtaattcagttttatcctaaatcatgtgattatatatgtgttttgag 25126594  T
Q  408 tgttttatagtcagaaatcatgtaaa-tcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    | |||| || | |||||||||||||| | ||  ||| |||||||||||||||||||| ||||||||    
T  25126595 tctttt-taatgagaaatcatgtaaattagaaaaat-aagacatcacgtgaaggattgaggatatg 25126658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 355 - 472
Target Start/End: Complemental strand, 52271298 - 52271181
Alignment:
Q  355 agtcgttgtaattcactttat-cctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcac 453  Q
    ||||||||| ||||||||||| ||||||| ||||||||| |||| |||||||||| |||| |||| |||||| |||||||||| | || ||| ||  |||    
T  52271298 agtcgttgtcattcactttattcctaaattatgcaactccatagatgttttgagtctttt-tagtgagaaattatgtaaatcggcaaaacaaaacgccac 52271200  T
Q  454 gtgaaggattaaggatatg 472  Q
    |||||||||  ||||||||    
T  52271199 gtgaaggatcgaggatatg 52271181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 467
Target Start/End: Complemental strand, 15417073 - 15416915
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgag 407  Q
    |||||||||  | |||||||| ||||| |  ||||||||| | || | || || ||||||||||| ||| |||||||||||||| |||||||||||||||    
T  15417073 aggagttgttcatggtttgagaaacattttttattgttttcattcaattcattttaattcacttttatcttaaatcatgcaactgtataggtgttttgag 15416974  T
Q  408 t-gttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaagg 467  Q
    |  ||||||||||  ||||||||||| ||| | || ||||||| ||| |||||||| ||||    
T  15416973 tctttttatagtc--aaatcatgtaattcggcaaagcaagacaccacatgaaggatcaagg 15416915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 313 - 472
Target Start/End: Complemental strand, 19257899 - 19257740
Alignment:
Q  313 gttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattc-actttatcctaaatcatgcaactctataggtgttttgagtgtt 411  Q
    |||||||| | |||||||||| |   |||||||||| | || |||| ||||||||| | ||||||||||||||||||| ||  |||||||||||||| ||    
T  19257899 gttgtcaatgatttgaggaactttctgtattgttttcattctagtcattgtaattcgattttatcctaaatcatgcaagtccttaggtgttttgagtatt 19257800  T
Q  412 ttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    || |||| ||||||| ||||||| | |  | ||||||||||| |||| |||  ||||||||    
T  19257799 tt-tagtgagaaatcgtgtaaattggcataacaagacatcacatgaaagatcgaggatatg 19257740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 462
Target Start/End: Complemental strand, 23521730 - 23521675
Alignment:
Q  407 gtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggat 462  Q
    ||||||| |||| |||||||||||||||||||  ||||||||||||||||||||||    
T  23521730 gtgttttgtagtgagaaatcatgtaaatcgacacatcaagacatcacgtgaaggat 23521675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 324 - 472
Target Start/End: Complemental strand, 27461266 - 27461117
Alignment:
Q  324 tttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcaga 422  Q
    |||||||||||| | |||||||||| | || ||| ||| |||||||| |||||||||||| ||||||||  ||||||||||  ||| |||| |||| |||    
T  27461266 tttgaggaacattttgtattgttttcattcaagttgttataattcacttttatcctaaattatgcaacttcataggtgtttgtagtctttt-tagtaaga 27461168  T
Q  423 aatcatgtaaatc-gacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    |||||||||| || ||  || ||||||||||| |||| |||  ||||||||    
T  27461167 aatcatgtaagtcggaaaaaacaagacatcacatgaaagatcgaggatatg 27461117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 271 - 350
Target Start/End: Complemental strand, 24903433 - 24903354
Alignment:
Q  271 ttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgttttta 350  Q
    ||||||||| |||| || ||||||| ||||||| |||  ||||||||||| | |||||||||||||| ||||| ||||||    
T  24903433 ttttctttgcatttgaagacaaatatgatgagaattagtggagttgtcaatgatttgaggaacatattgtatttttttta 24903354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 472
Target Start/End: Complemental strand, 26854402 - 26854256
Alignment:
Q  324 tttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcaga 422  Q
    |||||||||| | | ||||| |||| | || ||||||||||||||| ||| ||||||| |||| |||||  |||| |||||||||| |||| |||  |||    
T  26854402 tttgaggaactttttgtattcttttcattcaagtcgttgtaattcaattttatcctaattcatacaacttcatagatgttttgagtctttt-tag--aga 26854306  T
Q  423 aatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||||||||||| || | || |||||||| | ||||||||| || ||||||    
T  26854305 aatcatgtaaaccggcaaaacaagacattaagtgaaggatcaatgatatg 26854256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 414
Target Start/End: Complemental strand, 13807839 - 13807746
Alignment:
Q  322 ggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgtttta 414  Q
    ||||||| |||||| | |||||||||| | || |||||||||||||||| || ||||  ||||||||||||  |||| |||||||||| |||||    
T  13807839 ggtttgatgaacattttgtattgttttcattcaagtcgttgtaattcacgttcatccctaatcatgcaacttcatagttgttttgagtctttta 13807746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 472
Target Start/End: Original strand, 21548694 - 21548826
Alignment:
Q  340 tattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgac 438  Q
    ||||||||| | ||||||||||||||||||  |||||||||||  ||||||||| ||| |||||| ||||  ||| ||||  ||||||| ||||||||      
T  21548694 tattgttttcattcgagtcgttgtaattcagttttatcctaaaaaatgcaactccataagtgtttggagt-ctttctagtgtgaaatcaagtaaatcgga 21548792  T
Q  439 gaatcaagacatcacgtgaaggattaaggatatg 472  Q
     || ||||||||||||| ||| |||  |||||||    
T  21548793 aaaacaagacatcacgtaaagaattgtggatatg 21548826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 472
Target Start/End: Original strand, 18795204 - 18795359
Alignment:
Q  317 tcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttat 415  Q
    |||| |||||||||||||| | |||| ||||| | | ||||  |||||||| ||||| ||||||| |||| || ||  |||||||||||||||  ||| |    
T  18795204 tcaatggtttgaggaacattttgtatcgttttcatttgagtaattgtaatttacttttatcctaagtcatacagcttcataggtgttttgagtcattt-t 18795302  T
Q  416 agtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||| ||||||| ||||||||  | || ||||||||||| ||| |||| || ||||||    
T  18795303 agtgagaaatcgtgtaaatcagcaaaacaagacatcacatgatggatcaaagatatg 18795359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 472
Target Start/End: Complemental strand, 15298967 - 15298806
Alignment:
Q  311 gagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgcaactctataggtgttttgagtg 409  Q
    |||||||||| |||||||||||  | | ||||||| || | | || || |||||||| |  ||||||| |||||||||||||  |||||||||||| ||     
T  15298967 gagttgtcaatggtttgaggaagtttttgtattgtattcatttgaatcattgtaattaagttttatccaaaatcatgcaacttcataggtgttttgtgtc 15298868  T
Q  410 ttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    | || |||| | ||||||||||||||| | || ||||| |||| || ||||||  ||||||||    
T  15298867 tatt-tagtgataaatcatgtaaatcggcaaaacaagaaatcatgtaaaggatcgaggatatg 15298806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 397
Target Start/End: Original strand, 19884190 - 19884276
Alignment:
Q  312 agttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctatag 397  Q
    |||| |||| |||||||||||| | |  ||||||||| | |||| ||| |||||||| |||| ||||||||||||||||||| ||||    
T  19884190 agttatcaatggtttgaggaaccttttatattgttttcattcgattcgatgtaattctcttttatcctaaatcatgcaactccatag 19884276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 25777990 - 25777933
Alignment:
Q  250 tttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagtta 307  Q
    ||||| ||||||| ||| | |||||||||| |||| |||| |||||||||||||||||    
T  25777990 tttttgctatgttcttagtgcttttctttgcatttgaaaataaataagatgagagtta 25777933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 8e-56; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 257 - 472
Target Start/End: Complemental strand, 34864443 - 34864231
Alignment:
Q  257 tatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgag 356  Q
    |||||||||| ||||||||||||||||| || ||||||||||| | ||||| |||||||||||| |||||||||||| |||| ||||||||| ||||  |    
T  34864443 tatgtttttagtacttttctttgtatttgaagacaaataagataaaagttagaggagttgtcaatggtttgaggaacgtatcatattgttttcactc--g 34864346  T
Q  357 tcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgt 455  Q
    || ||||||||||| |||||||||||| ||| ||||| ||  |||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  34864345 tcattgtaattcacttttatcctaaattatgaaactccat--gtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacatcacgt 34864248  T
Q  456 gaaggattaaggatatg 472  Q
    ||||||| || ||||||    
T  34864247 gaaggatcaaagatatg 34864231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 228 - 472
Target Start/End: Original strand, 15192137 - 15192382
Alignment:
Q  228 atgacagagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttg 327  Q
    |||||||||||||| ||| || |||||  |||||||||  |||||||||||| |||| || ||||||||||||||||     |||||||| ||   ||||    
T  15192137 atgacagagcatcatatgacattttttgttatgtttttcgtacttttctttgcatttgaagacaaataagatgagagacgggggagttgttaattttttg 15192236  T
Q  328 aggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatc 426  Q
     ||||||||| |||||||||| |||| ||| ||||||||||||||| |||||| ||| |||| ||| |||||||||||||||||||| |||| |||||||    
T  15192237 tggaacatattgtattgttttcactcaagttgttgtaattcacttttatcctagatcgtgcagctccataggtgttttgagtgttttgtagtgagaaatc 15192336  T
Q  427 atgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    |||||||||||| || |||||||||||||||||||| |||||||||    
T  15192337 atgtaaatcgacaaaccaagacatcacgtgaaggatcaaggatatg 15192382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 261 - 472
Target Start/End: Complemental strand, 25315379 - 25315167
Alignment:
Q  261 tttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgt 360  Q
    |||||| |||||||||||  |||| || | |||||||||||||| || |||||||||||| | |||||||||||||| |||||||||| ||| |||||||    
T  25315379 tttttagtacttttctttacatttgaagataaataagatgagagatagaggagttgtcaatgctttgaggaacatattgtattgttttcacttgagtcgt 25315280  T
Q  361 tgtaattca-ctttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaag 459  Q
    ||||||| |  ||||||||| |||||||||||| ||| | |||||||||  ||| |||| || |||||||||||||||| |||||||||||| | |||||    
T  25315279 tgtaattaagttttatcctagatcatgcaactccatatgggttttgagtaatttgtagtgaggaatcatgtaaatcgacaaatcaagacatcgcatgaag 25315180  T
Q  460 gattaaggatatg 472  Q
    ||| |||||||||    
T  25315179 gatcaaggatatg 25315167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 227 - 462
Target Start/End: Complemental strand, 9783165 - 9782929
Alignment:
Q  227 gatgacagagcatcacatgccactttttactatgtttttaatactttt-ctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtt 325  Q
    ||||||||||||||| ||| || ||||  ||||||||||| ||||||| ||||  |||| ||  ||||| |||||||||||| ||||||||||||  |||    
T  9783165 gatgacagagcatcatatgaca-ttttgcctatgtttttagtactttttctttacatttgaaggcaaatgagatgagagttagaggagttgtcaatagtt 9783067  T
Q  326 tgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaa 424  Q
    |||||||||||| |||||||||| |||| | || ||||||||||  |||||  || |||||||||||| |||||| ||| ||||||||| |||| || ||    
T  9783066 tgaggaacatattgtattgttttcactcaattcattgtaattcagttttattttagatcatgcaactccataggtttttagagtgttttgtagtgaggaa 9782967  T
Q  425 tcatgtaaatcgacgaatcaagacatcacgtgaaggat 462  Q
    ||||||||||| || ||||||||||||| ||| |||||    
T  9782966 tcatgtaaatcaacaaatcaagacatcatgtggaggat 9782929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 346 - 472
Target Start/End: Complemental strand, 17026759 - 17026632
Alignment:
Q  346 ttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatca 444  Q
    |||||||||||| ||||||||||||||| |||||| |||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||| ||| |    
T  17026759 ttttactcgagttgttgtaattcacttttatcctagatcatgcaactccataggtgttttgagtgttttgtagtcataaatcatgtaaatcgacaaatta 17026660  T
Q  445 agacatcacgtgaaggattaaggatatg 472  Q
    ||||||||| |||||||| ||| |||||    
T  17026659 agacatcacatgaaggatcaagtatatg 17026632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 225 - 472
Target Start/End: Original strand, 27302709 - 27302956
Alignment:
Q  225 gtgatgacagagcatcacatgccactttttactatgttttt-aatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacgg 323  Q
    ||||||||| ||||||| ||  || |||| ||||||||||| |||| ||||| ||| |||| || ||||||| ||||| || || || ||||||||| ||    
T  27302709 gtgatgacaaagcatcatataaca-ttttgactatgttttttaataattttcgttgcatttgaagacaaatatgatgatagatagagaagttgtcaatgg 27302807  T
Q  324 tttgaggaacatatcgtattgtttttactcgagtcgttgtaattcactt-tatcctaaatcatgcaactctataggtgttttgagtgttttatagtcaga 422  Q
    |||||||||||| | |||||||||| ||||||||| |||||||||| || ||| ||| |||||||||||  || |||||||| ||| |||| |||| |      
