View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2030_low_29 (Length: 300)

Name: NF2030_low_29
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2030_low_29
NF2030_low_29
[»] chr4 (36 HSPs)
chr4 (3-285)||(43800601-43800883)
chr4 (3-122)||(5448628-5448737)
chr4 (11-128)||(16070391-16070498)
chr4 (3-124)||(50782742-50782853)
chr4 (3-131)||(25477182-25477300)
chr4 (9-128)||(20262430-20262539)
chr4 (3-128)||(39237619-39237738)
chr4 (54-110)||(24072745-24072801)
chr4 (6-128)||(46729266-46729377)
chr4 (54-128)||(51787731-51787805)
chr4 (54-128)||(52225979-52226053)
chr4 (57-131)||(52552585-52552659)
chr4 (54-111)||(5536474-5536531)
chr4 (3-54)||(13096572-13096623)
chr4 (54-128)||(48472566-48472641)
chr4 (4-54)||(30153253-30153303)
chr4 (3-53)||(37175052-37175102)
chr4 (68-130)||(50438922-50438984)
chr4 (72-117)||(54438481-54438526)
chr4 (3-51)||(3094209-3094257)
chr4 (49-128)||(40411671-40411751)
chr4 (72-120)||(56217112-56217160)
chr4 (3-54)||(5932910-5932961)
chr4 (54-129)||(22750913-22750988)
chr4 (3-54)||(29584918-29584969)
chr4 (3-54)||(33246527-33246578)
chr4 (3-54)||(38136379-38136430)
chr4 (3-53)||(22750872-22750922)
chr4 (3-53)||(34543727-34543777)
chr4 (4-54)||(45628105-45628155)
chr4 (4-54)||(48472526-48472576)
chr4 (11-49)||(51918690-51918728)
chr4 (4-50)||(54438538-54438584)
chr4 (54-103)||(20116437-20116486)
chr4 (3-52)||(31937422-31937471)
chr4 (72-128)||(29584854-29584910)
[»] chr3 (42 HSPs)
chr3 (3-129)||(30475999-30476115)
chr3 (3-117)||(40645644-40645748)
chr3 (54-128)||(12077816-12077890)
chr3 (54-128)||(29676812-29676886)
chr3 (54-128)||(5504615-5504689)
chr3 (4-116)||(41727271-41727373)
chr3 (3-54)||(46435762-46435813)
chr3 (54-128)||(43187166-43187240)
chr3 (3-128)||(46048480-46048596)
chr3 (3-54)||(51263105-51263156)
chr3 (4-54)||(26517248-26517298)
chr3 (54-128)||(27638150-27638224)
chr3 (3-54)||(11140728-11140779)
chr3 (3-54)||(26043042-26043093)
chr3 (3-54)||(26121355-26121406)
chr3 (3-54)||(39617282-39617333)
chr3 (3-49)||(28477413-28477459)
chr3 (3-53)||(31819430-31819480)
chr3 (54-128)||(50092627-50092701)
chr3 (9-54)||(14645927-14645972)
chr3 (54-130)||(29645314-29645391)
chr3 (54-107)||(35145220-35145273)
chr3 (54-129)||(26998852-26998928)
chr3 (14-54)||(41308819-41308859)
chr3 (72-128)||(50525067-50525123)
chr3 (3-54)||(12077775-12077826)
chr3 (11-50)||(13084398-13084437)
chr3 (3-54)||(27047210-27047261)
chr3 (3-54)||(31531457-31531508)
chr3 (3-50)||(42891446-42891493)
chr3 (3-54)||(52325535-52325586)
chr3 (3-42)||(54425988-54426027)
chr3 (1-47)||(35055816-35055862)
chr3 (3-49)||(41740005-41740051)
chr3 (54-108)||(53717599-53717653)
chr3 (9-54)||(11388144-11388189)
chr3 (3-48)||(21932955-21933000)
chr3 (9-54)||(33412011-33412056)
chr3 (5-54)||(35765680-35765729)
chr3 (72-128)||(28477336-28477392)
chr3 (54-98)||(34055935-34055979)
chr3 (3-35)||(50525008-50525040)
[»] chr5 (23 HSPs)
chr5 (3-128)||(21574909-21575024)
chr5 (3-128)||(25017703-25017818)
chr5 (69-128)||(27925337-27925396)
chr5 (54-128)||(5845136-5845210)
chr5 (11-128)||(34877626-34877733)
chr5 (76-123)||(3631210-3631257)
chr5 (3-54)||(15898492-15898543)
chr5 (54-128)||(3247344-3247418)
chr5 (54-128)||(4738590-4738664)
chr5 (11-128)||(10933966-10934073)
chr5 (54-128)||(27798116-27798190)
chr5 (3-128)||(36177252-36177367)
chr5 (9-54)||(10523309-10523354)
chr5 (3-50)||(3559056-3559103)
chr5 (3-50)||(27587866-27587913)
chr5 (3-53)||(12895238-12895288)
chr5 (54-114)||(40979282-40979342)
chr5 (3-54)||(3247303-3247354)
chr5 (4-54)||(129634-129684)
chr5 (11-53)||(15967149-15967191)
chr5 (54-130)||(15967182-15967259)
chr5 (14-54)||(7510630-7510670)
chr5 (3-47)||(30348106-30348150)
[»] chr2 (29 HSPs)
chr2 (3-128)||(8065102-8065217)
chr2 (11-129)||(9718210-9718318)
chr2 (3-128)||(44424555-44424670)
chr2 (54-123)||(13534380-13534448)
chr2 (3-122)||(41665677-41665785)
chr2 (3-128)||(3237681-3237798)
chr2 (3-54)||(14420701-14420752)
chr2 (54-117)||(35178864-35178927)
chr2 (3-132)||(15851487-15851606)
chr2 (72-129)||(28733784-28733841)
chr2 (3-54)||(27297601-27297652)
chr2 (3-53)||(375375-375425)
chr2 (3-53)||(7255626-7255676)
chr2 (3-53)||(11459178-11459228)
chr2 (11-92)||(38982109-38982188)
chr2 (3-54)||(4398554-4398605)
chr2 (3-129)||(17250991-17251107)
chr2 (3-54)||(24774889-24774940)
chr2 (3-54)||(28264981-28265032)
chr2 (54-121)||(31644513-31644580)
chr2 (3-54)||(43650058-43650109)
chr2 (3-54)||(45214749-45214800)
chr2 (3-53)||(37355061-37355111)
chr2 (54-128)||(44421409-44421483)
chr2 (54-128)||(45214685-45214759)
chr2 (54-107)||(35241779-35241832)
chr2 (3-52)||(44274697-44274746)
chr2 (72-128)||(27297537-27297593)
chr2 (72-128)||(41865676-41865732)
[»] chr1 (42 HSPs)
chr1 (3-128)||(5085118-5085233)
chr1 (3-128)||(33231799-33231914)
chr1 (3-123)||(48721897-48722008)
chr1 (3-123)||(32047406-32047516)
chr1 (54-128)||(3143362-3143436)
chr1 (54-133)||(10160673-10160752)
chr1 (54-128)||(5322093-5322167)
chr1 (54-121)||(9675737-9675804)
chr1 (57-128)||(29302522-29302593)
chr1 (3-54)||(44335312-44335363)
chr1 (8-128)||(16582492-16582602)
chr1 (3-118)||(30336028-30336133)
chr1 (57-121)||(35001343-35001407)
chr1 (3-128)||(29140683-29140798)
chr1 (54-128)||(34696953-34697027)
chr1 (4-54)||(46495332-46495382)
chr1 (3-49)||(50692437-50692483)
chr1 (3-128)||(44652890-44653002)
chr1 (68-128)||(12845070-12845130)
chr1 (3-54)||(8984690-8984741)
chr1 (54-109)||(28334285-28334340)
chr1 (3-54)||(30898592-30898643)
chr1 (54-129)||(36084928-36085003)
chr1 (54-105)||(44395517-44395568)
chr1 (54-128)||(23982662-23982736)
chr1 (4-52)||(9684748-9684796)
chr1 (54-122)||(47643508-47643575)
chr1 (3-42)||(25063245-25063284)
chr1 (11-54)||(28723690-28723733)
chr1 (11-54)||(31808009-31808052)
chr1 (3-54)||(34696912-34696963)
chr1 (3-54)||(38680498-38680549)
chr1 (3-54)||(41737148-41737199)
chr1 (3-54)||(46591125-46591176)
chr1 (3-54)||(47070990-47071041)
chr1 (72-130)||(3831006-3831064)
chr1 (72-122)||(8877737-8877787)
chr1 (3-41)||(13145454-13145492)
chr1 (3-53)||(31305342-31305392)
chr1 (11-52)||(34102361-34102402)
chr1 (3-47)||(2342934-2342978)
chr1 (9-49)||(32152186-32152226)
[»] chr7 (31 HSPs)
chr7 (3-128)||(36726203-36726318)
chr7 (3-128)||(48767524-48767639)
chr7 (3-128)||(1324668-1324783)
chr7 (54-128)||(4089571-4089645)
chr7 (3-122)||(36116287-36116396)
chr7 (3-118)||(37673707-37673812)
chr7 (3-128)||(20123410-20123525)
chr7 (81-130)||(29723419-29723468)
chr7 (3-53)||(21388267-21388317)
chr7 (3-128)||(49100631-49100746)
chr7 (3-54)||(2276607-2276658)
chr7 (3-54)||(10685109-10685160)
chr7 (68-131)||(25098993-25099056)
chr7 (3-54)||(25750392-25750443)
chr7 (3-54)||(37048059-37048110)
chr7 (3-54)||(43465173-43465224)
chr7 (3-54)||(48193639-48193690)
chr7 (10-52)||(29636077-29636119)
chr7 (3-52)||(21809677-21809726)
chr7 (8-53)||(40211312-40211357)
chr7 (8-52)||(21801091-21801135)
chr7 (3-121)||(35128353-35128459)
chr7 (11-54)||(4089538-4089581)
chr7 (3-54)||(6376163-6376214)
chr7 (86-129)||(33181114-33181157)
chr7 (3-49)||(31373728-31373774)
chr7 (55-120)||(18122114-18122179)
chr7 (3-52)||(43601195-43601243)
chr7 (3-52)||(48610166-48610215)
chr7 (72-128)||(20124148-20124204)
chr7 (72-128)||(21388202-21388258)
[»] chr8 (35 HSPs)
chr8 (3-113)||(25198264-25198364)
chr8 (3-119)||(25184999-25185105)
chr8 (3-128)||(24512198-24512313)
chr8 (3-128)||(37956082-37956196)
chr8 (76-131)||(38773443-38773498)
chr8 (54-121)||(39543735-39543802)
chr8 (54-128)||(10396300-10396374)
chr8 (54-128)||(40337263-40337337)
chr8 (54-121)||(16002795-16002862)
chr8 (54-128)||(38770259-38770333)
chr8 (54-119)||(1769519-1769584)
chr8 (3-52)||(26878759-26878808)
chr8 (3-119)||(41086945-41087049)
chr8 (4-123)||(57220-57329)
chr8 (4-52)||(7772538-7772586)
chr8 (3-54)||(2562761-2562812)
chr8 (54-129)||(38203064-38203139)
chr8 (3-42)||(40517776-40517815)
chr8 (7-49)||(5191584-5191626)
chr8 (3-128)||(37141686-37141801)
chr8 (9-54)||(14522641-14522686)
chr8 (54-130)||(40790747-40790823)
chr8 (3-54)||(3113564-3113615)
chr8 (3-54)||(14577683-14577734)
chr8 (54-121)||(16644108-16644175)
