View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2030_low_16 (Length: 384)
Name: NF2030_low_16
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2030_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 62 - 355
Target Start/End: Original strand, 22291352 - 22291645
Alignment:
| Q |
62 |
tgaattcaatgttcctttattatctttcattagattttaagctcactttgatacaaaaaatggataaaagcagtcacatttaaaatcaaacgtaagaaat |
161 |
Q |
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| T |
22291352 |
tgaattcaatgttcctttattatctttcattagattttaagctcactttgatacaaaaaatggataaaagcagtcacatttaaaatcaaacgtaagaaat |
22291451 |
T |
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| Q |
162 |
gaatgatttgcaatgtagcttcttcaacagttggttttgaatatatcaaaatctatattacctatctaagagtccagagatatattgaataaaaagttca |
261 |
Q |
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| T |
22291452 |
gaataatttgcaatgtagcttcttcaacaattggttttgaatatatcaaaatctatattacctatctaagagtccagagatatattgaataaaaagttca |
22291551 |
T |
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| Q |
262 |
aatacttgcaagcttgagggaccaattcctaatgatagaatagtatacatcttaaattcaaaccatttcaaagattgaaaaaataaggaagata |
355 |
Q |
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| T |
22291552 |
aatacttgcaagcttgagggaccaattcctaataatagaatagtatacatcttaaattcaaaccatttcaaagattgaaaaaataaggaagata |
22291645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 170 - 360
Target Start/End: Complemental strand, 40964575 - 40964384
Alignment:
| Q |
170 |
tgcaatgtagcttcttcaacagttggttttgaatatatcaaaa-tctatattacctatctaagagtccagagatatattgaataaaaagttcaaatactt |
268 |
Q |
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| T |
40964575 |
tgcaatgtagtttcttcaacacttggttttgaatatatcaaaaatctatattaactatctaagagtcaagagatatattgaataaaaagttcaaatactt |
40964476 |
T |
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| Q |
269 |
gcaagcttgagggaccaattcctaatgatagaatagtatacatcttaaattcaaaccatttcaaagattgaaaaaataaggaagataaaagt |
360 |
Q |
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| T |
40964475 |
gcaagctttaggcaccgatttttactaacaggatagtatacaactcacattcaaaccatttcaaagattgacaaaatatggaagataaaagt |
40964384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 40964664 - 40964604
Alignment:
| Q |
62 |
tgaattcaatgttcctttattatctttcattaga-ttttaagctcactttgatacaaaaaa |
121 |
Q |
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|||||||||||||||||||| |||||| | |||| |||||||||||||||| ||||||||| |
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| T |
40964664 |
tgaattcaatgttcctttatcatcttttaatagatttttaagctcactttgttacaaaaaa |
40964604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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