View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2030_low_2 (Length: 582)
Name: NF2030_low_2
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2030_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 2 - 568
Target Start/End: Original strand, 37445252 - 37445818
Alignment:
| Q |
2 |
gggtagattattctcaagaacagctcgaatggctgaaatgttttgccaatgtatttcaatcttttcctttaaaccatcacgcaatatctcccacaccaat |
101 |
Q |
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| T |
37445252 |
gggtaaattatcctcaagaacagctcgaatggctgaaatgttttgccaatgtatttcaatcttttcctttaaaccatcacgcaatatctcccacaccaat |
37445351 |
T |
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| Q |
102 |
tttcgtttagcataataaaacttagctaccaaatccgcaggatatttagcctcaatctgcatgcgcagcatgtaatatgagacaaatattttattatata |
201 |
Q |
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| T |
37445352 |
tttcgtttagcataataaaacttagctaccaaatccgcaggatatttagcctcaatctgcatgcgcagcatgtaatatgagacaaatattttattatata |
37445451 |
T |
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| Q |
202 |
ataaaaaacctcgaatattgtggggtttttagaaatacttaattaatttgactattatacaagtcaaatattatatactagaagtaatagttagtacagt |
301 |
Q |
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| T |
37445452 |
ataaaaaacctcgaatattttgggatttttagaaacacttaattaatttgactattatacaagtcaaatattatatactagtagtaatagttagtacagt |
37445551 |
T |
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| Q |
302 |
aatatataccttaaaaaacccaatgatgagcatatacattggaaaatgaacagccttcaacttctcaactttcttaatttcttctagtttgaatgaagtt |
401 |
Q |
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| T |
37445552 |
aatatataccttaaaaaacccaatgatgagcatatacattggaaaatgaacagccttcaacttctcaactttcttaatttcttctagttggaatgaagtt |
37445651 |
T |
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| Q |
402 |
gtgattttagtatcatcgttcatgttttgttctgtgaatggaagcatctcaggagtcaatgtgagtttcaacccgaggggtagcgtatgcttggatattt |
501 |
Q |
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| T |
37445652 |
gtgattttagtatcatcgttcatgttttgttctgtgaatggaagcatctcaggagtcaatgtgagtttcaacccgaggggtagcgtatgctgggatattt |
37445751 |
T |
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| Q |
502 |
ctctcaacttcagataattatcctgacattaattagaagagataaaataccaaattaatgttgttca |
568 |
Q |
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| T |
37445752 |
ctctcaacttcagataattatcctgacattaattagaagagataaaatacaaaattaatgttgttca |
37445818 |
T |
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