chr8 (3-54)||(36437525-36437576)
chr8 (3-54)||(38761389-38761440)
chr8 (54-128)||(4273980-4274054)
chr8 (3-49)||(12762871-12762917)
chr8 (12-54)||(31252695-31252737)
chr8 (3-52)||(14906627-14906676)
chr8 (68-113)||(37600974-37601019)
chr8 (76-128)||(16355785-16355837)
chr8 (72-132)||(34127552-34127612)
chr8 (3-51)||(36309627-36309675)
[»] chr6 (14 HSPs)
chr6 (54-129)||(5895690-5895765)
chr6 (3-54)||(1763837-1763888)
chr6 (3-128)||(5084568-5084687)
chr6 (8-53)||(15981819-15981864)
chr6 (3-50)||(16327151-16327198)
chr6 (3-54)||(16350545-16350596)
chr6 (3-54)||(31945943-31945994)
chr6 (3-53)||(3729414-3729464)
chr6 (4-54)||(4250690-4250740)
chr6 (3-54)||(10669305-10669356)
chr6 (3-50)||(11302883-11302930)
chr6 (3-54)||(12514616-12514667)
chr6 (8-54)||(22410879-22410925)
chr6 (54-123)||(16186538-16186607)
[»] scaffold0121 (1 HSPs)
scaffold0121 (71-128)||(24095-24152)
[»] scaffold1091 (1 HSPs)
scaffold1091 (3-54)||(1943-1994)
[»] scaffold0182 (2 HSPs)
scaffold0182 (81-128)||(22025-22072)
scaffold0182 (3-54)||(22084-22135)
[»] scaffold0013 (1 HSPs)
scaffold0013 (4-52)||(61313-61361)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 3 - 285
Target Start/End: Complemental strand, 43800883 - 43800601
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  43800883 caaaggacaatttggtaatattaacacacaaaacagacaccttaattacacttaattacactgagaacatttcttaacaaatgtgaaaaaggcaatgggt 43800784  T
Q  103 gcctacattaagggacggaggaagtaattagtgtaccatatttgttgccatctaagtagactaagcatatcaatccaaagattaagattgattctctttt 202  Q
    |||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43800783 gcctacgttaagggacggagggagtaattagtgtaccatatttgttaccatctaagtagactaagcatatcaatccaaagattacgattgattctctttt 43800684  T
Q  203 aatattcttctctctttggcagtttgatgacattgaaaatcatcatgggactaaaattattatcttcaatttatggttcaatg 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43800683 aatattcttctctctttggcagtttgatgacattgaaaatcatcatgggactaaaattattatcttcaatttatggttcaatg 43800601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 5448737 - 5448628
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    ||||||| ||||| |||||| |||||||||||||||||||           ||||||| ||||| ||||||||||||||||||||||||||||||||| |    
T  5448737 caaaggataatttcgtaatattaacacacaaaacagacac----------attaattatattgataacatttcttaagaaatgtgaaaaaggcaatggat 5448648  T
Q  103 gcctacattaagggacggag 122  Q
    ||||||||||||||||||||    
T  5448647 gcctacattaagggacggag 5448628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 16070498 - 16070391
Alignment:
Q  11 aatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacat 110  Q
    |||||||||||| ||||||||||||||||||| |||||||||||          || | |||||||||||||||||||||||| |||| |||||||||||    
T  16070498 aatttggtaatattaacacacaaaacagacacattaattacact----------gacagcatttcttaagaaatgtgaaaaagacaataggtgcctacat 16070409  T
Q  111 taagggacggaggaagta 128  Q
    ||||||||||||| ||||    
T  16070408 taagggacggagggagta 16070391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 50782853 - 50782742
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    ||||||||||||| |||||| ||| ||||||||||||||| |||||||||||          || ||| ||||||||||||||||||||||  | |||||    
T  50782853 caaaggacaatttcgtaatattaagacacaaaacagacacattaattacact----------gacaacttttcttaagaaatgtgaaaaagatattgggt 50782764  T
Q  103 gcctacattaagggacggagga 124  Q
    ||||| ||||||||||||||||    
T  50782763 gcctatattaagggacggagga 50782742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 25477300 - 25477182
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||| |||||||| |||||| ||||||| ||||||||||| ||||||||||          ||| ||| ||||||||||||||||||||| ||||||| |    
T  25477300 caaatgacaattttgtaatattaacacataaaacagacacattaattacac----------tgacaacttttcttaagaaatgtgaaaaaagcaatggat 25477211  T
Q  103 gcctacattaagggacggaggaagtaatt 131  Q
    ||||||||||||||||  ||| |||||||    
T  25477210 gcctacattaagggacatagggagtaatt 25477182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 20262430 - 20262539
Alignment:
Q  9 acaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctac 108  Q
    ||||||| |||||| ||||||||||||||||||| |||||||||||          || ||| |||||||||||||||||||||||||||| ||| |||     
T  20262430 acaatttcgtaatattaacacacaaaacagacacattaattacact----------gacaacttttcttaagaaatgtgaaaaaggcaatgagtgtctat 20262519  T
Q  109 attaagggacggaggaagta 128  Q
    |||||||||| |||| ||||    
T  20262520 attaagggacagagggagta 20262539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 39237619 - 39237738
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgg-- 100  Q
    ||||||||||||| |||||| |||||||||||||||| || |||||||||||          || ||| |||||||| ||||||||||||| ||||||      
T  39237619 caaaggacaatttcgtaatattaacacacaaaacagatacattaattacact----------gacaacttttcttaaaaaatgtgaaaaagacaatggat 39237708  T
Q  101 --gtgcctacattaagggacggaggaagta 128  Q
      ||||||||||||||||||||||| ||||    
T  39237709 gcgtgcctacattaagggacggagggagta 39237738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 24072801 - 24072745
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacat 110  Q
    ||||||||||||| ||| ||||||||||||||| |||||| ||||||||||||||||    
T  24072801 ttaattacattgacaacttttcttaagaaatgtaaaaaagacaatgggtgcctacat 24072745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 128
Target Start/End: Complemental strand, 46729377 - 46729266
Alignment:
Q  6 aggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcc 105  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||          ||| ||| |||||||| ||||||||||||| |||||  || |    
T  46729377 aggacaatttcgtaatattaacacacaaaacagacacattaattacac----------tgacaacttttcttaa-aaatgtgaaaaagacaatgaatgtc 46729289  T
Q  106 tacattaagggacggaggaagta 128  Q
    |||||||||||||| ||||||||    
T  46729288 tacattaagggacgaaggaagta 46729266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 51787805 - 51787731
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    |||||||||  || ||| ||||||||||||||||||||| | |||| ||||||||||||||| ||||||| ||||    
T  51787805 ttaattacaccgacaacttttcttaagaaatgtgaaaaatggaatgagtgcctacattaaggaacggagggagta 51787731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 52226053 - 52225979
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||| | ||| |||||||||||| ||||||||||||| |||| ||| |||||||||| ||||||||| ||||    
T  52226053 ttaattatactgacaacatttcttaaaaaatgtgaaaaagacaataggtacctacattaaaggacggagggagta 52225979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 52552585 - 52552659
Alignment:
Q  57 attacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagtaatt 131  Q
    |||||| ||| ||| |||||||| ||| ||||||| |||| |||||||||||||||||||||||| | |||||||    
T  52552585 attacactgacaacttttcttaaaaaacgtgaaaagggcattgggtgcctacattaagggacggatggagtaatt 52552659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 5536531 - 5536474
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacatt 111  Q
    ||||||||| ||| ||  |||||||||||||||||||||||| |||||||||||||||    
T  5536531 ttaattacactgacaatttttcttaagaaatgtgaaaaaggctatgggtgcctacatt 5536474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 13096572 - 13096623
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| ||||||||||||||| |||||||||| |||||||| |||||||||||    
T  13096572 caaatgacaatttggtaatattaacacacaacacagacacattaattacact 13096623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 48472566 - 48472641
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaa-tgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||| ||| ||| |||||||| ||| |||||||||| |||||| ||||||||||||||||| || ||||||    
T  48472566 ttaattacactgacaacttttcttaaaaaaatgtgaaaaagacaatggatgcctacattaagggacagatgaagta 48472641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 30153253 - 30153303
Alignment:
Q  4 aaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||||| |||||||||||| || |||||||||||||||| |||||||||||    
T  30153253 aaaggataatttggtaatattatcacacaaaacagacacattaattacact 30153303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 37175052 - 37175102
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacac 53  Q
    |||| ||||||||||||||| |||||||||||| |||||| ||||||||||    
