View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2030_low_21 (Length: 337)
Name: NF2030_low_21
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2030_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 937115 - 936804
Alignment:
| Q |
19 |
attctcaactttatctgaattgtgtctcctccaatcctcaaaagcatctttcacaccagtaacaaacagaacaaaagccaacggtagaatcgaaacatat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
937115 |
attctcaactttatctgaattgtgtctcctccaatcttcaaaagcatctttcacaccagtaacaaacagaacaaaagccaacggtagaatcgaaacatat |
937016 |
T |
|
| Q |
119 |
cttccaaatactgcaagttgaggaagctgattgagaatagcaatgatgagaaaatatatataagcaactctatgaaactgttcaaacaaattccttggaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
937015 |
cttccaaatactgcaagttgaggaagctgattgagaatagcaatgatgagaaaatatatataagcaactctatgaaactgttcaaacaaattccttggaa |
936916 |
T |
|
| Q |
219 |
tgaaagtgagaattgagtatttagcagttcgaattgaatttccgaaaaactcaaaattctcattggttttctcaggatcatttatatataccaatcttgc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
936915 |
tgaaagtgagaattgagtatttagcagttcgaattgaatttccgaaaaactcaaaattctcattggttttctcaggatcatttatatataccaatcttgc |
936816 |
T |
|
| Q |
319 |
atcttcatctct |
330 |
Q |
| |
|
|||||||||||| |
|
|
| T |
936815 |
atcttcatctct |
936804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 16941596 - 16941397
Alignment:
| Q |
19 |
attctcaactttatctgaattgtgtctcctccaatcctcaaaagcatctttcacaccagtaacaaacagaacaaaagccaacggtagaatcgaaacatat |
118 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| | |||||||||||| ||||||||| ||||||||||| || || | ||| || ||| | |
|
|
| T |
16941596 |
attctcaactttatctgatctatgtctcctccaatcctcatatgcatctttcacagcagtaacaagaagaacaaaagctaatggcaaaattgatacacct |
16941497 |
T |
|
| Q |
119 |
cttccaaatactgcaagttgaggaagctgattgagaatagcaatgatgagaaaatatatataagcaactctatgaaactgttcaaacaaattccttggaa |
218 |
Q |
| |
|
|| ||||| || || |||||||| | |||||| ||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16941496 |
ctaccaaaaacagctagttgaggtaactgattaagaatagcaattataaggaaataaatataagcaactctatgaaactgttcaaacaaattcctaggaa |
16941397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University