T  27302808 tttgaggaacattttgtattgttttcactcgagtcattgtaattcaattatatactagatcatgcaacttcat-ggtgtttttagtattttgtagtgatg 27302906  T
Q  423 aatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    |||||||||||||||| ||| ||||||||||||| | ||| |||||||||    
T  27302907 aatcatgtaaatcgacaaattaagacatcacgtgcaagatcaaggatatg 27302956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 259 - 462
Target Start/End: Original strand, 18897956 - 18898151
Alignment:
Q  259 tgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtc 358  Q
    |||||||| |||||||||||| |||| || ||||||||| |||||| || | || ||||||| ||||| |||||||||| |||||||||| ||||||| |    
T  18897956 tgtttttactacttttctttgcatttgaagacaaataagttgagagatagatgatttgtcaatggtttaaggaacatattgtattgttttcactcgagcc 18898055  T
Q  359 gttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtga 457  Q
    |||||||||| | ||| || || |  ||||||||  ||||||||||||         |||| ||||||||||||||||||| |||||||||||||| |||    
T  18898056 gttgtaattcgcttttttcatagactatgcaacttcataggtgttttg---------tagtgagaaatcatgtaaatcgacaaatcaagacatcacatga 18898146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 309 - 472
Target Start/End: Original strand, 19601813 - 19601977
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgag 407  Q
    |||||||||||  |||||||||||| | |  |||| |||| | || | | ||||||||||||||| ||||||||||||||||||| |||||| |||| ||    
T  19601813 aggagttgtcattggtttgaggaactttttctatttttttcattcaaattgttgtaattcacttttatcctaaatcatgcaactccataggtatttttag 19601912  T
Q  408 tgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
     ||||| |||| |||||||||||||||| || ||||||||||||||||||| |||  ||||||||    
T  19601913 cgttttctagtgagaaatcatgtaaatcaacaaatcaagacatcacgtgaaagatcgaggatatg 19601977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 268 - 412
Target Start/End: Complemental strand, 1676436 - 1676291
Alignment:
Q  268 tacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaatt 367  Q
    |||||||||||  |||| || ||||||||||||| || || |||||||||||| |||||||||||||||| ||| |||||| | ||||||  ||||||||    
T  1676436 tacttttctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaacatattgtaatgttttcattcgagtttttgtaatt 1676337  T
Q  368 c-actttatcctaaatcatgcaactctataggtgttttgagtgttt 412  Q
    | | ||||||||| |||||||||||| |||| |||||| |||||||    
T  1676336 caattttatcctatatcatgcaactccatagttgttttcagtgttt 1676291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 268 - 412
Target Start/End: Complemental strand, 1682964 - 1682819
Alignment:
Q  268 tacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaatt 367  Q
    |||||||||||  |||| || ||||||||||||| || || |||||||||||| |||||||||||||||| ||| |||||| | ||||||  ||||||||    
T  1682964 tacttttctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaacatattgtaatgttttcattcgagtttttgtaatt 1682865  T
Q  368 c-actttatcctaaatcatgcaactctataggtgttttgagtgttt 412  Q
    | | ||||||||| |||||||||||| |||| |||||| |||||||    
T  1682864 caattttatcctatatcatgcaactccatagttgttttcagtgttt 1682819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 250 - 386
Target Start/End: Complemental strand, 5906879 - 5906742
Alignment:
Q  250 tttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgttttt 349  Q
    ||||| ||||||||||| ||||||| |||| |||| || ||||| ||||||||||||| |||| ||||||| ||||||||||||||||  |||||||||     
T  5906879 tttttgctatgtttttagtacttttatttgcatttgaagacaaacaagatgagagttagaggaattgtcaatggtttgaggaacatattatattgttttc 5906780  T
Q  350 actcgagtcgttgtaattcac-tttatcctaaatcatg 386  Q
    ||||||||| ||  ||||||| ||||||| ||||||||    
T  5906779 actcgagtcattacaattcacttttatcccaaatcatg 5906742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 228 - 469
Target Start/End: Complemental strand, 10320400 - 10320159
Alignment:
Q  228 atgacagagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttg 327  Q
    |||| ||||||||| ||| || ||||  ||||||||||| || ||||||||  |||| || | ||| ||| | || | || | ||||||| ||  ||| |    
T  10320400 atgatagagcatcatatgacatttttcgctatgtttttagtaattttctttccatttgaagataaaaaagtttagcggtagacgagttgttaatagttag 10320301  T
Q  328 aggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatc 426  Q
    || ||||||| ||||| |||| ||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||| ||  |||| |||| |||||||    
T  10320300 agaaacatattgtattcttttcactcgagtcgttgtaattcacttttatcctagaccatgcaactccataggtgttttaagctttttgtagtgagaaatc 10320201  T
Q  427 atgtaaatcgacgaatcaagacatcacgtgaaggattaaggat 469  Q
    | |||||| ||| |||| |||||| || |||||||| ||||||    
T  10320200 aggtaaattgacaaatc-agacataacatgaaggatcaaggat 10320159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 229 - 373
Target Start/End: Complemental strand, 12111510 - 12111367
Alignment:
Q  229 tgacagagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttga 328  Q
    ||||||||||||| ||| || |||||  |||||||||| ||||||| |||| |||| || ||||| ||||||||| | | |||||||||||| |||||||    
T  12111510 tgacagagcatcatatgacattttttgttatgtttttagtacttttatttgcatttgaagacaaa-aagatgagaat-agaggagttgtcaatggtttga 12111413  T
Q  329 ggaacatatcgtattgttttt-actcgagtcgttgtaattcacttt 373  Q
    ||||||||| ||||| ||||| || |||||||||||||||||||||    
T  12111412 ggaacatattgtattttttttcacacgagtcgttgtaattcacttt 12111367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 309 - 472
Target Start/End: Original strand, 9288225 - 9288388
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgag 407  Q
    ||||||| |||| ||||||||||||| || |||||||||| | | ||||| || ||||||| ||| ||| ||||||||| | ||| ||| || |||| ||    
T  9288225 aggagttttcaatggtttgaggaacaaattgtattgttttcatttgagtcattataattcatttttatcataaatcatgtacctccatatgtttttttag 9288324  T
Q  408 tgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    | |||| |||| ||||||||||||||||| | || |||||||||| ||||||||| |||||||||    
T  9288325 tctttt-tagtgagaaatcatgtaaatcggcaaaacaagacatcaagtgaaggatcaaggatatg 9288388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 371 - 471
Target Start/End: Original strand, 5676277 - 5676377
Alignment:
Q  371 tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggata 470  Q
    ||||||||||||  |||||||| ||||||||||||||| |||| |||| |  |||||||||||| ||  |||||||||||||| |||||||| |||||||    
T  5676277 tttatcctaaattgtgcaactccataggtgttttgagtattttttagtgatgaatcatgtaaattgataaatcaagacatcacatgaaggatcaaggata 5676376  T
Q  471 t 471  Q
    |    
T  5676377 t 5676377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 378 - 470
Target Start/End: Original strand, 13064511 - 13064602
Alignment:
Q  378 taaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggata 470  Q
    |||||||||||| | ||||||||||||||||  ||| |||| ||||||||||||||| | | ||||||||||||||||||||||| |||||||    
T  13064511 taaatcatgcaattttataggtgttttgagtcattt-tagtaagaaatcatgtaaattggcaaatcaagacatcacgtgaaggatcaaggata 13064602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 255 - 472
Target Start/End: Original strand, 46647157 - 46647373
Alignment:
Q  255 actatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcg 354  Q
    ||||||||||||||  |||||||||||||| ||   ||||||||  | | ||| || ||||||||| ||||| | ||| || | |||||||||| | ||     
T  46647157 actatgtttttaattattttctttgtatttgaaggaaaataagagaaaatttagagaagttgtcaatggtttcaagaatattttgtattgttttcattct 46647256  T
Q  355 agtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcac 453  Q
    ||||| ||||||||||||| ||||||||||||||||||| ||| |||  ||||||  ||| ||   ||||||||| ||||||  | || |||||||||||    
T  46647257 agtcggtgtaattcacttttatcctaaatcatgcaactccataagtg--ttgagttatttttatcgagaaatcatataaatcagcaaaacaagacatcac 46647354  T
Q  454 gtgaaggattaaggatatg 472  Q
    |||| |||| || ||||||    
T  46647355 gtgagggatcaaagatatg 46647373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 366 - 472
Target Start/End: Complemental strand, 31859942 - 31859837
Alignment:
Q  366 ttcactttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaa 465  Q
    |||| |||||||||||||||||||||  ||||||||||||||| |||| |||| ||||||||||||||||  | || ||||||| || |||||||||  |    
T  31859942 ttcattttatcctaaatcatgcaactgcataggtgttttgagtctttt-tagtgagaaatcatgtaaatcagcaaaacaagacaccaggtgaaggatcga 31859844  T
Q  466 ggatatg 472  Q
    |||||||    
T  31859843 ggatatg 31859837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 312 - 472
Target Start/End: Original strand, 10576471 - 10576631
Alignment:
Q  312 agttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgt 410  Q
    ||||||| | ||||||| |||||| | |||||||||| | ||||||| ||||||||||| ||||| |||||| || |||||  ||||||||||||| |      
T  10576471 agttgtccatggtttgaagaacattttgtattgttttcattcgagtcattgtaattcacttttattctaaattatacaacttcataggtgttttga-ttc 10576569  T
Q  411 tttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||| |||| |||||| ||||||||||   || |||||||||| |||||||||  ||||||||    
T  10576570 tttctagtgagaaattatgtaaatcggaaaaacaagacatcatgtgaaggatcgaggatatg 10576631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 371 - 472
Target Start/End: Original strand, 29437549 - 29437649
Alignment:
Q  371 tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggata 470  Q
    |||||||||||||||||||||  |||| |||||||||| |||| || | ||||||||||||||||| | |  ||||||||||||||||||||  ||||||    
T  29437549 tttatcctaaatcatgcaacttcatagctgttttgagtctttt-taatgagaaatcatgtaaatcggcaagacaagacatcacgtgaaggatcgaggata 29437647  T
Q  471 tg 472  Q
    ||    
T  29437648 tg 29437649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 413
Target Start/End: Complemental strand, 13275831 - 13275739
Alignment:
Q  322 ggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgtttt 413  Q
    |||||||| ||||| | |||||||||| | |||||||||| ||||||||||| |||| ||||||| ||||||| |||||||||||||| ||||    
T  13275831 ggtttgagaaacatgttgtattgttttcattcgagtcgttataattcactttcatcccaaatcatacaactctgtaggtgttttgagtctttt 13275739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 427
Target Start/End: Original strand, 22119608 - 22119779
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    ||||||||||| |  ||||||||| |||| ||  ||||| ||| |  | |||||||||||||||| ||||||||||||| || ||| ||||||   ||||    
T  22119608 ctatgtttttagttattttctttgcatttgaaggcaaattagaagttatttataggagttgtcaatggtttgaggaacaaattgtaatgttttcgttcga 22119707  T
Q  356 gtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatca 427  Q
    ||| |||||||| || |||| || |||||||||||||  |||||| |||||||| |||| |||| ||||||||    
T  22119708 gtcattgtaatttacttttacccaaaatcatgcaactacataggtattttgagtctttt-tagtgagaaatca 22119779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 472
Target Start/End: Original strand, 26159767 - 26159934
Alignment:
Q  305 ttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgcaactctataggtgttt 403  Q
    ||||| ||||||||||  |||| || ||||| | |||||||||| | |||||||||||||||| |  ||| |||||||| || |||||  ||| ||||||    
T  26159767 ttataagagttgtcaatagtttaagaaacattttgtattgttttcattcgagtcgttgtaatttagttttgtcctaaattatccaacttcatatgtgttt 26159866  T
Q  404 tgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||||| |||| |||| | |||||||||| |||  | || |||||||||| |||||||||| ||||||||    
T  26159867 tgagtctttt-tagtgaaaaatcatgtagatcagcaaaacaagacatcatgtgaaggattcaggatatg 26159934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 262 - 353
Target Start/End: Original strand, 4953650 - 4953741
Alignment:
Q  262 ttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactc 353  Q
    ||||| || |||||||||||||| || | |||||||||| ||| || ||||||||| || |||||||||||||||| |||||||||| ||||    
T  4953650 ttttagtatttttctttgtatttgaagagaaataagatgtgagataaaggagttgttaatggtttgaggaacatattgtattgttttcactc 4953741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 468
Target Start/End: Complemental strand, 47024866 - 47024705
Alignment:
Q  299 tgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctatag 397  Q
    |||||| || || ||||||||| |||||||  || |||| |||||||||| ||||||| |||| |||||||| ||||||||| |||||||||||  |  |    
T  47024866 tgagagatagagtagttgtcaatggtttgaaaaatatattgtattgttttcactcgagccgttctaattcacttttatcctagatcatgcaacttcaatg 47024767  T
Q  398 gtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaagga 468  Q
    ||||||||         |||| ||||||||||||||||||  |||||||||||| | |||||||| |||||    
T  47024766 gtgttttg---------tagtgagaaatcatgtaaatcgaaaaatcaagacatcgcatgaaggatcaagga 47024705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 436
Target Start/End: Original strand, 21167744 - 21167871