T  37175052 caaaagacaatttggtaatattaacacacaaaatagacacattaattacac 37175102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 50438922 - 50438984
Alignment:
Q  68 aacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagtaat 130  Q
    ||||||||||||||||||||||||| | |||||| |  || ||||||||||||||| ||||||    
T  50438922 aacatttcttaagaaatgtgaaaaatgtaatggggggttatattaagggacggagggagtaat 50438984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 54438526 - 54438481
Alignment:
Q  72 tttcttaagaaatgtgaaaaaggcaatgggtgcctacattaaggga 117  Q
    |||||||||||||||||||||| |||||| | ||||||||||||||    
T  54438526 tttcttaagaaatgtgaaaaagacaatggatacctacattaaggga 54438481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 3094257 - 3094209
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattac 51  Q
    |||| ||||||||||||||| |||||||||||| |||||| ||||||||    
T  3094257 caaatgacaatttggtaatattaacacacaaaatagacacattaattac 3094209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 40411671 - 40411751
Alignment:
Q  49 tacacttaattacattgagaacatttcttaagaaatgtg-aaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    |||||||||||| | ||| ||| |||||||||||||||| |||||  ||||  ||| ||||||||||||||||||| ||||    
T  40411671 tacacttaattatactgacaacttttcttaagaaatgtgaaaaaaaacaatatgtggctacattaagggacggagggagta 40411751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 56217112 - 56217160
Alignment:
Q  72 tttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacgg 120  Q
    |||||||| |||||||||||| |||||||||| |||| |||||||||||    
T  56217112 tttcttaaaaaatgtgaaaaaagcaatgggtgtctacgttaagggacgg 56217160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 5932961 - 5932910
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| ||||||||| ||||| |||||||||||||| |||| |||||||||||    
T  5932961 caaatgacaatttgataatattaacacacaaaacaaacacattaattacact 5932910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 22750913 - 22750988
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagtaa 129  Q
    |||||||||  || ||| ||||||||||||||||||||| |||| | | |  |||||||||||||||||| |||||    
T  22750913 ttaattacacagacaacttttcttaagaaatgtgaaaaatgcaaagagggattacattaagggacggagggagtaa 22750988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 29584969 - 29584918
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| ||||||||||||||| ||||||||| || |||||| |||||||||||    
T  29584969 caaatgacaatttggtaatattaacacacagaatagacacattaattacact 29584918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 33246527 - 33246578
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||||| |||||||||||| |||||||||||| |||||  |||||||||||    
T  33246527 caaaggataatttggtaatattaacacacaaaatagacattttaattacact 33246578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 38136430 - 38136379
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| ||||||||| ||||| |||||||||||| |||||| |||||||||||    
T  38136430 caaatgacaatttgataatattaacacacaaaatagacacattaattacact 38136379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 22750872 - 22750922
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacac 53  Q
    |||| ||||||||||||||| ||| |||||||||||| || ||||||||||    
T  22750872 caaatgacaatttggtaatattaatacacaaaacagatacattaattacac 22750922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 34543777 - 34543727
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacac 53  Q
    |||||||  ||||||||||| |||||||||||| |||||| ||||||||||    
T  34543777 caaaggattatttggtaatattaacacacaaaatagacacattaattacac 34543727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 45628105 - 45628155
Alignment:
Q  4 aaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||| ||||||||||||| ||| ||||||||||||||| | |||||||||    
T  45628105 aaagggcaatttggtaatattaatacacaaaacagacacatcaattacact 45628155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 48472526 - 48472576
Alignment:
Q  4 aaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||||| ||||| |||||| |||||||||||| |||||| |||||||||||    
T  48472526 aaaggataatttcgtaatattaacacacaaaatagacacattaattacact 48472576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 51918690 - 51918728
Alignment:
Q  11 aatttggtaatactaacacacaaaacagacaccttaatt 49  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  51918690 aatttggtaatactaacacacaaaatagacacattaatt 51918728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 54438584 - 54438538
Alignment:
Q  4 aaaggacaatttggtaatactaacacacaaaacagacaccttaatta 50  Q
    |||||| ||||| |||||| ||||||||||||||||||| |||||||    
T  54438584 aaaggataatttcgtaatattaacacacaaaacagacactttaatta 54438538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 20116486 - 20116437
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtg 103  Q
    ||||||||||||| ||| |||||||| |||| ||||||| ||||||||||    
T  20116486 ttaattacattgacaacttttcttaataaatatgaaaaatgcaatgggtg 20116437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 31937422 - 31937471
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattaca 52  Q
    |||| ||||||||  ||||| ||||||||||||||||||| |||||||||    
T  31937422 caaatgacaatttaataatattaacacacaaaacagacacattaattaca 31937471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 29584910 - 29584854
Alignment:
Q  72 tttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||||||||||||||| |||| |||||| |||||  | ||||||| ||||||    
T  29584910 tttcttaagaaatgtgaaaaatgcaaagggtgcttacatacatggacggatgaagta 29584854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 30476115 - 30475999
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||||||||||          || ||| |||||||| ||||||||||||||||||||||    
T  30476115 caaaggacaatttcgtaatattaacacacaaaacagacacattaattacact----------gacaacttttcttaaaaaatgtgaaaaaggcaatgggt 30476026  T
Q  103 gcctacattaagggacggaggaagtaa 129  Q
    ||||||||||||||||||||| |||||    
T  30476025 gcctacattaagggacggagggagtaa 30475999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 40645748 - 40645644
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||| ||||||||||||||| ||||||||||||||||||| ||||||||||           || ||||||||||||||||||||||||||||||||| |    
T  40645748 caaaagacaatttggtaatattaacacacaaaacagacacattaattacaca----------gacaacatttcttaagaaatgtgaaaaaggcaatggat 40645659  T
Q  103 gcctacattaaggga 117  Q
    |||||||||||||||    
T  40645658 gcctacattaaggga 40645644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 12077816 - 12077890
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||| ||| ||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||    
T  12077816 ttaattacactgacaacttttcttaagaaatttgaaaaatgcaatgggtgcctacattaagggacggatgaagta 12077890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 29676812 - 29676886
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||| ||| ||  ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  29676812 ttaattacactgacaatttttcttaagaaatatgaaaaaggcaatgggtgcctacattaagggacggagggagta 29676886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 5504615 - 5504689
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||| ||| |||||||||||||||||||||||| || || |||||||||||||||||||| |||| ||||    
T  5504615 ttaattacactgacaacatttcttaagaaatgtgaaaagggaaacgggtgcctacattaagggaccgagggagta 5504689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 41727271 - 41727373
Alignment:
Q  4 aaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtg 103  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||||||||          ||| ||| ||| ||||||||||||||||||||||||| ||    
T  41727271 aaaggacaattttgtaatattaacacacaaaacagacacattaattacac----------tgacaactttttttaagaaatgtgaaaaaggcaatggatg 41727360  T
Q  104 cctacattaaggg 116  Q
     ||||||||||||    
T  41727361 gctacattaaggg 41727373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 46435762 - 46435813
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  46435762 caaaggacaatttggtaatattaacacacaaaacagacacattaattacact 46435813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 43187166 - 43187240
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||||||| ||| ||| ||||||||| |||||||||||||| ||| ||||||||| ||||||||| ||||    
