View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2030_high_43 (Length: 226)
Name: NF2030_high_43
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2030_high_43 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 29578866 - 29578647
Alignment:
| Q |
7 |
gattcaaagatgatttcaagctcctttaaaaagtctacaaacacgtatgtttcattgtgctggttgccatgattatcaatcaaactctttccattcataa |
106 |
Q |
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| T |
29578866 |
gattcaaagatgatttcaagctcctttaaaaagtctacaaacacgtatgtttcattgtgctggttgccatgattatcaatcaaactctttccattcataa |
29578767 |
T |
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| Q |
107 |
tcacagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaagc |
206 |
Q |
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| T |
29578766 |
tcgcagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaagc |
29578667 |
T |
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| Q |
207 |
atttaccgctctagctttct |
226 |
Q |
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| T |
29578666 |
atttaccgctctagctttct |
29578647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 29583032 - 29582820
Alignment:
| Q |
10 |
tcaaagatgatttcaagctcctttaaaaagtctacaaacacgtatgtttcattgtgctggttgccatgattatcaatcaaactctttccattcataatca |
109 |
Q |
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| T |
29583032 |
tcaaagatgccttgaagctccttcaaaaagtccacaaacacgcatgcttctttgtgctggttgccatgattatcaatcaaactttttccgttcataattg |
29582933 |
T |
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| Q |
110 |
cagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaagcatt |
209 |
Q |
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| T |
29582932 |
cagaattgatctttgttttgtctgcaggagtcaccatggaactaacgttgttatcctccattactttactcattttgtaaagatagtcgtccaaagcatt |
29582833 |
T |
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| Q |
210 |
taccgctctagct |
222 |
Q |
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| T |
29582832 |
cattgctctagct |
29582820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 8544615 - 8544813
Alignment:
| Q |
6 |
agattcaaagatgatttcaagctcctttaaaaagtctacaaacacgtatgtttcattgtgctggttgccatgattatcaatcaaactctttccattcata |
105 |
Q |
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| T |
8544615 |
agattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttg------ttatcaatcaaactttttccctttatc |
8544708 |
T |
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| Q |
106 |
atcacagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaag |
205 |
Q |
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| T |
8544709 |
attgcagaattgatattcattttgtctacaggggcgagcttggaattaacacaatcatccttcattactttcctcacattgtaaagataatactccaaag |
8544808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 8580815 - 8580878
Alignment:
| Q |
148 |
gaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaagcattta |
211 |
Q |
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| T |
8580815 |
gaactaacacaattatcctccattactttcctcactttgtaaagataatcgtccaaagcattta |
8580878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 8601083 - 8601143
Alignment:
| Q |
142 |
agcatggaactaacactgttatcctccattactttactcgttttgtaaagataatcttcca |
202 |
Q |
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| T |
8601083 |
agcatggaactaacactatcatccttcattacttttctcatagtgtaaagataatcatcca |
8601143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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