View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2030_low_10 (Length: 431)
Name: NF2030_low_10
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2030_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 42888467 - 42888064
Alignment:
| Q |
18 |
atatttacattcaatattttacgtacgaatacacacataatatacaaaattatatactagaggtaggacttaatcgatccttttatcaaagaacttgttc |
117 |
Q |
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| T |
42888467 |
atatttacattcaatattttacgtacgaatacacacataatatacaaaattatatactagaggtaggaattaatcgatccttttatcaaagaacttgttc |
42888368 |
T |
|
| Q |
118 |
attgattctcgttgactaagaaaaaccactttgacacggatatgatttagattctatggtgaatctttctctataatagcagtaacctatattttgatga |
217 |
Q |
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| T |
42888367 |
attgattctcgttgactaagaaaaaccactttgacacggatatgatttagattctatggtgaatctttctctataatagcagtaacctatattttgatga |
42888268 |
T |
|
| Q |
218 |
caatatcacacgttcacatactaaaatgcagtccgtacggttaaaccgtcagtggaaaaatcagtatatatattgatactataaaaaggaaaaggannnn |
317 |
Q |
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| T |
42888267 |
caatatcacacgttcacatactaaaatgcagtccgtacggttaaaccgtcagtggaaaaatcagtatatatattgatactataaaaaggaaaaggatttt |
42888168 |
T |
|
| Q |
318 |
nnnnctttctggcaaatcatatgcacattttatcatgcaaacttcatctcaatacgtgatatacatatagattctatagccgctaggagatacgatattc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42888167 |
ttttctttctggcaaatcatatgcacattttatcatgcaaacttcatctcaatacgtgatatacatatagattctatagccgctaggagatacgatattc |
42888068 |
T |
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| Q |
418 |
tgtg |
421 |
Q |
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|||| |
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| T |
42888067 |
tgtg |
42888064 |
T |
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