T  43187166 ttaattacattgacaactttttttaagaaatatgaaaaaggcaatgagtgactacattaacggacggagggagta 43187240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 46048596 - 46048480
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtga-aaaaggcaatggg 101  Q
    ||||||||||||| |||||| ||| ||||||||||||||| |||||||||||          || ||| ||||||||||||||||| ||||||| ||| |    
T  46048596 caaaggacaatttcgtaatattaatacacaaaacagacacattaattacact----------gacaacttttcttaagaaatgtgaaaaaaggcgatgag 46048507  T
Q  102 tgcctacattaagggacggaggaagta 128  Q
    ||||||||||||||  |||||| ||||    
T  46048506 tgcctacattaaggagcggagggagta 46048480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 51263156 - 51263105
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||||||||||| |||||||||||||| ||||||||||| |||||||||||    
T  51263156 caaaggacaatttagtaatactaacacataaaacagacacattaattacact 51263105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 26517248 - 26517298
Alignment:
Q  4 aaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||||||||||||||||| ||||||| ||||||||||| |||||||||||    
T  26517248 aaaggacaatttggtaatattaacacagaaaacagacacattaattacact 26517298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 27638150 - 27638224
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||| | | ||| ||||||||||||||||||||||| ||||| |||||| ||||| ||||||||| ||||    
T  27638150 ttaattacactaataacttttcttaagaaatgtgaaaaaggtaatggatgcctatattaaaggacggaggcagta 27638224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 11140779 - 11140728
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| |||||||    
T  11140779 caaaggataatttggtaatactaacacacaaaacatacacattatttacact 11140728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 26043093 - 26043042
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||||||||||||||||| | ||||||||||||||||||  |||||||||||    
T  26043093 caaaggacaatttggtaacattaacacacaaaacagacatattaattacact 26043042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 26121406 - 26121355
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||||||||||||| ||||| |||||||||||||| |||| |||||||||||    
T  26121406 caaaggacaatttgataatattaacacacaaaacaaacacattaattacact 26121355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 39617282 - 39617333
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||||||||||| |||||| ||||| ||||||||||||| |||||||||||    
T  39617282 caaaggacaatttcgtaatattaacatacaaaacagacacattaattacact 39617333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 28477459 - 28477413
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaatt 49  Q
    |||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  28477459 caaaagacaatttggtaatattaacacacaaaacagacacattaatt 28477413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 31819480 - 31819430
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacac 53  Q
    ||||||||||||| |||||| ||||||| ||||||||||| ||||||||||    
T  31819480 caaaggacaatttcgtaatattaacacataaaacagacacattaattacac 31819430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 50092701 - 50092627
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||| ||  ||| ||| ||||||||||| ||||||||||| | ||| |||||||||||||||||| ||||    
T  50092701 ttaattacactgtcaacttttgttaagaaatgtaaaaaaggcaatagatgcttacattaagggacggagggagta 50092627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 14645927 - 14645972
Alignment:
Q  9 acaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||||||||||||| |||||||||||| |||||| |||||||||||    
T  14645927 acaatttggtaatattaacacacaaaatagacacattaattacact 14645972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 29645391 - 29645314
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaagg-caatgggtgcctacattaagggacggaggaagtaat 130  Q
    ||||||||| | | |||||||||||| ||||||||||||   ||| || ||||||||||||||||| |||||||||||    
T  29645391 ttaattacactaacaacatttcttaataaatgtgaaaaaaaacaacggatgcctacattaagggacagaggaagtaat 29645314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 35145273 - 35145220
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgccta 107  Q
    ||||||||| | | ||| ||||||||||||||||||||||||| ||||||||||    
T  35145273 ttaattacactcacaacttttcttaagaaatgtgaaaaaggcactgggtgccta 35145220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 26998928 - 26998852
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacatt-aagggacggaggaagtaa 129  Q
    ||||||| | ||| ||| ||||||||||||||||||||||  ||||| | |||||||| |||||||||||| |||||    
T  26998928 ttaattataatgacaacttttcttaagaaatgtgaaaaagataatggatacctacattaaagggacggagggagtaa 26998852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 41308819 - 41308859
Alignment:
Q  14 ttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  41308819 ttggtaatattaacacacaaaacagacacattaattacact 41308859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 50525067 - 50525123
Alignment:
Q  72 tttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||||||||||||||| | || |||||| ||||||||||||| |||| ||||    
T  50525067 tttcttaagaaatgtgaaaaaagaaaagggtgcttacattaagggacagagggagta 50525123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 12077775 - 12077826
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| |||||||| |||||| |||||||||||| |||||| |||||||||||    
T  12077775 caaatgacaattttgtaatattaacacacaaaagagacacattaattacact 12077826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 13084398 - 13084437
Alignment:
Q  11 aatttggtaatactaacacacaaaacagacaccttaatta 50  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  13084398 aatttggtaatattaacacacaaaacagacacattaatta 13084437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 27047210 - 27047261
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| ||||||||||||||| |||||||||||| |||||| |||||| ||||    
T  27047210 caaaagacaatttggtaatattaacacacaaaatagacacattaattgcact 27047261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 31531457 - 31531508
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| ||||||||| |||||  |||||||||||||||||| |||||||||||    
T  31531457 caaaagacaatttgataatatcaacacacaaaacagacacattaattacact 31531508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 42891493 - 42891446
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaatta 50  Q
    ||||||||| |||||||||| ||||||||||||||||||  |||||||    
T  42891493 caaaggacagtttggtaatattaacacacaaaacagacaaattaatta 42891446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 52325535 - 52325586
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||||||||||||| ||||| ||||||| |||| |||||| |||||||||||    
T  52325535 caaaggacaatttgataatattaacacataaaatagacacattaattacact 52325586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 54425988 - 54426027
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacac 42  Q
    |||| ||||||||||||||| |||||||||||||||||||    
T  54425988 caaatgacaatttggtaatattaacacacaaaacagacac 54426027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35055862 - 35055816
Alignment:
Q  1 agcaaaggacaatttggtaatactaacacacaaaacagacaccttaa 47  Q
    |||||| ||||||||||||||| |||||||||||| |||||| ||||    
T  35055862 agcaaatgacaatttggtaatattaacacacaaaatagacacattaa 35055816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 41740005 - 41740051
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaatt 49  Q
    ||||||| |||||||||||| |||||||||||| |||||| ||||||    
T  41740005 caaaggataatttggtaatattaacacacaaaatagacacattaatt 41740051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 53717599 - 53717653
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctac 108  Q
    ||||||||||||| || |||||||||||||||| ||||||  ||||| |||||||    
T  53717599 ttaattacattgacaatatttcttaagaaatgtaaaaaagataatggatgcctac 53717653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 11388189 - 11388144
Alignment:
Q  9 acaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||||||||||||| |||||| ||||| |||||| |||||||||||    
T  11388189 acaatttggtaatattaacacgcaaaatagacacattaattacact 11388144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 21933000 - 21932955
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaat 48  Q