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgag 407  Q
    |||||||||| | | ||| |||||||| | |||||||||| | |||||| ||||||||| ||||| ||||||||  ||| ||||  ||||||||||||||    
T  21167744 aggagttgtccatgttttaaggaacattttgtattgttttcattcgagttgttgtaatttacttttatcctaaaatatgtaacttcataggtgttttgag 21167843  T
Q  408 tgttttatagtcagaaatcatgtaaatcg 436  Q
      |||| |||| |||||||||||||||||    
T  21167844 actttt-tagtgagaaatcatgtaaatcg 21167871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 396 - 462
Target Start/End: Complemental strand, 12111337 - 12111272
Alignment:
Q  396 aggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggat 462  Q
    |||||||||||||||||| |||| |||| || ||||||||||| ||||||| |||||||||||||||    
T  12111337 aggtgttttgagtgttttgtagtgagaa-tcttgtaaatcgacaaatcaagtcatcacgtgaaggat 12111272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 333
Target Start/End: Complemental strand, 25050218 - 25050141
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaac 333  Q
    ||||||||||| || |||| ||||||||| || ||||||||||||| ||||| || | || |||||||||||||||||    
T  25050218 ctatgtttttagtatttttatttgtatttgaagacaaataagatgaaagttagagaaattatcaacggtttgaggaac 25050141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 472
Target Start/End: Original strand, 33519108 - 33519208
Alignment:
Q  371 tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggata 470  Q
    |||||| ||||||||||||||   |||||||||||||| |||| |||| ||||||||||| ||||| | |||||| ||||| | ||||| ||| ||||||    
T  33519108 tttatcttaaatcatgcaacttcgtaggtgttttgagtctttt-tagtgagaaatcatgtgaatcggcaaatcaaaacatctcttgaagaattgaggata 33519206  T
Q  471 tg 472  Q
    ||    
T  33519207 tg 33519208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 461
Target Start/End: Original strand, 23353646 - 23353789
Alignment:
Q  317 tcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcactttatcctaaatcatgcaactctataggtgttttgagtgttttata 416  Q
    |||| ||||| |||||| | | |||||||||| | |||||||||||||||||| |||    |||||| ||||  |  ||  ||||||||||| |||| ||    
T  23353646 tcaatggtttaaggaactttttgtattgttttcattcgagtcgttgtaattcaattttatataaatcgtgcacattcatgagtgttttgagtctttt-ta 23353744  T
Q  417 gtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaagga 461  Q
    || ||||||||||||||||| | || ||||||||||| |||||||    
T  23353745 gtgagaaatcatgtaaatcggcaaaacaagacatcacatgaagga 23353789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 322 - 412
Target Start/End: Complemental strand, 1695934 - 1695843
Alignment:
Q  322 ggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttt 412  Q
    ||||| |||||||||| |||||| ||||| | ||||| |||||||||| ||| |||||| |||||||||||| |||| | ||||||| ||||    
T  1695934 ggtttcaggaacatattgtattggttttatttgagtctttgtaattcaattttatcctagatcatgcaactccatagttattttgagggttt 1695843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 472
Target Start/End: Original strand, 17187253 - 17187351
Alignment:
Q  371 tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggata 470  Q
    |||||||||||||||||||||  |||||||  |||||| |||| |||| | ||||||||||||||||| ||  || |||||| ||||| |||| ||||||    
T  17187253 tttatcctaaatcatgcaacttcataggtg--ttgagtctttt-tagtgataaatcatgtaaatcgacaaaataacacatcaagtgaatgattgaggata 17187349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 391
Target Start/End: Original strand, 24925767 - 24925903
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    ||||||||||| |  |||| ||||||||| || | |||||||| |  | ||| | ||||||||||  ||||||| ||||| | |||||||||| | | ||    
T  24925767 ctatgtttttagttattttatttgtatttgaagataaataagaagtcatttaaaagagttgtcaatcgtttgagtaacattttgtattgttttcatttga 24925866  T
Q  356 gtcgttgtaattcac-tttatcctaaatcatgcaact 391  Q
    |||| |||||||||| |||||| ||||||||| ||||    
T  24925867 gtcgctgtaattcacttttatcataaatcatgtaact 24925903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 326
Target Start/End: Complemental strand, 1696715 - 1696652
Alignment:
Q  263 tttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggttt 326  Q
    |||| ||||||| |||  |||| || |||||||||||||||| ||||||||||||||| |||||    
T  1696715 tttagtacttttatttacatttgaagacaaataagatgagagatataggagttgtcaatggttt 1696652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 406
Target Start/End: Complemental strand, 17339966 - 17339815
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    |||||||||||||  |||| |||  |||| ||  ||||||||| || | ||| ||||||| || | || ||||||||||| | ||||  |||| | || |    
T  17339966 ctatgtttttaattattttatttacatttaaaggcaaataagaggacatttagaggagttatccatggattgaggaacattttgtatctttttcattcta 17339867  T
Q  356 gtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttga 406  Q
    ||| |||||||||| ||| |||||||||||||||| |  |||||||||||||    
T  17339866 gtctttgtaattcaattttatcctaaatcatgcaatttcataggtgttttga 17339815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 434
Target Start/End: Original strand, 21077248 - 21077373
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattc-actttatcctaaatcatgcaactctataggtgttttgag 407  Q
    |||||||||||| |||||||| ||| | | ||||| |||||| ||||||||||||| ||| | ||||||  |||||||  || || |||||||||||  |    
T  21077248 aggagttgtcaatggtttgagaaaccttttgtattatttttattcgagtcgttgtagttcaattttatcacaaatcatcaaattccataggtgtttttgg 21077347  T
Q  408 tgttttatagtcagaaatcatgtaaat 434  Q
    | |||| |||| | |||||||||||||    
T  21077348 tctttt-tagtgaaaaatcatgtaaat 21077373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 38)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 225 - 472
Target Start/End: Complemental strand, 16052461 - 16052213
Alignment:
Q  225 gtgatgacagagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggt 324  Q
    |||||||| |||||||| |||  | ||||  ||||||||||| ||||||| |||| |||| |  |||||||| |||||||||| |||||||||||| |||    
T  16052461 gtgatgacggagcatcatatgatatttttggctatgtttttagtacttttatttgcatttgaggacaaataaaatgagagttagaggagttgtcaatggt 16052362  T
Q  325 ttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaa 423  Q
    ||||  |||||||  || |||||| |||||||||||| |||||||| |||| | ||||||||||||||| |||||||||||||||||||| |||| ||||    
T  16052361 ttgaataacatattttaatgttttcactcgagtcgttataattcacatttaccttaaatcatgcaactcaataggtgttttgagtgttttgtagtgagaa 16052262  T
Q  424 atcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||||| |||||| || |||||||||||||| |||||||| |||||||||    
T  16052261 atcatctaaatcaacaaatcaagacatcacatgaaggataaaggatatg 16052213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 256 - 472
Target Start/End: Original strand, 32239249 - 32239466
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    |||||||||||  ||||||||||  |||| || | | ||||||| | | ||| |||||||||||| |||||||| ||||||| |||||||||||||| ||    
T  32239249 ctatgtttttagcacttttctttacatttgaagatagataagataataattagaggagttgtcaatggtttgagtaacatattgtattgtttttacttga 32239348  T
Q  356 gtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacg 454  Q
    ||||||| |||||||||| ||| ||||||||||||||| |||  ||||||||||||||| |||| ||||||| ||||||| ||| |||| |||||||||     
T  32239349 gtcgttgcaattcacttttatcttaaatcatgcaactccataaatgttttgagtgttttgtagtgagaaatcgtgtaaattgacaaatcgagacatcaca 32239448  T
Q  455 tgaaggattaaggatatg 472  Q
    |||||||| |||||||||    
T  32239449 tgaaggataaaggatatg 32239466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 256 - 405
Target Start/End: Original strand, 12956451 - 12956601
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    ||||||||||| |||||||||||| |||| || | ||||||||||||||||| |||||||||||| ||||||||||| |||| |||||||||| ||||||    
T  12956451 ctatgtttttagtacttttctttgcatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaaaatattgtattgttttcactcga 12956550  T
Q  356 gtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttg 405  Q
    ||| | ||||||||| |||||||||||||||| ||||||||||||||||||    
T  12956551 gtcatcgtaattcacttttatcctaaatcatgtaactctataggtgttttg 12956601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 250 - 392
Target Start/End: Complemental strand, 14977266 - 14977122
Alignment:
Q  250 tttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgttttt 349  Q
    |||| ||||||||||||  ||||||||||| |||| || ||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||    
T  14977266 ttttaactatgtttttagcacttttctttgcattttaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtattgttttt 14977167  T
Q  350 -actcgagtcgttgtaattcac-tttatcctaaatcatgcaactc 392  Q
     ||||||||| ||||||||||| ||||||||||||||||||||||    
T  14977166 cactcgagtcattgtaattcacttttatcctaaatcatgcaactc 14977122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 224 - 467
Target Start/End: Original strand, 16054224 - 16054468
Alignment:
Q  224 agtgatgacagagcatcacatgccactttttactatgtttttaatactttt-ctttgtatttcaaaacaaataagatgagagttataggagttgtcaacg 322  Q
    |||||||||||||||||| ||| || ||||  |||||| |||| ||||||| ||||| |||| || ||||||||||| ||||||| |||||||||||| |    
T  16054224 agtgatgacagagcatcatatgaca-ttttggctatgtctttagtactttttctttgcatttgaagacaaataagataagagttagaggagttgtcaatg 16054322  T
Q  323 gtttgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcag 421  Q
     ||| |||||||| | |||||||||| |||||||| |||||||||||  ||||||||| |||||  ||||| |||| |||||||| |||||| |||| ||    
T  16054323 atttaaggaacattttgtattgttttcactcgagttgttgtaattcatttttatcctagatcataaaactccatagatgttttgattgttttgtagtgag 16054422  T
Q  422 aaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaagg 467  Q
     |||||||||||||    | ||||||||||| ||||||||| ||||    
T  16054423 gaatcatgtaaatcattaattcaagacatcatgtgaaggatcaagg 16054468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 250 - 471
Target Start/End: Original strand, 24120187 - 24120401
Alignment:
Q  250 tttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgttttt 349  Q
    ||||| ||||||||||| |||||||||||| |||| || | ||||||||||||||||| |||||||||||||||||||||||| |||| ||||| |||||    
T  24120187 tttttgctatgtttttagtacttttctttgcatttgaagagaaataagatgagagttagaggagttgtcaacggtttgaggaatatattgtatttttttt 24120286  T
Q  350 -actcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaaga 447  Q
     || | | |||||||| || || |||||||||||| ||||||||| || |         |||||||||| | || ||||||| |||||||| ||||||||    
T  24120287 cacccaattcgttgtagttaacttttatcctaaataatgcaactccattg---------gtgttttataatgaggaatcatgcaaatcgaccaatcaaga 24120377  T
Q  448 catcacgtgaaggattaaggatat 471  Q
    ||||| ||||||||| ||||||||    
T  24120378 catcatgtgaaggatcaaggatat 24120401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 291 - 456
Target Start/End: Complemental strand, 5570259 - 5570093
Alignment:
Q  291 aaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaa 389  Q
    ||||||||||||| ||  ||||||||||||   |||||||||||||| |||||||||| |||||||| |||||||||||| ||||||||| |||||||||    
T  5570259 aaataagatgagatttgaaggagttgtcaatactttgaggaacatattgtattgttttcactcgagttgttgtaattcacttttatcctatatcatgcaa 5570160  T
Q  390 ctctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtg 456  Q
    ||   ||||||||||||||||||| |||| |   || |||||||||||| |||| ||||||||||||    
T  5570159 cttcgtaggtgttttgagtgttttctagtgatgcattatgtaaatcgacaaatcgagacatcacgtg 5570093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 256 - 405
Target Start/End: Complemental strand, 28901493 - 28901343
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    ||||| |||||||||||||||||| |||| || ||||||||| |||||| || |||||||||||| |||||||||||||||| |||||||||| ||||||    
T  28901493 ctatgcttttaatacttttctttgcatttgaatacaaataagttgagagatagaggagttgtcaatggtttgaggaacatattgtattgttttcactcga 28901394  T
Q  356 gtcgttgtaattc-actttatcctaaatcatgcaactctataggtgttttg 405  Q
    |||||||||||||   ||||||||| || |||||||||  ||| |||||||    
T  28901393 gtcgttgtaattcgtttttatcctagataatgcaactccttagatgttttg 28901343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 261 - 471
Target Start/End: Original strand, 28902056 - 28902267
Alignment:
Q  261 tttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgt 360  Q
    |||||| ||||||| |||| ||||  |  ||| |||||||| || || ||||||| | || |||||||| ||||||| |||||||||| | |||||||||    
T  28902056 tttttagtacttttatttgcatttataggcaagtaagatgatagatagaggagttattaatggtttgagaaacatattgtattgttttcattcgagtcgt 28902155  T
Q  361 tgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaag 459  Q
    |||||||||| ||||||||| | || |||| || ||| ||||||| |||||||  |||| |||||||||||||||| || |||| |||||||||||||||    
