View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2030_low_14 (Length: 413)
Name: NF2030_low_14
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2030_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 4 - 324
Target Start/End: Complemental strand, 48091057 - 48090741
Alignment:
| Q |
4 |
ttttgcactctgtagtattactttaccgaccaataaggaagaataaatataactgccaattcttcattccattcttgtgctgcatgggacatttaccagt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48091057 |
ttttgcactctgtagtattactttaccgaccaataaggaagaataaatataactgccaattcttcattccattcttgtgctgcatgggacatttaccagt |
48090958 |
T |
|
| Q |
104 |
caaattggatcacacatgtatgtacccttgttgccatttcaaaagtacattggtatatagttttaaaacagcactttatggctatattttttaaattttg |
203 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48090957 |
caaattggatcacacatgta----cccttgttgccatttcaaaagtacattggtatatagttttaaaacatcactttatggctatattttttaaattttg |
48090862 |
T |
|
| Q |
204 |
tgcacgaatgaatatattaaaaataaaaattacttaagatcagttaggaaattggattttaattggtcttcaagacatttttaagtacgttaggaaacca |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
48090861 |
tgcacgaatgaatatattaaaaataaaaattacttaagatcagttaggaaattggattttaattggttttcaagacatttttaagtacgttaggaaacca |
48090762 |
T |
|
| Q |
304 |
acttaagatctttcgtcttag |
324 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
48090761 |
acataagatctttcgtcttag |
48090741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 380
Target Start/End: Complemental strand, 48090707 - 48090668
Alignment:
| Q |
341 |
tatgttttaaaccagttgggtacaaacaaccgactacata |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48090707 |
tatgttttaaaccagttgggtacaaacaaccgactacata |
48090668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University