    ||||||| |||||||||||| |||||||||||| |||||| |||||    
T  21933000 caaaggataatttggtaatattaacacacaaaatagacacattaat 21932955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 33412011 - 33412056
Alignment:
Q  9 acaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||||||||||||| |||||||||||| |||||| |||||| ||||    
T  33412011 acaatttggtaatattaacacacaaaatagacacattaattgcact 33412056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 35765680 - 35765729
Alignment:
Q  5 aaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| ||||||||||||| ||| ||||||||||||||  |||||||||||    
T  35765680 aaggtcaatttggtaatattaatacacaaaacagacatattaattacact 35765729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 28477392 - 28477336
Alignment:
Q  72 tttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||||||||||||||| | || ||| || |||||  ||||||||||||||||    
T  28477392 tttcttaagaaatgtgaaaaaagaaaagggggcttacatatagggacggaggaagta 28477336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 34055935 - 34055979
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaat 98  Q
    ||||||||||||| ||  ||| |||||||||||||||||||||||    
T  34055935 ttaattacattgacaattttttttaagaaatgtgaaaaaggcaat 34055979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 50525008 - 50525040
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaa 35  Q
    |||||||||||||||||||| ||||||||||||    
T  50525008 caaaggacaatttggtaatattaacacacaaaa 50525040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 21574909 - 21575024
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||||||||||||||||||| ||||| |||||| |||||| |||| |||||| ||          |||||||||||||||||||||||||| ||||||||    
T  21574909 caaaggacaatttggtaatattaacatacaaaatagacacattaagtacactaaa----------aacatttcttaagaaatgtgaaaaagacaatgggt 21574998  T
Q  103 gcctacattaagggacggaggaagta 128  Q
    ||||||||||||||||||||| ||||    
T  21574999 gcctacattaagggacggagggagta 21575024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 25017703 - 25017818
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||| ||||||||||||||| ||||||||||||||||||| ||||||| |||          || |||||||||||||||| ||||||||| ||||| ||    
T  25017703 caaatgacaatttggtaatattaacacacaaaacagacacattaattatact----------gacaacatttcttaagaaacgtgaaaaagacaatgagt 25017792  T
Q  103 gcctacattaagggacggaggaagta 128  Q
    | ||||||||||||||||||| ||||    
T  25017793 gtctacattaagggacggagggagta 25017818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 27925396 - 27925337
Alignment:
Q  69 acatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||    
T  27925396 acatttcttaagaaatgtgaaaaaagcaatgggtgcctacataaagggacggagggagta 27925337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 5845210 - 5845136
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||| ||| |||| |||||||||||| ||||||||||||||| ||||||||| ||| |||||||||||||    
T  5845210 ttaattacactgacaacaattcttaagaaatatgaaaaaggcaatggatgcctacatcaagagacggaggaagta 5845136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 34877733 - 34877626
Alignment:
Q  11 aatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacat 110  Q
    |||||||||||| ||||||||||||||||||  ||||||||||          ||| ||||||||||||||||||||||||||||||||  || ||||||    
T  34877733 aatttggtaatattaacacacaaaacagacaaattaattacac----------tgacaacatttcttaagaaatgtgaaaaaggcaatgaatgtctacat 34877644  T
Q  111 taagggacggaggaagta 128  Q
    ||| ||||||||| ||||    
T  34877643 taaaggacggagggagta 34877626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 3631210 - 3631257
Alignment:
Q  76 ttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggagg 123  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||    
T  3631210 ttaagaaatgtgaaaaagacaatggatgcctacattaagggacggagg 3631257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 15898492 - 15898543
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||||||||    
T  15898492 caaaggacaatttgataatattaacacacaaaacagacacattaattacact 15898543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 3247344 - 3247418
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||| ||  ||| |||||||||||||||||||||||||||||||  |||| |||||| ||||||| ||||    
T  3247344 ttaattacactgtcaacttttcttaagaaatgtgaaaaaggcaatgggtatctacgttaaggaacggagggagta 3247418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 4738664 - 4738590
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||| ||| || ||||||||||||||||||||||| |||||| ||| | |||||||||| ||||| ||||    
T  4738664 ttaattacactgacaatatttcttaagaaatgtgaaaaagacaatggatgcatgcattaagggatggagggagta 4738590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 10934073 - 10933966
Alignment:
Q  11 aatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacat 110  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||          ||| ||||||||| || ||||||||||||||||||   |||||||||    
T  10934073 aatttggtaatattaacatacaaaacagacacattaattacac----------tgacaacatttctgaaaaaatgtgaaaaaggcaataaatgcctacat 10933984  T
Q  111 taagggacggaggaagta 128  Q
    ||||| ||||||| ||||    
T  10933983 taaggaacggagggagta 10933966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 27798190 - 27798116
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||| ||| || ||||||||| ||||||||||||  |||||| ||||| |||||||||||||||| ||||    
T  27798190 ttaattacactgacaatatttcttaaaaaatgtgaaaaatacaatggatgcctgcattaagggacggagggagta 27798116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 36177367 - 36177252
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||| |||||||| |||||| |||||||||||| |||||| ||||||||||          ||| ||| ||||||||||||||| |||||| |||| | |    
T  36177367 caaatgacaattttgtaatattaacacacaaaatagacacattaattacac----------tgataacttttcttaagaaatgtaaaaaagacaatagat 36177278  T
Q  103 gcctacattaagggacggaggaagta 128  Q
    ||||||||||||||| ||||| ||||    
T  36177277 gcctacattaagggatggagggagta 36177252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 10523309 - 10523354
Alignment:
Q  9 acaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||    
T  10523309 acaatttggtaatattaacacacaaaacagacacattaattacact 10523354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 3559056 - 3559103
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaatta 50  Q
    |||||||||||||||||||| |||||||||||| |||||| |||||||    
T  3559056 caaaggacaatttggtaatattaacacacaaaatagacacattaatta 3559103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 27587913 - 27587866
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaatta 50  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||||||    
T  27587913 caaaggacaatttagtaatattaacacacaaaacagacacattaatta 27587866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 12895238 - 12895288
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacac 53  Q
    |||| ||||||||||||||| ||| ||||||||||||||| ||||||||||    
T  12895238 caaaagacaatttggtaatattaatacacaaaacagacacattaattacac 12895288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 40979282 - 40979342
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaag 114  Q
    |||||||| |||| ||| ||| ||||||||| |||||||| |||||| |||||||||||||    
T  40979282 ttaattaccttgacaacttttattaagaaatatgaaaaagacaatggatgcctacattaag 40979342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 3247303 - 3247354
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||||||||||| |||||| ||||| ||||||||||||  |||||||||||    
T  3247303 caaaggacaatttcgtaatattaacatacaaaacagacatattaattacact 3247354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 129684 - 129634
Alignment:
Q  4 aaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| |||||||||||||| ||| |||||||| |||||| |||||||||||    
T  129684 aaagaacaatttggtaatattaatacacaaaatagacacattaattacact 129634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 15967149 - 15967191
Alignment:
Q  11 aatttggtaatactaacacacaaaacagacaccttaattacac 53  Q
    |||||||||||| ||| ||||||||||||||| ||||||||||    
T  15967149 aatttggtaatattaatacacaaaacagacacattaattacac 15967191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 15967182 - 15967259