T  28902156 tgtaattcacttttatcctataccacgcaaatccataagtgtttttagtgtttagtagtgagaaatcatgtaaatcaacaaatcgagacatcacgtgaag 28902255  T
Q  460 gattaaggatat 471  Q
    ||| || |||||    
T  28902256 gatcaatgatat 28902267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 271 - 469
Target Start/End: Complemental strand, 29047454 - 29047258
Alignment:
Q  271 ttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac 370  Q
    ||||||||| |||| |||||||||||||||||||||| |||||||||||| |||   ||||||| || |||||||||| |||||||||  |||||||||     
T  29047454 ttttctttgcatttgaaaacaaataagatgagagttagaggagttgtcaatggt---aggaacacattgtattgttttcactcgagtcactgtaattcaa 29047358  T
Q  371 ttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggat 469  Q
    ||| ||  |  |||||||||||| |||  ||||||||||||||| |||| || |||||||||||||    | ||||||||||| ||||||||| ||||||    
T  29047357 ttttataatggatcatgcaactccatatatgttttgagtgttttgtagtgaggaatcatgtaaatcataaattcaagacatcatgtgaaggatcaaggat 29047258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 257 - 462
Target Start/End: Complemental strand, 13082090 - 13081880
Alignment:
Q  257 tatgtttttaatactttt-ctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    |||||||||| ||||||| ||||| |||| || ||||||||||||||||||| |||||||||||| | |||||| ||||  | ||| |||||| ||||||    
T  13082090 tatgtttttagtactttttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatgatttgagaaacacgttgtagtgttttcactcga 13081991  T
Q  356 gtcgttgtaattcactt-tatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaa---tcatgtaaatcgacgaatcaagacatc 451  Q
    || ||||||||||| || ||||||| |||||||||||  |||||||||||||| ||||| |||| || ||   |||||||||||  | ||| || |||||    
T  13081990 gtagttgtaattcagttgtatcctagatcatgcaacttcataggtgttttgagagttttgtagtgaggaatattcatgtaaatcatcaaattaatacatc 13081891  T
Q  452 acgtgaaggat 462  Q
    | |||||||||    
T  13081890 atgtgaaggat 13081880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 309 - 472
Target Start/End: Complemental strand, 24584824 - 24584661
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgag 407  Q
    ||||||||||| ||||||||||||  | | |||||||||| | ||||||| |||||||||| ||| ||| |||||||||||||||||||||| |||||||    
T  24584824 aggagttgtcatcggtttgaggaattttttgtattgttttcattcgagtcattgtaattcatttttatcataaatcatgcaactctataggtattttgag 24584725  T
Q  408 tgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    | |||| |||| ||||||| ||||||| ||| |||||||||||||| |||| ||| | |||||||    
T  24584724 ttttttgtagtgagaaatcttgtaaattgac-aatcaagacatcacatgaaagatcatggatatg 24584661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 225 - 471
Target Start/End: Complemental strand, 22894718 - 22894468
Alignment:
Q  225 gtgatgacagagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttatagga----gttgtcaa 320  Q
    ||||||||||||||||| ||| || ||||   |||||||||| |||||||||| | |||| ||  |||||||| |||||| || || |    ||||||||    
T  22894718 gtgatgacagagcatcatatgacatttttaggtatgtttttagtacttttcttcgcatttgaagccaaataagttgagagatagagaactaagttgtcaa 22894619  T
Q  321 cggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtc 419  Q
     ||||||||| |||||| ||||| |||  |||||| || |||| ||||||||| ||| || ||||| |||||| |||||| |||| |||||| ||||||     
T  22894618 tggtttgaggtacatattgtattctttacactcgaatcattgtgattcacttttatcttagatcattcaactccataggtatttttagtgttctatagtg 22894519  T
Q  420 agaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatat 471  Q
    ||||||||||||||||||  |||||||| ||||| |||||||| || |||||    
T  22894518 agaaatcatgtaaatcga-aaatcaagatatcacatgaaggatcaatgatat 22894468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 309 - 472
Target Start/End: Complemental strand, 35135522 - 35135357
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgcaactctataggtgttttgag 407  Q
    |||||||||||| ||||| ||| |||| | |||||||||||||||||||| ||||||||||  |||||||||||||||||||||| | | ||||||||||    
T  35135522 aggagttgtcaaaggttttaggtacattttgtattgtttttactcgagtcattgtaattcatttttatcctaaatcatgcaactccacatgtgttttgag 35135423  T
Q  408 tgttttatagt-cagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    | |||| |  |  |||||||| |||||||||| || |||||||||||||| |||||| ||| ||||    
T  35135422 tctttttttttggagaaatcaggtaaatcgacaaaacaagacatcacgtggaggattgagggtatg 35135357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 351 - 472
Target Start/End: Original strand, 24696638 - 24696760
Alignment:
Q  351 ctcgagtcgttgtaattcactt-tatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagaca 449  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |  | ||||||||| ||||||||||||| |||||||||||||||| || ||||||||||    
T  24696638 ctcgagtcgttgtaatttacttctatcctaaatcatacaatttcacaggtgtttttagtgttttatagtaagaaatcatgtaaatcaacaaatcaagaca 24696737  T
Q  450 tcacgtgaaggattaaggatatg 472  Q
    |||| | |||||| |||||||||    
T  24696738 tcacataaaggatcaaggatatg 24696760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 309 - 463
Target Start/End: Complemental strand, 27097901 - 27097745
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgag 407  Q
    |||| ||||||| |||||||||||||| | | |||||||| | | |||||||||||||||| ||| ||| ||||||||||||||  ||||||||||  ||    
T  27097901 aggaattgtcaatggtttgaggaacatgttgcattgttttcatttgagtcgttgtaattcagttttatcataaatcatgcaacttcataggtgtttaaag 27097802  T
Q  408 tgttttat-agtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggatt 463  Q
    | |||| | ||| ||||||||||||||||| | || ||||||||||||||| |||||    
T  27097801 tctttttttagtgagaaatcatgtaaatcggcaaaacaagacatcacgtgatggatt 27097745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 289 - 451
Target Start/End: Original strand, 26882403 - 26882566
Alignment:
Q  289 acaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgc 387  Q
    |||||||| |||||| ||| |||||||| ||| ||||| |||| ||||  |||||||||| ||||||||| |  ||||  | ||| |||||| |||||||    
T  26882403 acaaataaaatgagatttaaaggagttgccaatggtttaaggagcataatgtattgttttcactcgagtcatcataatatagttttatcctagatcatgc 26882502  T
Q  388 aactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatc 451  Q
    ||||| ||||||||||||| |||||| |||| || |||||||||||||  | ||||||||||||    
T  26882503 aactccataggtgttttgattgttttgtagtgaggaatcatgtaaatcatcaaatcaagacatc 26882566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 339 - 472
Target Start/End: Original strand, 30543806 - 30543939
Alignment:
Q  339 gtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcga 437  Q
    |||||||||| | | |||| ||||||||||||||| |||||||||||||||| | |||||||||||||||| |||| | || |||||||||||||||||     
T  30543806 gtattgttttcatttgagttgttgtaattcacttttatcctaaatcatgcaattatataggtgttttgagtctttt-tggtgagaaatcatgtaaatcgg 30543904  T
Q  438 cgaatcaagacatcacgtgaaggattaaggatatg 472  Q
      || ||||| ||||| ||||||||| ||||||||    
T  30543905 taaaacaagatatcacatgaaggattgaggatatg 30543939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 316 - 462
Target Start/End: Complemental strand, 14424905 - 14424759
Alignment:
Q  316 gtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgtttta 414  Q
    ||||| |||||||||||| | |  ||| ||||| | |||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| ||  ||||     
T  14424905 gtcaatggtttgaggaactttttatatggttttcattcgagtcgttgtaattcagttttatcctaaatcatgcaactccataggtgtttt-aggtttttt 14424807  T
Q  415 tagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggat 462  Q
    |||| ||||||||||||||||| | || ||||||| || | |||||||    
T  14424806 tagtgagaaatcatgtaaatcggcaaaacaagacaacaagggaaggat 14424759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 472
Target Start/End: Original strand, 28074573 - 28074691
Alignment:
Q  354 gagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatca 452  Q
    ||||||||| |||||||||| ||||||||||||||||||| |||||||||| |||| |||| |||| |||||||||||||||   | || ||||||||||    
T  28074573 gagtcgttgcaattcacttttatcctaaatcatgcaactccataggtgtttcgagtctttt-tagtgagaaatcatgtaaatatgcaaaacaagacatca 28074671  T
Q  453 cgtgaaggattaaggatatg 472  Q
      |||||||| |||||||||    
T  28074672 aatgaaggatcaaggatatg 28074691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 312 - 462
Target Start/End: Original strand, 10867006 - 10867156
Alignment:
Q  312 agttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgcaactctataggtgttttgagtgt 410  Q
    ||||||||| ||||||||||| || | |||||||||| | | ||||||||||||||||  ||||||  |||||||||||||| | ||||| ||||| | |    
T  10867006 agttgtcaatggtttgaggaatattttgtattgttttcatttgagtcgttgtaattcagttttatctcaaatcatgcaactccaaaggtgctttgaatct 10867105  T
Q  411 tttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggat 462  Q
    ||| |||| ||||||||||||| ||| | || ||||| | ||||||||||||    
T  10867106 ttt-tagtgagaaatcatgtaagtcggcaaaacaagataccacgtgaaggat 10867156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 472
Target Start/End: Original strand, 29291830 - 29291948
Alignment:
Q  354 gagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatca 452  Q
    ||||||||||||| || ||| |||||||||||||||||| |||| || |||||||| |||| |||| ||||||||||||||||| | || ||||| ||||    
T  29291830 gagtcgttgtaatgcagttttatcctaaatcatgcaactttataagtattttgagtctttt-tagtaagaaatcatgtaaatcggcaaaacaagatatca 29291928  T
Q  453 cgtgaaggattaaggatatg 472  Q
    ||||||| ||  ||||||||    
T  29291929 cgtgaagaatcgaggatatg 29291948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 472
Target Start/End: Original strand, 5153803 - 5153936
Alignment:
Q  339 gtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcga 437  Q
    ||||| |||| | ||||||| |||||||||| ||| ||| |||||||| |||||| ||||||||||||||| |||| |||| ||||||||||||||| |     
T  5153803 gtattattttcattcgagtcattgtaattcagttttatcttaaatcattcaactcgataggtgttttgagtctttt-tagtaagaaatcatgtaaatagg 5153901  T
Q  438 cgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    | || |||||||| | |||||||||  ||||||||    
T  5153902 caaaacaagacataaagtgaaggatcgaggatatg 5153936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 355 - 471
Target Start/End: Complemental strand, 28260343 - 28260227
Alignment:
Q  355 agtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcac 453  Q
    ||||||||||||| |  ||||||||||||||||  |||| ||||||||||||||| |||| |||| ||||||||||||||||  | || |||||||||||    
T  28260343 agtcgttgtaatttaggtttatcctaaatcatgagactccataggtgttttgagtctttt-tagtgagaaatcatgtaaatcagcaaaacaagacatcac 28260245  T
Q  454 gtgaaggattaaggatat 471  Q
    ||| ||||| ||| ||||    
T  28260244 gtggaggatcaagtatat 28260227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 372 - 471
Target Start/End: Complemental strand, 28859275 - 28859176
Alignment:
Q  372 ttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatat 471  Q
    ||||||||||||| ||||| | ||| |||||||||| ||||| |||| ||||||||||||||| ||| || | | ||||||| |||||||| ||||||||    
T  28859275 ttatcctaaatcacgcaacaccatatgtgttttgagggttttgtagtaagaaatcatgtaaatggacaaacctaaacatcacatgaaggatcaaggatat 28859176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 450
Target Start/End: Original strand, 31436475 - 31436635
Alignment:
Q  290 caaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgca 388  Q
    |||||||||||  | ||| |||||||||||| | ||||||||| | |   |||| |||| | |||||||  ||||||| |  ||||||||||||||||||    
T  31436475 caaataagatgtaatttagaggagttgtcaatgatttgaggaataaactatatttttttcattcgagtcagtgtaatttagttttatcctaaatcatgca 31436574  T
Q  389 actctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacat 450  Q
    |||  ||||||||||||| | |||| |||| |||||||||||||||| || || ||||||||    
T  31436575 actacataggtgttttgaatctttt-tagtgagaaatcatgtaaatcaacaaaacaagacat 31436635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 342 - 472
Target Start/End: Original strand, 11437467 - 11437598
Alignment:
Q  342 ttgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacga 440  Q
    ||||||| | |||||||||| ||||||| ||| ||| ||  ||||||||||| ||| || |||||||| |||| |||| ||||||||||||||||| | |    
T  11437467 ttgttttcattcgagtcgttataattcagtttcatcataggtcatgcaactccatatgtattttgagtctttt-tagtgagaaatcatgtaaatcggcaa 11437565  T
Q  441 atcaagacatcacgtg-aaggattaaggatatg 472  Q
    | |||||||||| ||| |||||| |||||||||    
T  11437566 aacaagacatcaagtgaaaggatcaaggatatg 11437598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 363
Target Start/End: Original strand, 6358660 - 6358767
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    ||||||||||| ||||||| |||| |||| || ||| ||||| |||||| || ||||||||| || |||||| | ||||||| |||||||||| | ||||    
