View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2030_high_7 (Length: 445)
Name: NF2030_high_7
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2030_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 246 - 430
Target Start/End: Complemental strand, 46280570 - 46280386
Alignment:
| Q |
246 |
gtttggtgttggtgcagtactgtctatctcaatctcaattctcaacatattccagatatgtattcttcaaatagttccctcaatggaaataacctagcat |
345 |
Q |
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| T |
46280570 |
gtttggtgttggtgcagtactgtctatctcaatctcaattctcaacatattccagatatgtattcttcaaatagttccctcaatggaaataacctagcat |
46280471 |
T |
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| Q |
346 |
tttcctctaaatcacctttttgttcctttgaaagcaactcaacttcatcaaaagatattgaaaacagtcattccccctttcctct |
430 |
Q |
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| T |
46280470 |
tttcctctaaatcacctttttgttcatttgaaagcaactcaacttcatcaaaagatattgaaaacagtcattccccctttcctct |
46280386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 7 - 199
Target Start/End: Complemental strand, 46280817 - 46280617
Alignment:
| Q |
7 |
ggagcagagaatatacacaaaaatgaactgaaaaggatggaattaatagctgctgctcttacttaaagaggaattaacatatatgtcattctcaggcttt |
106 |
Q |
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| T |
46280817 |
ggagcagaaaatatacacaaaaatgaactgaaaaggatggaattaatagctgctgctcttacttaaagaggaattaac----atgtcattctcaggcttt |
46280722 |
T |
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| Q |
107 |
ggaaagtctcaataattaacaagccaaaccaaaatctatagctatgtc------------tatatatatatttcatcatcaagacatgtactagctagct |
194 |
Q |
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| T |
46280721 |
ggaaagtctcgataattaacaagccaaaccaaaatctatagctatgtctatatatatatatatatatatatttcatcatcaagacatgtactagctagct |
46280622 |
T |
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| Q |
195 |
agggc |
199 |
Q |
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| T |
46280621 |
agggc |
46280617 |
T |
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