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtg-aaaaaggcaatgggtgcctacattaagggacggaggaagtaat 130  Q
    |||||||||  || ||| |||||||||||||||| ||||||||||||  || ||||||||| ||||||| | ||||||    
T  15967182 ttaattacaccgacaacctttcttaagaaatgtgaaaaaaggcaatgaatgtctacattaaaggacggaaggagtaat 15967259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 7510670 - 7510630
Alignment:
Q  14 ttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||||||| |||||||||||||| |||| |||||||||||    
T  7510670 ttggtaatattaacacacaaaacatacacattaattacact 7510630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 30348106 - 30348150
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaa 47  Q
    ||||||| |||||||||||| |||||||||||| |||||| ||||    
T  30348106 caaaggaaaatttggtaatattaacacacaaaatagacacattaa 30348150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 8065102 - 8065217
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||||||||          || ||||||||||| |||||||||||| |||||||||     
T  8065102 caaaggataatttggtaatattaacacacaaaacagacacattaattacact----------gacaacatttcttaggaaatgtgaaaagggcaatggga 8065191  T
Q  103 gcctacattaagggacggaggaagta 128  Q
    ||||||||||||||||||||| ||||    
T  8065192 gcctacattaagggacggagggagta 8065217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 9718210 - 9718318
Alignment:
Q  11 aatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacat 110  Q
    |||||||||||| ||||||||||||||||||| |||||||||||          || ||||||||||||||||||||||||| ||||||| || ||||||    
T  9718210 aatttggtaatattaacacacaaaacagacacattaattacact----------gacaacatttcttaagaaatgtgaaaaatgcaatggatggctacat 9718299  T
Q  111 taagggacggaggaagtaa 129  Q
    ||||||||||||| |||||    
T  9718300 taagggacggagggagtaa 9718318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 44424670 - 44424555
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    ||||||||||||| |||||| ||||| ||||||||||||| ||||||||||| |           ||| ||||||||||||||||||||| |||||| ||    
T  44424670 caaaggacaatttcgtaatattaacatacaaaacagacacattaattacactaac----------aacttttcttaagaaatgtgaaaaatgcaatgagt 44424581  T
Q  103 gcctacattaagggacggaggaagta 128  Q
    ||||||||||||||||||||| ||||    
T  44424580 gcctacattaagggacggagggagta 44424555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 13534448 - 13534380
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggagg 123  Q
    ||||||||| ||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  13534448 ttaattacactgacaacatttcttaagaaatgtgaaaa-ggcaataggtgcctacattaagggacggagg 13534380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 41665785 - 41665677
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||||||||||||| || || ||||||||||||||||||| |||||||||||          || |||||||||||||||||||||||||  ||||| ||    
T  41665785 caaaggacaatttgatactattaacacacaaaacagacacattaattacact----------gacaacatttcttaagaaatgtgaaaaa-acaatgagt 41665697  T
Q  103 gcctacattaagggacggag 122  Q
    ||||||||||||||||||||    
T  41665696 gcctacattaagggacggag 41665677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 3237798 - 3237681
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    ||||||| ||||| |||||| ||||||||||||||||||| ||||||||| ||||| ||| |       |||||||| |||||||||||||  ||| |||    
T  3237798 caaaggataattttgtaatattaacacacaaaacagacacattaattaca-ttaataacact-------tttcttaaaaaatgtgaaaaagataataggt 3237707  T
Q  103 gcctacattaagggacggaggaagta 128  Q
     |||||||||||||||||||| ||||    
T  3237706 acctacattaagggacggagggagta 3237681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 14420752 - 14420701
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  14420752 caaaggacaatttggtaatattaacacacaaaacagacacattaattacact 14420701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 35178864 - 35178927
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaaggga 117  Q
    |||| |||| ||| ||| |||||||||||||||||||||  |||||||||||||||||||||||    
T  35178864 ttaactacactgacaacttttcttaagaaatgtgaaaaaaacaatgggtgcctacattaaggga 35178927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 15851606 - 15851487
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||||||||||||  ||||| ||||||| ||||||||||| ||||||||||          | | ||| |||||||||||||||||||||| |||| | |    
T  15851606 caaaggacaatttcataatattaacacaaaaaacagacacattaattacac----------tcacaacttttcttaagaaatgtgaaaaagacaatagat 15851517  T
Q  103 gcctacattaagggacggaggaagtaatta 132  Q
    | |||||||||||||| |||| ||||||||    
T  15851516 gtctacattaagggacagagggagtaatta 15851487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 28733841 - 28733784
Alignment:
Q  72 tttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagtaa 129  Q
    |||||||| |||||||||||||  |||||||||||||||||||||||| ||| |||||    
T  28733841 tttcttaaaaaatgtgaaaaagaaaatgggtgcctacattaagggacgaagggagtaa 28733784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 27297652 - 27297601
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||||| ||||| |||||| ||||||||||||||||||| |||||||||||    
T  27297652 caaaggataattttgtaatattaacacacaaaacagacacattaattacact 27297601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 375375 - 375425
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacac 53  Q
    |||| ||||||||| |||||||||||||||||| |||||| ||||||||||    
T  375375 caaatgacaatttgataatactaacacacaaaatagacacattaattacac 375425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 7255676 - 7255626
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacac 53  Q
    ||||||| |||||||||||| ||| ||||||||||||||| ||||||||||    
T  7255676 caaaggataatttggtaatattaatacacaaaacagacacattaattacac 7255626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 11459228 - 11459178
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacac 53  Q
    ||||||||||||| |||||| ||||||||||||||||||| ||| ||||||    
T  11459228 caaaggacaatttagtaatattaacacacaaaacagacacattatttacac 11459178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 38982109 - 38982188
Alignment:
Q  11 aatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaa 92  Q
    |||||||||||| |||||||||||||||| || |||| |||| |||||||||  || ||| ||||||||||||||| |||||    
T  38982109 aatttggtaatattaacacacaaaacagatacattaa-taca-ttaattacacagacaacttttcttaagaaatgtaaaaaa 38982188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 4398554 - 4398605
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| |||||||| |||||| |||||||||||| |||||| |||||||||||    
T  4398554 caaatgacaatttcgtaatattaacacacaaaatagacacattaattacact 4398605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 17250991 - 17251107
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||| |||||||| |||||| ||||||||||||||||||| ||||||| ||| |           ||| |||||||| ||||||||||||| |||| | |    
T  17250991 caaatgacaattttgtaatattaacacacaaaacagacacattaattatactaac----------aacttttcttaaaaaatgtgaaaaagacaatagat 17251080  T
Q  103 gcctacattaagggacggaggaagtaa 129  Q
     ||||||||||| |||||||| |||||    
T  17251081 acctacattaagagacggagggagtaa 17251107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 24774940 - 24774889
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| ||||||||||||||| |||||||||||| ||| || |||||||||||    
T  24774940 caaaagacaatttggtaatattaacacacaaaatagatacattaattacact 24774889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 28264981 - 28265032
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| ||||||||||||||| |||| ||||||||| |||| |||||||||||    
T  28264981 caaatgacaatttggtaatattaacgcacaaaacaaacacattaattacact 28265032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 31644513 - 31644580
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacgga 121  Q
    ||||||| | ||| ||| |||||||  ||||||||||||| |||||| |||||||||||| |||||||    
T  31644513 ttaattaaactgataacttttcttataaaatgtgaaaaagacaatggatgcctacattaaaggacgga 31644580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 43650109 - 43650058
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||| ||||||| |||||| ||||| ||||||||||||| |||||||||||    
T  43650109 caaagaacaatttagtaatattaacatacaaaacagacacattaattacact 43650058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 45214800 - 45214749