T  6358660 ctatgtttttagtacttttatttgcatttgaagacatataagttgagagatagaggagttgttaatggtttgggaaacatattgtattgttttcaatcga 6358759  T
Q  356 gtcgttgt 363  Q
    | ||||||    
T  6358760 gccgttgt 6358767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 472
Target Start/End: Complemental strand, 30851156 - 30851036
Alignment:
Q  352 tcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacat 450  Q
    |||| |||||||||||||  |||||||||||||||||||||| |||||||||||| |   | | |||| ||||||| ||||||||  | || ||||||||    
T  30851156 tcgaatcgttgtaattcagatttatcctaaatcatgcaactcaataggtgttttg-gatctatctagtgagaaatcgtgtaaatcatcaaagcaagacat 30851058  T
Q  451 cacgtgaaggattaaggatatg 472  Q
    |  ||||||||| |||||||||    
T  30851057 ctagtgaaggatcaaggatatg 30851036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 389
Target Start/End: Complemental strand, 11310387 - 11310223
Alignment:
Q  226 tgatgacagagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtt 325  Q
    |||| ||||||||||| |||  | ||||| ||||||||||| ||||| |||||| |||| || | ||||||| |||||| || |  | ||||||| ||||    
T  11310387 tgataacagagcatcatatgatattttttgctatgtttttagtacttatctttgcatttgaagaaaaataagttgagagatagaaaaattgtcaatggtt 11310288  T
Q  326 tgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgcaa 389  Q
    | || |||||||  | ||||||| |||| ||| ||| |||||||  ||||||||| |||||||||    
T  11310287 taagaaacatatttttttgttttcactcaagttgttataattcatttttatcctagatcatgcaa 11310223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 311 - 456
Target Start/End: Complemental strand, 6888287 - 6888145
Alignment:
Q  311 gagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcactt-tatcctaaatcatgcaactctataggtgttttgagtg 409  Q
    |||||||||| |||| ||| ||||| | ||||| |||| | | ||||| |||||||||| || ||||||||||||||||||||   |||||||||||||     
T  6888287 gagttgtcaatggttagagaaacattttgtatt-ttttcatttgagtcattgtaattcagttctatcctaaatcatgcaactc--caggtgttttgagtc 6888191  T
Q  410 ttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtg 456  Q
     ||| |||| |||||||||||||||| || || |||  |||||||||    
T  6888190 attt-tagtgagaaatcatgtaaatcaacaaaacaaaccatcacgtg 6888145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 28252533 - 28252470
Alignment:
Q  257 tatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaa 320  Q
    |||||||||||||||||| || |||||| || ||||||||||||||||||| | ||| ||||||    
T  28252533 tatgtttttaatacttttattcgtatttaaagacaaataagatgagagttagaagagatgtcaa 28252470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 472
Target Start/End: Complemental strand, 13583525 - 13583456
Alignment:
Q  402 tttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||||||| |||| |||| ||||||||||||||||||| || |||||||||| |||||||||  ||||||||    
T  13583525 tttgagtctttt-tagtgagaaatcatgtaaatcgacaaaacaagacatcaagtgaaggatcgaggatatg 13583456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 433
Target Start/End: Original strand, 31232124 - 31232193
Alignment:
Q  362 gtaattca-ctttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaa 433  Q
    |||||||| ||||||||||||||||||||||| |||||||||||| || |||| ||||  |||||||||||||    
T  31232124 gtaattcagctttatcctaaatcatgcaactccataggtgttttgcgt-ttttttagt--gaaatcatgtaaa 31232193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 12358691 - 12358742
Alignment:
Q  383 catgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatc 435  Q
    |||||||||||||||||||||||||| |||| |||| |||||| |||||||||    
T  12358691 catgcaactctataggtgttttgagtctttt-tagtgagaaattatgtaaatc 12358742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 436
Target Start/End: Complemental strand, 12774880 - 12774815
Alignment:
Q  371 tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcg 436  Q
    |||||||||||||||||||  | ||||||||||| |||  ||| |||| |||||| ||||||||||    
T  12774880 tttatcctaaatcatgcaataccataggtgtttttagtactttttagtaagaaataatgtaaatcg 12774815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 12357563 - 12357614
Alignment:
Q  383 catgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatc 435  Q
    ||||||| |||||||||||||||||| |||| |||| |||||| |||||||||    
T  12357563 catgcaattctataggtgttttgagtctttt-tagtgagaaattatgtaaatc 12357614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 472
Target Start/End: Complemental strand, 28292199 - 28292037
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgcaactctataggtgttttgag 407  Q
    |||||||||||  |||||||||||||| |  | || |||| | | |||| ||| |||||||  |||||||||| | ||||||||  | | |||||||| |    
T  28292199 aggagttgtcagtggtttgaggaacattttatgttcttttcatttgagttgttataattcagttttatcctaatttatgcaacttcacaagtgttttgtg 28292100  T
Q  408 tgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    | |||| |||| || |||||||||||||| | ||  |||||||||| ||||||||| ||||||||    
T  28292099 t-ttttttagtgag-aatcatgtaaatcgccaaaataagacatcacatgaaggattgaggatatg 28292037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 224 - 469
Target Start/End: Complemental strand, 21505324 - 21505078
Alignment:
Q  224 agtgatgacagagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacgg 323  Q
    ||||||||| |||||||| |||  | ||||  ||||||||||| || ||||||||| |||| || ||||||||||||||||||| || ||||||||| ||    
T  21505324 agtgatgacggagcatcatatgatatttttggctatgtttttagtatttttctttgcatttgaagacaaataagatgagagttagagtagttgtcaatgg 21505225  T
Q  324 tttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcaga 422  Q
    |||||||| ||||| |||||||||| ||||||||| || ||||| || |||||||||||||||||||||   ||| ||||||||||||||| |||| ||     
T  21505224 tttgaggagcatattgtattgttttcactcgagtctttataatttacttttatcctaaatcatgcaacttcttagatgttttgagtgttttgtagtgagg 21505125  T
Q  423 aatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggat 469  Q
    |||||||||||||||  ||| |||||||||| |||| ||| ||||||    
T  21505124 aatcatgtaaatcgataaattaagacatcacatgaaagatcaaggat 21505078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 289 - 473
Target Start/End: Original strand, 30998766 - 30998951
Alignment:
Q  289 acaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgc 387  Q
    ||||||||||||||||||| | |||||||||| |||||||||||||||| |||||||||| ||| ||||||||||| ||||  ||||||||| ||||| |    
T  30998766 acaaataagatgagagttagatgagttgtcaatggtttgaggaacatattgtattgttttcacttgagtcgttgtacttcagttttatcctagatcatac 30998865  T
Q  388 aactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatgt 473  Q
    ||||| |||||||||||||||||||| |||| |  | | |||||||||||| |||||||| |||| ||||||||| ||||||||||    
T  30998866 aactccataggtgttttgagtgttttgtagtgaagagtgatgtaaatcgacaaatcaagatatcaagtgaaggatcaaggatatgt 30998951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 288 - 461
Target Start/End: Original strand, 35031696 - 35031870
Alignment:
Q  288 aacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatg 386  Q
    |||| |||||||||||| || ||||||||| || |||||||||||||||| |||||||||| |||||||||||||||| | || ||||||||| ||||||    
T  35031696 aacatataagatgagagatagaggagttgttaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaacttacttttatcctagatcatg 35031795  T
Q  387 caactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaagga 461  Q
    ||| || |||||||||||||||||||| ||||||| |||||| |||||  || |||||||| ||||| |||||||    
T  35031796 caattccataggtgttttgagtgttttgtagtcaggaatcatataaatatacaaatcaagatatcacatgaagga 35031870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 226 - 469
Target Start/End: Original strand, 25473969 - 25474213
Alignment:
Q  226 tgatgacagagcatcacatgccactttttactatgtttttaatac-ttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggt 324  Q
    |||||||||||||||| ||| || ||||  ||||||||||| ||| |||| |||  |||| || ||||||||||||||||||| ||||||||||||  ||    
T  25473969 tgatgacagagcatcatatgaca-ttttggctatgtttttagtacattttattttcatttgaagacaaataagatgagagttagaggagttgtcaattgt 25474067  T
Q  325 ttgaggaacatatcgtattgtttttactcgagtcgttgtaattcact-ttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaa 423  Q
    ||||||||||||| | |||| ||| |||| || || ||||||||| | |||||||| |||||||||||| | ||||||||||| |||||| |||| || |    
T  25474068 ttgaggaacatattgaattggtttcactcaagacgctgtaattcagtattatcctagatcatgcaactccaaaggtgttttgactgttttgtagtgagga 25474167  T
Q  424 atcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggat 469  Q
    ||||||||||||  | ||||||||||||| |||||| || ||||||    
T  25474168 atcatgtaaatcatcaaatcaagacatcatgtgaagaatcaaggat 25474213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 226 - 469
Target Start/End: Original strand, 35707735 - 35707979
Alignment:
Q  226 tgatgacagagcatcacatgccactttttactatgtttttaatactttt-ctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggt 324  Q
    |||||||||||||||| ||| || |||| |||||||||||| ||||||| |||||||||| || ||||||||||||||||||| || ||||||||| |||    
T  35707735 tgatgacagagcatcatatgaca-ttttgactatgtttttagtactttttctttgtatttgaagacaaataagatgagagttagagaagttgtcaatggt 35707833  T
Q  325 ttgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaa 423  Q
    ||||| ||||| | |||||||||| ||| || | |||||||||||  ||||||||| ||    | |||  |||||||||||||||||||| |||| || |    
T  35707834 ttgagaaacatgttgtattgttttcacttgatttgttgtaattcagttttatcctagattgcacgacttcataggtgttttgagtgttttgtagtgagga 35707933  T
Q  424 atcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggat 469  Q
    ||||||||||||    ||||||||||||| |||||| || ||||||    
T  35707934 atcatgtaaatcataaaatcaagacatcatgtgaagtatcaaggat 35707979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 225 - 445
Target Start/End: Complemental strand, 28278606 - 28278386
Alignment:
Q  225 gtgatgacagagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggt 324  Q
    ||||||||||||||||| |||  | ||||| ||||||||| | |||||||||||| |||| ||  ||||||||| |||||||| |||| || |||| |||    
T  28278606 gtgatgacagagcatcatatgatattttttgctatgtttt-agtacttttctttgcatttgaaggcaaataagaagagagttagaggatttctcaatggt 28278508  T
Q  325 ttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaa 423  Q
    |||| |||||||  ||||| |||| ||| ||||||||||||||||| ||||||||| |||||||||||| |||| | |||| |||||||| | || ||||    
T  28278507 ttgaagaacatagtgtattattttcacttgagtcgttgtaattcacttttatcctagatcatgcaactccatagatattttaagtgttttgtggtaagaa 28278408  T
Q  424 atcatgtaaatcgacgaatcaa 445  Q
    | |||||||||| || ||||||    
T  28278407 agcatgtaaatcaacaaatcaa 28278386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 271 - 462
Target Start/End: Complemental strand, 16593890 - 16593696
Alignment:
Q  271 ttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaaca--tatcgtattgtttttactcgagtcgttgtaattc 368  Q
    |||| |||| |||| || ||||||||||| |||||||||||||||||||| ||||||| |||||  |||  ||||||||| |||||||| ||| ||||||    
T  16593890 ttttttttgcatttgaagacaaataagattagagttataggagttgtcaatggtttgatgaacacatattatattgttttcactcgagttgttttaattc 16593791  T
Q  369 acttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggat 462  Q
    | ||| |||||| |||||||||||| ||||||||| |||||||||| |||| |  |||||||||||||  | |||||||||||||  ||||||||    
T  16593790 agttttatcctagatcatgcaactccataggtgttctgagtgttttgtagtgaagaatcatgtaaatcatcaaatcaagacatcatttgaaggat 16593696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 306 - 468
Target Start/End: Complemental strand, 27918086 - 27917923
Alignment:
Q  306 tataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgtttt 404  Q
    ||||||||||||||  |||||||||||| |   |||||||||| | | |||||||||||||||||||| || |||||||||||||||| |||||||||||    
T  27918086 tataggagttgtcattggtttgaggaacgttgggtattgttttcatttgagtcgttgtaattcacttttatactaaatcatgcaactccataggtgtttt 27917987  T
Q  405 gagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaagga 468  Q
    || | || |||||| ||||||||||| ||||||| |||||||||||||  |||||||| |||||    
T  27917986 gactattctatagtaagaaatcatgtcaatcgacaaatcaagacatcagatgaaggatcaagga 27917923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 309 - 472
Target Start/End: Original strand, 17152168 - 17152332
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgag 407  Q
    |||||||||||| ||||||||||| || | ||||| |||| | |||||||||||||||| ||||| ||| ||| |||||||||||| || ||||||||||    
T  17152168 aggagttgtcaatggtttgaggaatattttgtattattttcattcgagtcgttgtaattaacttttatcgtaattcatgcaactctgtaagtgttttgag 17152267  T
Q  408 tgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    | |||| |||| ||||||||||||||||| | || |||||||||  ||||||||| |||||||||    
T  17152268 ttttttttagtaagaaatcatgtaaatcggcaaaacaagacatcgtgtgaaggatcaaggatatg 17152332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 371 - 472
Target Start/End: Complemental strand, 27417300 - 27417199
Alignment:
Q  371 tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggata 470  Q
    |||||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||||||||||| |||||||||||||| |||||||| || ||||    
T  27417300 tttatcctaaatcatgcaactccataggtgttttaagtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacatcacatgaaggatcaatgata 27417201  T
Q  471 tg 472  Q
    ||    
T  27417200 tg 27417199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 296 - 462
Target Start/End: Original strand, 15829136 - 15829290
Alignment:
Q  296 agatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcactttatcctaaatcatgcaactctat 395  Q
    |||||||||||| |||||||||||| ||||||||||||  || |||||||||| |||  ||||||||||| |   |||||||||||||||||||||| ||    
T  15829136 agatgagagttagaggagttgtcaatggtttgaggaacgcattgtattgttttcacttaagtcgttgtaact---tttatcctaaatcatgcaactccat 15829232  T
Q  396 aggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggat 462  Q
    | ||||||||          ||| ||||||||||||||||||| |||||||||||||||||||||||    
T  15829233 atgtgttttg---------cagtgagaaatcatgtaaatcgacaaatcaagacatcacgtgaaggat 15829290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 306 - 472
Target Start/End: Original strand, 19541049 - 19541215
Alignment:
Q  306 tataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgtttt 404  Q
    |||||||||||| || |||||||||||| | | |||||  ||| | ||||||| |||||||||| ||| ||||||||||||||||||| |||||||||||    
T  19541049 tataggagttgttaatggtttgaggaactttttgtatttatttcaatcgagtcattgtaattcagttttatcctaaatcatgcaactccataggtgtttt 19541148  T
Q  405 gagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||||  ||| |||| ||||||||||||||||| | ||  ||||||||| |||||||||  ||||||||    
T  19541149 gagt-ctttctagtgagaaatcatgtaaatcggcaaaataagacatcaagtgaaggatcgaggatatg 19541215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 257 - 469
Target Start/End: Original strand, 1733063 - 1733267
Alignment:
Q  257 tatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgag 356  Q
    |||||||||| ||||||| |||  |||| || |||||| |||||||||||| |||||||||||| |  ||||| |||| || |||||||||| | | |||    
T  1733063 tatgtttttagtactttttttttcatttgaagacaaatgagatgagagttagaggagttgtcaatgagttgagaaacaaattgtattgttttcatttgag 1733162  T
Q  357 tcgttgtaattca-ctttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgt 455  Q
    |||||||||||||  ||||||||| | |||| |||| |||||||||||||         |||| || |||||||||||||  | || |||||||||||||    
T  1733163 tcgttgtaattcagttttatcctagagcatgaaactatataggtgttttg---------tagtgaggaatcatgtaaatcatcaaagcaagacatcacgt 1733253  T
Q  456 gaaggattaaggat 469  Q
    ||||||||||||||    
T  1733254 gaaggattaaggat 1733267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 250 - 469
Target Start/End: Complemental strand, 19949714 - 19949493
Alignment:
Q  250 tttttactatgtttttaatactttt-ctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttt 348  Q
    ||||| ||||||||||| ||||||| |||||||||| || | |||||| ||||||| |  ||||||||| ||  ||||||||||||||| ||||| ||||    
T  19949714 ttttttctatgtttttagtactttttctttgtatttgaagataaataacatgagagattgaggagttgttaatagtttgaggaacatattgtattatttt 19949615  T
Q  349 tactcgagtcgttgtaat-tcactttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaaga 447  Q
     ||| ||||||||||||| |   |||||  || || ||| ||||| |||||||||||||||||||| |||| || ||||||||| ||   | |||||| |    
T  19949614 cacttgagtcgttgtaatatagttttattatagataatgaaactccataggtgttttgagtgttttgtagtaaggaatcatgtagattatcaaatcaaaa 19949515  T
Q  448 catcacgtgaaggattaaggat 469  Q
    ||||| ||||||||| ||||||    
T  19949514 catcatgtgaaggatcaaggat 19949493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 322 - 467
Target Start/End: Original strand, 39730475 - 39730620
Alignment:
Q  322 ggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtca 420  Q
    ||||| |||||||| |  ||| ||||||| || ||||||||||||||||||| ||||||||||||||||||||  ||||||||||||| |||| |||| |    
T  39730475 ggtttaaggaacattttctatagtttttattcaagtcgttgtaattcacttttatcctaaatcatgcaactctgcaggtgttttgagtatttt-tagtga 39730573  T
Q  421 gaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaagg 467  Q
    |||||||| ||||||  | || ||||||||||| |||||||| ||||    
T  39730574 gaaatcatataaatcagcaaaacaagacatcacatgaaggatcaagg 39730620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 404
Target Start/End: Complemental strand, 21843139 - 21843006
Alignment:
Q  272 tttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcact 371  Q
    |||||||| |||| || ||||||||| ||  | ||| |||||||| ||| ||||| |||||||| | |||||||||| | ||||||| |||||||| |||    
T  21843139 tttctttgcatttgaagacaaataagttgtaatttagaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttact 21843040  T
Q  372 tt-atcctaaatcatgcaactctataggtgtttt 404  Q
    || |||||||||||||||||||||||||||||||    
T  21843039 tttatcctaaatcatgcaactctataggtgtttt 21843006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 305 - 462
Target Start/End: Complemental strand, 18236406 - 18236249
Alignment:
Q  305 ttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttt 403  Q
    |||||| ||||||||| |||||||| ||||  |  ||||||||| | |||||| ||| |||||||| |||||| ||||||||||||||| ||| || |||    
T  18236406 ttatagaagttgtcaatggtttgagaaacaatttatattgttttcattcgagttgttataattcacttttatcttaaatcatgcaactccataagtattt 18236307  T
Q  404 tgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggat 462  Q
    ||||| |||| |||| ||||||||||||| ||| | || ||||||||||| ||||||||    
T  18236306 tgagtctttt-tagtgagaaatcatgtaactcggcaaaacaagacatcacatgaaggat 18236249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 339 - 472
Target Start/End: Original strand, 22510991 - 22511124
Alignment:
Q  339 gtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcga 437  Q
    ||||| |||| | |||||||| ||||||| || ||||||||||||  ||||||| ||||| |||||||| |||||| |||| ||||||||||||||||||    
T  22510991 gtatttttttcattcgagtcgctgtaatttacgtttatcctaaattgtgcaactatatag-tgttttgattgttttgtagtgagaaatcatgtaaatcga 22511089  T
Q  438 cgaatcaagacatcacgtgaaggattaaggatatg 472  Q
      ||||||||||||| ||||| |||| ||||||||    
T  22511090 aaaatcaagacatcaagtgaaagattgaggatatg 22511124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 272 - 404
Target Start/End: Complemental strand, 21844766 - 21844633
Alignment:
Q  272 tttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcact 371  Q
    |||||||| |||| || ||||||||| ||  | ||| |||||||||||| ||||| |||||||| |  ||||||||| | ||||||| |||||||| |||    
T  21844766 tttctttgcatttgaagacaaataagttgtaatttagaggagttgtcaatggttttaggaacatgttatattgttttcattcgagtcattgtaatttact 21844667  T
Q  372 -ttatcctaaatcatgcaactctataggtgtttt 404  Q
     |||||||||||||||||||| || |||||||||    
T  21844666 cttatcctaaatcatgcaactttacaggtgtttt 21844633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 457
Target Start/End: Original strand, 32619604 - 32619793
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    |||| |||||| |||||||||||| |||| || ||||||||  |||||| || ||||||||| || |||| ||||||||     ||||||||| | ||||    
T  32619604 ctatatttttagtacttttctttgcatttgaagacaaataacttgagagatagaggagttgttaatggttagaggaaca----atattgttttcaatcga 32619699  T
Q  356 gtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacg 454  Q
    ||||||||||| ||||||  ||||| |||||| ||||| ||||||||||||         |||  ||||||||||||| ||||| |||||||||||||||    
T  32619700 gtcgttgtaatgcactttcgtcctagatcatgtaactccataggtgttttg---------tagcgagaaatcatgtaattcgacaaatcaagacatcacg 32619790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 322 - 472
Target Start/End: Original strand, 24187994 - 24188148
Alignment:
Q  322 ggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaat---catgcaactctataggtgttttgagtgttttatag 417  Q
    ||||| |||||| | | ||||||| || | ||||||| |||| ||||||||| |||||||||   ||| |||||| | | ||||||||||| |||| |||    
T  24187994 ggtttaaggaactttttgtattgtattcattcgagtcattgtgattcacttttatcctaaatattcattcaactccaaatgtgttttgagtattttgtag 24188093  T
Q  418 tcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    | ||||||||||||||||||| ||||||| |||||| |||||||| ||| |||||    
T  24188094 tgagaaatcatgtaaatcgaccaatcaaggcatcacatgaaggatcaagaatatg 24188148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 314 - 472
Target Start/End: Original strand, 24047402 - 24047560
Alignment:
Q  314 ttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttt 412  Q
    ||||||| ||||| |||||||| | |||||||||| | ||||||| ||||||||||| |||||||||||| ||||||||| |||||  ||||| ||  ||    
T  24047402 ttgtcaatggtttaaggaacattttgtattgttttcattcgagtcattgtaattcacttttatcctaaattatgcaactccataggcattttgggtcatt 24047501  T
Q  413 tatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    | |||| ||||||| |  |||||| | || ||||||||| | |||||||| |||||||||    
T  24047502 t-tagtgagaaatcctacaaatcggcaaaacaagacatcccatgaaggatcaaggatatg 24047560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 470
Target Start/End: Complemental strand, 21849167 - 21849012
Alignment:
Q  314 ttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttt 412  Q
    ||||||| |||||||||||||| | ||||||||||   | ||||| |||||||||| ||| ||| ||||||||||||||| |||||  |||||||| |||    
T  21849167 ttgtcaatggtttgaggaacattttgtattgttttcttt-gagtcattgtaattcagttttatcataaatcatgcaactccataggatttttgagtcttt 21849069  T
Q  413 tatagtcagaaatcatgtaaatc-gacgaatcaagacatcacgtgaaggattaaggata 470  Q
    | |||| |||||| ||||||||| || ||| ||||||||||| |||||||| |||||||    
T  21849068 t-tagtgagaaataatgtaaatcggaagaa-caagacatcacatgaaggatcaaggata 21849012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 462
Target Start/End: Complemental strand, 34063938 - 34063787
Alignment:
Q  316 gtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcact-ttatcctaaatcatgcaactctataggtgttttgagtgtttta 414  Q
    ||||| |||||| ||||| | | |||||||||| | |||||| ||||||||||||| ||||||||||||||||||||| | | ||||||||||| ||||     
T  34063938 gtcaatggtttgtggaactttttgtattgttttcattcgagttgttgtaattcactattatcctaaatcatgcaactccacaagtgttttgagttttttt 34063839  T
Q  415 t----agtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggat 462  Q
    |    ||| |||| |||||||||||| | || |||||||||  |||||||||    
T  34063838 ttttgagtgagaattcatgtaaatcggcaaaacaagacatcgtgtgaaggat 34063787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 371 - 462
Target Start/End: Complemental strand, 17415200 - 17415109
Alignment:
Q  371 tttatcctaaatcatgcaactct-ataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggat 462  Q
    |||||| ||||| |||||||||| ||||||||||||||| |||| |||| ||||||| ||||||||| | || ||||||||||||||||||||    
T  17415200 tttatcgtaaataatgcaactctcataggtgttttgagtctttt-tagtgagaaatcgtgtaaatcggcaaaacaagacatcacgtgaaggat 17415109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 470
Target Start/End: Original strand, 18818725 - 18818873
Alignment:
Q  322 ggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtca 420  Q
    ||||| |||||||| |  ||||||||| | | ||||||||| |||| | ||| ||| |||||||||||| || ||||  ||||| ||| |||| || | |    
T  18818725 ggtttaaggaacattttatattgttttcatttgagtcgttgaaatttagttttatcataaatcatgcaagtccatagacgttttcagtctttt-tattga 18818823  T
Q  421 gaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggata 470  Q
    |||||||||||||||| | || |||| |||||||||||||||||||||||    
T  18818824 gaaatcatgtaaatcggcaaaacaaggcatcacgtgaaggattaaggata 18818873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 408
Target Start/End: Complemental strand, 32276613 - 32276513
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgag 407  Q
    ||||| |||||| ||||||| |||||| | | |||||||||| ||||||| |||||||| |  ||||| ||||||||| |||||| || |||||||||||    
T  32276613 aggagatgtcaatggtttgaagaacattttgcattgtttttattcgagtcattgtaattgaagtttattctaaatcattcaactccatgggtgttttgag 32276514  T
Q  408 t 408  Q
    |    
T  32276513 t 32276513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 472
Target Start/End: Original strand, 1732656 - 1732729
Alignment:
Q  398 gtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||||||||||| |||| | || ||||||||||||||| ||| || ||||||||||| |||||||||||| |||||    
T  1732656 gtgttttgagtctttt-tggtaagaaatcatgtaaattgacaaaacaagacatcacatgaaggattaagaatatg 1732729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 472
Target Start/End: Complemental strand, 15454550 - 15454475
Alignment:
Q  396 aggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||||||||||||| |||| |||| ||||||| |||||||   | || ||||||||||| |||||||| |||||||||    
T  15454550 aggtgttttgagtttttt-tagtgagaaatcgtgtaaattagcaaaacaagacatcacatgaaggatcaaggatatg 15454475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 226 - 472
Target Start/End: Original strand, 6128 - 6374
Alignment:
Q  226 tgatgacagagcatcacatgccactttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtt 325  Q
    |||||||| ||||||| ||| || ||||  ||||||||||| |||||||||||  |||| || ||||||||||||||||||||| ||||| |||| ||||    
T  6128 tgatgacatagcatcatatggcatttttggctatgtttttagtacttttctttccatttaaacacaaataagatgagagttatatgagttttcaatggtt 6227  T
Q  326 tgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcag-aa 423  Q
    |||||||||||  ||||| |||| |||| |||| |||||||| || ||||||||| | | |||| |||   ||||||| | |||||||| || | || ||    
T  6228 tgaggaacataatgtattattttcactcaagtcattgtaatttacttttatcctagagcttgcacctc--aaggtgttataagtgttttgtattgagaaa 6325  T
Q  424 atcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  6326 atcatgtaaatcgacaaatcaagacatcacgtgaaggatcaaggatatg 6374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 250 - 472
Target Start/End: Original strand, 21353 - 21576
Alignment:
Q  250 tttttactatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgttttt 349  Q
    |||||| |||||||||| |  ||||||||| |||| || | |||||||||   ||||||| ||| | | || |||||||||||| ||| ||||||||||     
T  21353 tttttattatgtttttagtgtttttctttgcatttgaagaaaaataagatttaagttatatgagatctaaagggtttgaggaacttattgtattgttttc 21452  T
Q  350 actcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagac 448  Q
    ||||||||||||||||||||| |||||||||||||||||||||  |||  ||||||| |||||||  ||| || |||||||||||||||| || ||||||    
T  21453 actcgagtcgttgtaattcacttttatcctaaatcatgcaacttcataattgttttgggtgttttgcagtgaggaatcatgtaaatcgacaaaccaagac 21552  T
Q  449 atcacgtgaaggattaaggatatg 472  Q
    || || |||||||| || ||||||    
T  21553 attacatgaaggatcaatgatatg 21576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 257 - 462
Target Start/End: Complemental strand, 13223 - 13017
Alignment:
Q  257 tatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgag 356  Q
    |||||||||| ||||||| |||  || | || ||||||||||||||||||| |||| || |||| |||||| |||  |||| ||||| |||  || ||||    
T  13223 tatgtttttagtacttttattttcatattaagacaaataagatgagagttagaggatttttcaatggtttgtggattatattgtattctttccacacgag 13124  T
Q  357 tcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgt 455  Q
    | |||| |||||||||| ||||||||| ||||||||| | |||||||||||||||||| |||| || |||||||||||||||| |||||||||||||| |    
T  13123 ttgttggaattcacttttatcctaaattatgcaactccacaggtgttttgagtgttttgtagtgaggaatcatgtaaatcgacaaatcaagacatcacat 13024  T
Q  456 gaaggat 462  Q
    |||||||    
T  13023 gaaggat 13017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 261 - 468
Target Start/End: Complemental strand, 8857 - 8649
Alignment:
Q  261 tttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgt 360  Q
    |||||| ||||||| |||  |||| || | |||||||||||| |||| |||| ||||||| |||| |||||   ||| |||||||||| |||||| | ||    
T  8857 tttttagtacttttattttcattttaagaaaaataagatgagggttagaggatttgtcaatggttagaggattgtattgtattgttttcactcgacttgt 8758  T
Q  361 tgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaag 459  Q
     |||||||||||| |||||||||  |||||||| |||  |||||||| |||||| |||| || |||||||||||||||| ||||||||||| |  |||||    
T  8757 agtaattcacttttatcctaaattgtgcaactccatatatgttttgaatgttttgtagtgaggaatcatgtaaatcgacaaatcaagacataaaatgaag 8658  T
Q  460 gattaagga 468  Q
    ||| |||||    
T  8657 gatcaagga 8649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 256 - 472
Target Start/End: Complemental strand, 27107 - 26891
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    ||||||||||| |||||||||||| |||| || | |||||||||   ||||| | |||||||| | || ||||||| || || |||| |||||  ||| |    
T  27107 ctatgtttttagtacttttctttgcatttgaagataaataagatagaagttacaagagttgtctatggattgaggagcaaattgtat-gttttcgctcaa 27009  T
Q  356 gtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacg 454  Q
    ||| |||||||| ||||| |||||||||||| |||||  |||||||||||||||||||  |||| ||||||||||||||||||| ||| |||||||||||    
T  27008 gtcattgtaatttacttttatcctaaatcatacaactacataggtgttttgagtgtttagtagtgagaaatcatgtaaatcgacaaattaagacatcacg 26909  T
Q  455 tgaaggattaaggatatg 472  Q
    |||| ||| |||||||||    
T  26908 tgaaagatcaaggatatg 26891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 271 - 462
Target Start/End: Original strand, 15574902 - 15575093
Alignment:
Q  271 ttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac 370  Q
    ||||||||| |||| || ||||||||||||||| ||| |||| ||||||| | |||||||||||| |  ||||||||| |||| ||||||||||||| |     
T  15574902 ttttctttgcatttgaagacaaataagatgagatttagaggaattgtcaatg-tttgaggaacatgttatattgttttcactctagtcgttgtaatttag 15575000  T
Q  371 ttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggat 462  Q
    ||| | |||| |||||||||||| |||||| |||| |||||||| |||  || ||||||||||||  || |||||||||||||||||||||||    
T  15575001 ttttagcctagatcatgcaactccataggttttttaagtgttttgtagcgaggaatcatgtaaattaacaaatcaagacatcacgtgaaggat 15575093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 301 - 462
Target Start/End: Complemental strand, 17860556 - 17860394
Alignment:
Q  301 agagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggt 399  Q
    ||||||| || | ||||||| |||||||||||||| | ||||| |||| ||||||||| |||| ||| ||||| ||| ||||||||||||||| ||| ||    
T  17860556 agagttagagaatttgtcaatggtttgaggaacattttgtattattttcactcgagtcattgtcatttacttttatcttaaatcatgcaactccatacgt 17860457  T
Q  400 gttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggat 462  Q
    | |||||||||||| |||| ||||||||||||| || || ||||| |||||||||||||||||    
T  17860456 gctttgagtgttttgtagtgagaaatcatgtaattcaacaaatcaggacatcacgtgaaggat 17860394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 259 - 394
Target Start/End: Complemental strand, 13759602 - 13759465
Alignment:
Q  259 tgtttttaatacttttc-tttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagt 357  Q
    ||||||||||||||||  ||||||||| || | ||||||||||||||||| |||||||||||| |||||||||||||||| | |||||||| |||||| |    
T  13759602 tgtttttaatactttttatttgtatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaacatattgaattgttttcactcgaat 13759503  T
Q  358 cgttgtaattc-actttatcctaaatcatgcaactcta 394  Q
    ||||||||||| | ||||| ||| ||||||||||||||    
T  13759502 cgttgtaattcaattttattctatatcatgcaactcta 13759465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 257 - 472
Target Start/End: Complemental strand, 16387400 - 16387191
Alignment:
Q  257 tatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgag 356  Q
    |||||||||| || |||||||||| ||| || || |||||||||  | ||| | |||||||||| |||||||||||  ||| |||||||||||| |||||    
T  16387400 tatgtttttagtagttttctttgtgtttgaagacgaataagatgtaatttagatgagttgtcaatggtttgaggaatttattgtattgtttttattcgag 16387301  T
Q  357 tcgttgtaattca-ctttatcctaaa--tcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcac 453  Q
     |||||||||||| | ||||| ||||  |||||||||||||||         | ||||||||||| ||||||||||||||||| | ||||||||||| |     
T  16387300 ccgttgtaattcaccgttatcttaaatctcatgcaactctata---------aatgttttatagtaagaaatcatgtaaatcggcaaatcaagacattag 16387210  T
Q  454 gtgaaggattaaggatatg 472  Q
    |||| |||| |||||||||    
T  16387209 gtgagggatcaaggatatg 16387191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 405
Target Start/End: Original strand, 16527858 - 16528002
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    ||||||||||| ||||||||||||      || ||||||||||||||||||| ||||||||||   |||||||| | |||||  ||||||||| ||||||    
T  16527858 ctatgtttttagtacttttctttg------aagacaaataagatgagagttagaggagttgtcggtggtttgagtaccatattatattgttttcactcga 16527951  T
Q  356 gtcgttgtaattca-ctttatcctaaatcatgcaactctataggtgttttg 405  Q
    ||||||||||||||  ||||||||| |||||||||||  ||||||||||||    
T  16527952 gtcgttgtaattcatttttatcctagatcatgcaacttcataggtgttttg 16528002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 377 - 472
Target Start/End: Complemental strand, 24507473 - 24507378
Alignment:
Q  377 ctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    |||||||||||||||| |||||||||||||| ||||| |||| ||||||| |||||||| || |||||||||||||||||||||||| | ||||||    
T  24507473 ctaaatcatgcaactccataggtgttttgagagttttgtagtgagaaatcctgtaaatcaacaaatcaagacatcacgtgaaggattgacgatatg 24507378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 256 - 405
Target Start/End: Original strand, 30355288 - 30355437
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    ||||||||||| |||||||  ||| |||| ||   ||||||||||||||||| || ||||||||| |||||||  ||||||| ||||| |||| |||| |    
T  30355288 ctatgtttttagtacttttacttgcatttgaaggtaaataagatgagagttagagaagttgtcaatggtttgataaacatattgtatt-ttttcactcaa 30355386  T
Q  356 gtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttg 405  Q
    |||||| |||||||| |||||| |||||||||||||| |||||||||||||    
T  30355387 gtcgttttaattcacttttatcataaatcatgcaactttataggtgttttg 30355437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 472
Target Start/End: Complemental strand, 26512931 - 26512715
Alignment:
Q  255 actatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcg 354  Q
    |||||||||||| |  |||| |||| |||| ||  ||||||||| |  | ||| |||||||||||| |||||| | ||||| | |||||||||| | |||    
T  26512931 actatgtttttagttattttgtttgcatttgaaggcaaataagaggtcatttagaggagttgtcaatggtttgtgtaacattttgtattgttttcattcg 26512832  T
Q  355 agtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcac 453  Q
    | |||||||||||||| |||| |||| |||||||||| | |||| ||||||||||  ||  |||| |||||||||||||| ||| ||| ||||| | ||     
T  26512831 attcgttgtaattcacttttaacctagatcatgcaacccgatagctgttttgagt-cttcctagtgagaaatcatgtaaa-cgatgaaacaagaaaacat 26512734  T
Q  454 gtgaaggattaaggatatg 472  Q
    |||||| || |||||||||    
T  26512733 gtgaagaatcaaggatatg 26512715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 472
Target Start/End: Complemental strand, 26518047 - 26517831
Alignment:
Q  255 actatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcg 354  Q
    |||||||||||| |  |||| |||| |||| ||  ||||||||| |  | ||| |||||||||||| |||||| | ||||| | |||||||||| | |||    
T  26518047 actatgtttttagttattttgtttgcatttgaaggcaaataagaggtcatttagaggagttgtcaatggtttgtgtaacattttgtattgttttcattcg 26517948  T
Q  355 agtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcac 453  Q
    | |||||||||||||| |||| |||| |||||||||| | |||| ||||||||||  ||  |||| |||||||||||||| ||| ||| ||||| | ||     
T  26517947 attcgttgtaattcacttttaacctagatcatgcaacccgatagctgttttgagt-cttcctagtgagaaatcatgtaaa-cgatgaaacaagaaaacat 26517850  T
Q  454 gtgaaggattaaggatatg 472  Q
    |||||| || |||||||||    
T  26517849 gtgaagaatcaaggatatg 26517831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 298 - 470
Target Start/End: Original strand, 15998515 - 15998688
Alignment:
Q  298 atgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttta-tcctaaatcatgcaactctata 396  Q
    |||||||||| ||||||  || | ||||||||||| |||| ||||| ||||  || || |||||| |||| | |||  || || |||||||||||  |||    
T  15998515 atgagagttagaggagtgttccatggtttgaggaaaatattgtattcttttcccttgattcgttgaaattaagttttctcatatatcatgcaacttcata 15998614  T
Q  397 ggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggata 470  Q
    ||||||||||||||||| |||| || ||||||||||||   | ||||||||||||| ||||| ||| |||||||    
T  15998615 ggtgttttgagtgttttgtagtgaggaatcatgtaaatgaccaaatcaagacatcatgtgaatgatcaaggata 15998688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 290 - 469
Target Start/End: Complemental strand, 32930591 - 32930412
Alignment:
Q  290 caaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgca 388  Q
    |||||||||||  | ||| |||||||||||| |||||| ||||||| | || ||||||  |   |||||||| ||||||||||| ||||| || ||||||    
T  32930591 caaataagatgtcatttagaggagttgtcaatggtttgcggaacattttgttttgtttccataagagtcgttttaattcacttttatccttaaacatgca 32930492  T
Q  389 actctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggat 469  Q
    | |  |||| |||||||||| |||| |||| ||||||||||||||| | | || ||||||||||| || ||||| ||||||    
T  32930491 atttgatagatgttttgagtctttt-tagtgagaaatcatgtaaattggcaaaacaagacatcacatggaggatcaaggat 32930412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 362 - 468
Target Start/End: Complemental strand, 9396652 - 9396547
Alignment:
Q  362 gtaattca-ctttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaagg 460  Q