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||||| |||||||  |||| ||||||||||||||||||| |||||||||||    
T  45214800 caaagggcaatttgaaaatattaacacacaaaacagacacattaattacact 45214749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 37355111 - 37355061
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacac 53  Q
    |||| |||||||| |||||| |||||||||||| |||||| ||||||||||    
T  37355111 caaatgacaattttgtaatattaacacacaaaagagacacattaattacac 37355061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 44421483 - 44421409
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||| ||| ||  ||||||||||||||||||||| | || ||| |  |||||||||||||||||| ||||    
T  44421483 ttaattacactgacaatttttcttaagaaatgtgaaaaaagtaaagggagtttacattaagggacggagggagta 44421409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 45214759 - 45214685
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||| ||| ||| ||||||||||||||||||||| |||| ||| || |||||   |||||||||| ||||    
T  45214759 ttaattacactgacaacttttcttaagaaatgtgaaaaatgcaaagggggcttacatatcgggacggagggagta 45214685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 35241779 - 35241832
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgccta 107  Q
    |||||||||  || ||||||||||| ||||||| |||||||||||| |||||||    
T  35241779 ttaattacacagacaacatttcttatgaaatgtaaaaaaggcaatgtgtgccta 35241832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 44274697 - 44274746
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattaca 52  Q
    |||| |||||||||| |||| ||||||| ||||||||||| |||||||||    
T  44274697 caaatgacaatttggcaatattaacacataaaacagacacattaattaca 44274746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 27297593 - 27297537
Alignment:
Q  72 tttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||||||||||||||| |||| ||| |  ||||||||||||| |||| ||||    
T  27297593 tttcttaagaaatgtgaaaaaagcaaagggggtttacattaagggacagagggagta 27297537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 41865732 - 41865676
Alignment:
Q  72 tttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||||||||||||||| ||||  || || |||||||||||| ||||| ||||    
T  41865732 tttcttaagaaatgtgaaaaaagcaaaaggggcttacattaagggaaggagggagta 41865676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 5085118 - 5085233
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||| |||||||| |||||| ||||||||||||||||||| |||||||||||          || ||| |||||||| ||||||||||||||||||||||    
T  5085118 caaaagacaatttcgtaatattaacacacaaaacagacacattaattacact----------gacaacttttcttaaaaaatgtgaaaaaggcaatgggt 5085207  T
Q  103 gcctacattaagggacggaggaagta 128  Q
    ||||||||||||||||||||| ||||    
T  5085208 gcctacattaagggacggagggagta 5085233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 33231914 - 33231799
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||||||||||          || ||| ||| ||||||||||||||||||||||||| |    
T  33231914 caaaggacaatttcgtaatattaacacacaaaacagacacattaattacact----------gacaactttttttaagaaatgtgaaaaaggcaatggat 33231825  T
Q  103 gcctacattaagggacggaggaagta 128  Q
    | ||||||||||||||||||| ||||    
T  33231824 ggctacattaagggacggagggagta 33231799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 48721897 - 48722008
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaa-aggcaatggg 101  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||||||||||          || | | |||||||||||||||||||| ||||||||||    
T  48721897 caaaggacaatttcgtaatattaacacacaaaacagacacattaattacact----------gacagcttttcttaagaaatgtgaaaaaaggcaatggg 48721986  T
Q  102 tgcctacattaagggacggagg 123  Q
    ||||||||||||||||||||||    
T  48721987 tgcctacattaagggacggagg 48722008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 32047516 - 32047406
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||| |||||||| |||||| |||||||||||||| |||| ||||||||||          ||| ||| ||||||||||||||||||||| |||||||||    
T  32047516 caaatgacaatttcgtaatattaacacacaaaacaaacacattaattacac----------tgacaacttttcttaagaaatgtgaaaaaagcaatgggt 32047427  T
Q  103 gcctacattaagggacggagg 123  Q
    |||||||||||||||||||||    
T  32047426 gcctacattaagggacggagg 32047406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 3143436 - 3143362
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||    
T  3143436 ttaattacaatgacaacttttcttaagaaatgtgaaaaaagcaatgggtgcctacattaagggacagagggagta 3143362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 10160752 - 10160673
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagtaattag 133  Q
    ||||||||| ||| ||| |||||||||||||||||||||||||| || |||||| ||||||||| ||||| |||||||||    
T  10160752 ttaattacactgataacttttcttaagaaatgtgaaaaaggcaacggatgcctatattaagggatggagggagtaattag 10160673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 5322093 - 5322167
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||||||| ||| |||||||| |||| ||||||||||||| | |||||||||||||||||||||| ||||    
T  5322093 ttaattacattgataacttttcttaaaaaatatgaaaaaggcaatagatgcctacattaagggacggagggagta 5322167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 9675737 - 9675804
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacgga 121  Q
    ||||||||| ||| ||| |||||||||||| || |||||| |||||||||||||||||||||||||||    
T  9675737 ttaattacactgacaacttttcttaagaaacgtaaaaaagtcaatgggtgcctacattaagggacgga 9675804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 29302522 - 29302593
Alignment:
Q  57 attacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    |||||| ||| ||| ||||||||||||||||||||||| ||||| ||||||||||||| | |||||||||||    
T  29302522 attacactgacaacttttcttaagaaatgtgaaaaagggaatggatgcctacattaagcgtcggaggaagta 29302593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 44335363 - 44335312
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  44335363 caaaggacaatttggtaatattaacacacaaaacagacacattaattacact 44335312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 16582602 - 16582492
Alignment:
Q  8 gacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgccta 107  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||||          || ||| |||||||||||||||||||||| |||||| || |||    
T  16582602 gacaatttcgtaatattaacacacaaaacagacacattaattacact----------gacaacttttcttaagaaatgtgaaaaagacaatggatggcta 16582513  T
Q  108 cattaagggacggaggaagta 128  Q
    |||||||| || |||| ||||    
T  16582512 cattaaggaacagagggagta 16582492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 30336133 - 30336028
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||||||||||||||||||| |||||||||||| |||||| ||||||||||           || ||| ||||||||||||||||||||| |||||| ||    
T  30336133 caaaggacaatttggtaatattaacacacaaaatagacacattaattacac----------cgacaacttttcttaagaaatgtgaaaaaagcaatgagt 30336044  T
Q  103 gcctacattaagggac 118  Q
    | |||||||| |||||    
T  30336043 gtctacattatgggac 30336028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 35001343 - 35001407
Alignment:
Q  57 attacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacgga 121  Q
    |||||| ||| ||| |||||||| ||||||||||||| ||||||||||||| |||||||||||||    
T  35001343 attacactgacaacttttcttaataaatgtgaaaaagacaatgggtgcctagattaagggacgga 35001407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 29140683 - 29140798
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    ||||||||||||| |||||| ||| ||||||||||||||| ||||||||||           |  ||| ||||||||||||||||||||||||||| | |    
T  29140683 caaaggacaattttgtaatattaatacacaaaacagacacattaattacacc----------ggcaacttttcttaagaaatgtgaaaaaggcaatagat 29140772  T
Q  103 gcctacattaagggacggaggaagta 128  Q
    | ||||||||| ||||||||| ||||    
T  29140773 gactacattaaaggacggagggagta 29140798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 34696953 - 34697027
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||| ||| ||| |||||||| ||||||||||||| || ||| | |||||||||||||||||||| ||||    
T  34696953 ttaattacactgacaacttttcttaaaaaatgtgaaaaagacagtggatccctacattaagggacggagggagta 34697027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 46495382 - 46495332
Alignment:
Q  4 aaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||||||||||| ||||| ||||||||||||||||||| |||||||||||    