    |||||||| |||||| |||||||||||||||  ||| ||||||||||| |||| |||| ||||||||| ||||||| | || ||||||||||||||||||    
T  9396652 gtaattcatctttattctaaatcatgcaacttcatatgtgttttgagtctttt-tagtgagaaatcat-taaatcggcaaaacaagacatcacgtgaagg 9396555  T
Q  461 attaagga 468  Q
    || |||||    
T  9396554 atcaagga 9396547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 436
Target Start/End: Complemental strand, 9943199 - 9943122
Alignment:
Q  359 gttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcg 436  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||| ||| |||| || | |||||||||||||||||    
T  9943199 gttgtaattcacttttatcctaaatcatgcaactccataggtgtttttagtatttt-tattgagaaatcatgtaaatcg 9943122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 433
Target Start/End: Complemental strand, 14924570 - 14924393
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    ||||||||||| |  ||||||||| |||| ||  ||||||| |||  | ||| |||||||||||| |||||||||||||  |  |||  | || | ||||    
T  14924570 ctatgtttttagttattttctttgcatttgaaggcaaataatatgtaatttagaggagttgtcaatggtttgaggaacaatttatatcttattcattcga 14924471  T
Q  356 gtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaa 433  Q
    |||||||||  ||||||| || ||||||||||||| | |||||| ||||||||| ||||| ||| ||||||||||||||    
T  14924470 gtcgttgtacctcacttttattctaaatcatgcaattatataggggttttgagtctttta-agtgagaaatcatgtaaa 14924393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 355 - 472
Target Start/End: Complemental strand, 26499900 - 26499783
Alignment:
Q  355 agtcgttgtaattc-actttatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcac 453  Q
    |||||||||||||| | |||||||||||||||| || |  ||||||||| |||||||||| |||| |||||||||| |||||| | || ||||| | |||    
T  26499900 agtcgttgtaattcgattttatcctaaatcatgtaatttcataggtgttatgagtgtttt-tagtgagaaatcatgcaaatcggcaaaacaagataccac 26499802  T
Q  454 gtgaaggattaaggatatg 472  Q
    ||||| |||  ||||||||    
T  26499801 gtgaaagatcgaggatatg 26499783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 408
Target Start/End: Complemental strand, 20495946 - 20495794
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    ||||||||||| || |||||||||||||| ||  ||| ||||| |  |  || || |||| |||| |||||||||||||| | | |||||||||| | ||    
T  20495946 ctatgtttttagtaattttctttgtatttgaaggcaattaagaggtcatatagagaagttatcaatggtttgaggaacattttg-attgtttttatttga 20495848  T
Q  356 gtcgttgtaattc-actttatcctaaatcatgcaactctataggtgttttgagt 408  Q
    ||||||||||||| | |||||| ||||| ||||||||  ||| |||||||||||    
T  20495847 gtcgttgtaattcaattttatcttaaattatgcaacttcataagtgttttgagt 20495794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 472
Target Start/End: Original strand, 24617569 - 24617689
Alignment:
Q  352 tcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacat 450  Q
    ||||||||| |||||||| ||| ||||||||||||| ||||  ||  ||||||||||| |||| |||| |||||| |||||||||  | || ||||||||    
T  24617569 tcgagtcgtcgtaattcagttttatcctaaatcatgtaacttcatgagtgttttgagtctttt-tagtgagaaattatgtaaatcagcaaaacaagacat 24617667  T
Q  451 cacgtgaaggattaaggatatg 472  Q
    || ||||||| | |||||||||    
T  24617668 catgtgaagggtcaaggatatg 24617689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 435
Target Start/End: Complemental strand, 12972537 - 12972358
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcga 355  Q
    ||||||||||| |  ||||||||| |||| ||  ||| ||||| |  | ||| |||||||||||| | |||  |||| || | |||||| ||| | || |    
T  12972537 ctatgtttttagttattttctttgcatttgaaggcaactaagaggtcatttagaggagttgtcaatgttttacggaaaattttgtattgctttcattcaa 12972438  T
Q  356 gtcgttgtaattcactt-tatcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatc 435  Q
    | |||||||||||| || |||||||||||||||||||  ||| ||||||||||| |||| |||  ||||||||||||||||    
T  12972437 gacgttgtaattcagttgtatcctaaatcatgcaacttcatacgtgttttgagtctttt-tagggagaaatcatgtaaatc 12972358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 405
Target Start/End: Original strand, 22262332 - 22262462
Alignment:
Q  276 tttgtatttcaaaacaaataagatgagagttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-ttta 374  Q
    ||||||||  || |||||||||| |  | ||| |||||||||||| |||||||| || |||| ||||| |||| |  ||||||| ||| |||||| |||     
T  22262332 tttgtattcgaagacaaataagaagtaatttagaggagttgtcaatggtttgagaaaaatattgtattattttcatccgagtcgatgtgattcacttttg 22262431  T
Q  375 tcctaaatcatgcaactctataggtgttttg 405  Q
     ||||||| ||||||||||| ||||||||||    
T  22262432 acctaaattatgcaactctaaaggtgttttg 22262462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 15576315 - 15576254
Alignment:
Q  256 ctatgtttttaatacttttctttgtatttcaaaacaaataagatgagagttataggagttgt 317  Q
    ||||||||||| |||||||||||| |||| || ||||||| ||||||| ||| |||||||||    
T  15576315 ctatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagaggagttgt 15576254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 435
Target Start/End: Original strand, 16439504 - 16439599
Alignment:
Q  339 gtattgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatc 435  Q
    |||||||||||| | |||||||| ||||| ||||| ||||||||| ||||||||  | | ||||||||||| |||| |||| ||||||||||||||||    
T  16439504 gtattgtttttatt-gagtcgttataattaacttttatcctaaataatgcaacttcacatgtgttttgagtctttt-tagtgagaaatcatgtaaatc 16439599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 468
Target Start/End: Complemental strand, 1755648 - 1755502
Alignment:
Q  322 ggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcactt-tatcctaaatcatgcaactctataggtgttttgagtgttttatagtca 420  Q
    |||||||||| ||| | |||||||||| | | || |||||||||||||||| |||||  ||||||| ||||  ||| ||||||||||| |||| |  |||    
T  1755648 ggtttgaggatcattttgtattgttttcatttgattcgttgtaattcacttgtatccctaatcatgtaactacatacgtgttttgagtctttt-tgttca 1755550  T
Q  421 gaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaagga 468  Q
     | ||||||||| | ||| | |||||||| || ||||||||| |||||    
T  1755549 tatatcatgtaatttgacaagtcaagacaccatgtgaaggatcaagga 1755502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 458
Target Start/End: Complemental strand, 14768368 - 14768219
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgag 407  Q
    |||||||||||  |||||||||||  | | |||||| ||| | ||||||  ||||||||||| ||||| ||||| ||||||| |  |||  |||||||||    
T  14768368 aggagttgtcattggtttgaggaattttttgtattggtttcattcgagttattgtaattcacatttattctaaaacatgcaatttcataaatgttttgag 14768269  T
Q  408 tgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaa 458  Q
    | ||||  ||  ||||||||||||||||| | || ||||||||||| ||||    
T  14768268 tcttttc-agatagaaatcatgtaaatcggcaaaacaagacatcacatgaa 14768219  T

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Target: scaffold0065 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 377 - 472
Target Start/End: Original strand, 12328 - 12423
Alignment:
Q  377 ctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    |||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||| | ||||||    
T  12328 ctaaatcatgcaactccataggtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacatcacgtgaaggattgacgatatg 12423  T

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Target: scaffold0337 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 377 - 472
Target Start/End: Original strand, 1892 - 1987
Alignment:
Q  377 ctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    |||||||||||||||| |||||||||||||| ||||| |||| ||||||| |||||||| || |||||||||||||||||||||||| | ||||||    
T  1892 ctaaatcatgcaactccataggtgttttgagagttttgtagtgagaaatcctgtaaatcaacaaatcaagacatcacgtgaaggattgacgatatg 1987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 341 - 462
Target Start/End: Complemental strand, 228252 - 228132
Alignment:
Q  341 attgtttttactcgagtcgttgtaattcacttt-atcctaaatcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacg 439  Q
    |||||||| | |||||||||||||||||| ||| ||| ||||||||||||| ||| | ||||| |   ||||||||||| |||||||||||||||||||     
T  228252 attgttttcattcgagtcgttgtaattcatttttatcataaatcatgcaaccctaaaagtgttgta--tgttttatagtgagaaatcatgtaaatcgaca 228155  T
Q  440 aatcaagacatcacgtgaaggat 462  Q
    |||||||||||||||||||||||    
T  228154 aatcaagacatcacgtgaaggat 228132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 305 - 435
Target Start/End: Original strand, 1796 - 1926
Alignment:
Q  305 ttataggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcactttatcctaaatcatgcaactctataggtgtttt 404  Q
    |||||||| ||||||  ||||||| |||| | | ||||||||||   ||||| ||||||||||||||||||| | ||||||||||||  |   |||||||    
T  1796 ttataggatttgtcattggtttgaagaaccttttgtattgttttcgttcgagccgttgtaattcactttatctttaatcatgcaacttcacttgtgtttt 1895  T
Q  405 gagtgttttatagtcagaaatcatgtaaatc 435  Q
    | ||||||| || | ||||||||||||||||    
T  1896 gggtgttttgtaattagaaatcatgtaaatc 1926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 463
Target Start/End: Complemental strand, 11797 - 11643
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcacttta-tcctaaatcatgcaactctataggtgttttgag 407  Q
    |||||||||||| | ||||| |||| | | |||| ||||| | | || ||||||||||||| |||  |||||||||||||||||  || |||||||||||    
T  11797 aggagttgtcaatgatttgatgaactttttgtatagttttcatttgaatcgttgtaattcagttttgtcctaaatcatgcaactacatgggtgttttgag 11698  T
Q  408 tgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggatt 463  Q
    | ||||   ||  |||||||||||||||||| || |||||||||| || |||||||    
T  11697 tctttt-ccgtacgaaatcatgtaaatcgacaaaacaagacatcaagttaaggatt 11643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 434
Target Start/End: Original strand, 58760 - 58885
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattca-ctttatcctaaatcatgcaactctataggtgttttgag 407  Q
    |||||||||||| |||||||||||| | | |||||||||| | ||| ||| ||||||| ||  |||||||| |||||||||||||| || || |||  ||    
T  58760 aggagttgtcaatggtttgaggaactttttgtattgttttcattcgggtcattgtaatccaggtttatcctgaatcatgcaactctttatgtttttcaag 58859  T
Q  408 tgttttatagtcagaaatcatgtaaat 434  Q
    | |||| |||| |||||||||||||||    
T  58860 tctttt-tagtgagaaatcatgtaaat 58885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 469
Target Start/End: Original strand, 447064 - 447152
Alignment:
Q  381 atcatgcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggat 469  Q
    ||||||| |||| ||||| ||||||||||||||  ||| || |||||||||||||    ||||||||||||| ||||||||| ||||||    
T  447064 atcatgccactccataggcgttttgagtgttttgaagtgaggaatcatgtaaatcattaaatcaagacatcatgtgaaggatcaaggat 447152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 347
Target Start/End: Original strand, 446937 - 447058
Alignment:
Q  226 tgatgacagagcatcacatgccactttttactatgtttttaatactttt-ctttgtatttcaaaacaaataagatgagagttataggagttgtcaacggt 324  Q
    |||||||||||||||| |||  | ||||| ||||||||||| ||||||| ||||  |||| || |||||||||||||||||   |||| ||||  | | |    
T  446937 tgatgacagagcatcatatgata-tttttgctatgtttttagtacttttcctttacatttgaagacaaataagatgagagtctgaggaattgttgatgat 447035  T
Q  325 ttgaggaacatatcgtattgttt 347  Q
    || |||||||||| |||||||||    
T  447036 tttaggaacatattgtattgttt 447058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 453
Target Start/End: Complemental strand, 29359 - 29294
Alignment:
Q  386 gcaactctataggtgttttgagtgttttatagtcagaaatcatgtaaatcgacgaatcaagacatcac 453  Q
    ||||||| ||||||||||||||| |||||  |||| ||||||||||||| |||  |||||||||||||    
T  29359 gcaactccataggtgttttgagtatttta--gtcaaaaatcatgtaaattgacatatcaagacatcac 29294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 472
Target Start/End: Complemental strand, 5762 - 5705
Alignment:
Q  415 tagtcagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggattaaggatatg 472  Q
    |||| ||||||||||||||| ||| ||| |||||||||| ||||||||  ||||||||    
T  5762 tagtgagaaatcatgtaaattgacaaataaagacatcacatgaaggatcgaggatatg 5705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 436
Target Start/End: Original strand, 1458 - 1585
Alignment:
Q  309 aggagttgtcaacggtttgaggaacatatcgtattgtttttactcgagtcgttgtaattcac-tttatcctaaatcatgcaactctataggtgttttgag 407  Q
    ||||||||||||   |||||||| ||| | |||||||||| | |||| || || |||||||| |||||| | ||||||||||||| | || ||||| |||    
T  1458 aggagttgtcaatattttgaggagcattttgtattgttttcattcgattcattttaattcacttttatcattaatcatgcaactcaaaagatgtttcgag 1557  T
Q  408 tgttttatagtcagaaatcatgtaaatcg 436  Q
    | |||| || | | |||||||||||||||    
T  1558 tctttttta-tgaaaaatcatgtaaatcg 1585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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