T  46495382 aaaggacaatttgataatattaacacacaaaacagacacattaattacact 46495332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 50692483 - 50692437
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaatt 49  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||    
T  50692483 caaaggacaatttggtaatactaacacacaaaatagacacattaatt 50692437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 44652890 - 44653002
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    ||||| ||||| |||||||| ||| ||||||||||||||| |||||||||||             |||||||||||||||||||||||| |||||||  |    
T  44652890 caaagaacaatgtggtaatattaaaacacaaaacagacacattaattacact-------------aacatttcttaagaaatgtgaaaatggcaatgaat 44652976  T
Q  103 gcctacattaagggacggaggaagta 128  Q
    | ||||||||| ||||||||| ||||    
T  44652977 ggctacattaaaggacggagggagta 44653002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 12845070 - 12845130
Alignment:
Q  68 aacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||||||||||||||||||| |||||||| |  || ||||||||||||||| ||||    
T  12845070 aacatttcttaagaaatgtgaaaaatgcaatggggggttatattaagggacggagggagta 12845130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 8984690 - 8984741
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| |||||||| |||||| ||||||||||||||||||| |||||||||||    
T  8984690 caaatgacaatttagtaatattaacacacaaaacagacacattaattacact 8984741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 28334285 - 28334340
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctaca 109  Q
    ||||||||| ||| ||| |||||||||||||||||||||| ||||||||| |||||    
T  28334285 ttaattacactgacaacttttcttaagaaatgtgaaaaagacaatgggtgactaca 28334340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 30898592 - 30898643
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||||| |||||||||||| ||||||| ||||||||||| |||||||||||    
T  30898592 caaaggataatttggtaatattaacacataaaacagacacattaattacact 30898643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 36085003 - 36084928
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagtaa 129  Q
    ||||||||| ||| ||  |||||||| ||||||||||||| |||||  |||||||||||||||||| | |||||||    
T  36085003 ttaattacactgataatttttcttaaaaaatgtgaaaaagacaatgattgcctacattaagggacgaaagaagtaa 36084928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 44395568 - 44395517
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcc 105  Q
    ||||||||| ||| |||||||||||||||||||||||| | |||||||||||    
T  44395568 ttaattacactgacaacatttcttaagaaatgtgaaaaggacaatgggtgcc 44395517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 23982662 - 23982736
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||||||| ||| ||||||||||||||||||||| |||| |||  | |||||  ||||||||||| ||||    
T  23982662 ttaattacattgacaacttttcttaagaaatgtgaaaaatgcaaaggggacttacatatagggacggagggagta 23982736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 9684748 - 9684796
Alignment:
Q  4 aaaggacaatttggtaatactaacacacaaaacagacaccttaattaca 52  Q
    |||||||||||| |||||| |||| |||||||||||||| |||||||||    
T  9684748 aaaggacaattttgtaatattaacgcacaaaacagacacattaattaca 9684796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 47643575 - 47643508
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggag 122  Q
    ||||||||| ||| ||| ||||||||||||||||||||| |||| ||| |  |||||||||||||||||    
T  47643575 ttaattacactgacaacttttcttaagaaatgtgaaaaa-gcaaagggagtttacattaagggacggag 47643508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 25063284 - 25063245
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacac 42  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  25063284 caaaggacaattaggtaatattaacacacaaaacagacac 25063245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 28723690 - 28723733
Alignment:
Q  11 aatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||||||||||| |||||||||||| |||||| |||||||||||    
T  28723690 aatttggtaatattaacacacaaaatagacacattaattacact 28723733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 31808009 - 31808052
Alignment:
Q  11 aatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||||||||||| |||||||||||| |||||| |||||||||||    
T  31808009 aatttggtaatattaacacacaaaatagacacattaattacact 31808052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 34696912 - 34696963
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| |||||||| |||||| ||||||||||||||||||  |||||||||||    
T  34696912 caaatgacaatttcgtaatattaacacacaaaacagacatattaattacact 34696963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 38680549 - 38680498
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| ||||||||| ||||| |||||||||||| |||||| |||||||||||    
T  38680549 caaatgacaatttgataatattaacacacaaaatagacacattaattacact 38680498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 41737199 - 41737148
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| ||||||||||||||| |||||||||||| |||||  |||||||||||    
T  41737199 caaaagacaatttggtaatattaacacacaaaatagacattttaattacact 41737148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 46591176 - 46591125
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||||||||||| | ||||| |||||||||||||| |||| |||||||||||    
T  46591176 caaaggacaattcgataatattaacacacaaaacaaacacattaattacact 46591125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 47070990 - 47071041
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| ||||||||||||||| ||||||| |||| |||||| |||||||||||    
T  47070990 caaatgacaatttggtaatattaacacataaaatagacacattaattacact 47071041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 3831064 - 3831006
Alignment:
Q  72 tttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagtaat 130  Q
    |||||||| |||||||||||| ||||| ||||  |||||||||||||||| | ||||||    
T  3831064 tttcttaaaaaatgtgaaaaatgcaataggtgtttacattaagggacggaaggagtaat 3831006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 8877787 - 8877737
Alignment:
Q  72 tttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggag 122  Q
    |||||||| |||| |||||||||||||| ||| ||||||||| ||||||||    
T  8877787 tttcttaaaaaatatgaaaaaggcaatgagtgtctacattaaaggacggag 8877737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 13145492 - 13145454
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagaca 41  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  13145492 caaaggacaatttggtaatattaacatacaaaacagaca 13145454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 31305392 - 31305342
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacac 53  Q
    |||||||||||||||||||| || || |||||| |||||| ||||||||||    
T  31305392 caaaggacaatttggtaatattagcatacaaaatagacacattaattacac 31305342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 34102402 - 34102361
Alignment:
Q  11 aatttggtaatactaacacacaaaacagacaccttaattaca 52  Q
    |||||| ||||| ||||||||||||||||||| |||||||||    
T  34102402 aatttgataatattaacacacaaaacagacacattaattaca 34102361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 2342978 - 2342934
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaa 47  Q
    |||| ||||||||||||||| |||||||||||| |||||| ||||    
T  2342978 caaaagacaatttggtaatattaacacacaaaatagacacattaa 2342934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 32152226 - 32152186
Alignment:
Q  9 acaatttggtaatactaacacacaaaacagacaccttaatt 49  Q
    |||||||||||||| |||||||||||| |||||| ||||||    
T  32152226 acaatttggtaatattaacacacaaaatagacacattaatt 32152186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 36726203 - 36726318
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||||||||||||||||||| |||||||||||||| |||| ||||||||||| |           ||||| |||||||| ||| |||||||||||||| |    
T  36726203 caaaggacaatttggtaatattaacacacaaaacaaacacattaattacactaac----------aacatctcttaagagatgcgaaaaaggcaatggat 36726292  T
Q  103 gcctacattaagggacggaggaagta 128  Q
    ||||||||||||||||||||||||||    
T  36726293 gcctacattaagggacggaggaagta 36726318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 48767639 - 48767524
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||||||||||          || ||| ||| ||||||||||||||||| |||||||||    
T  48767639 caaaggacaatttcgtaatattaacacacaaaacagacacattaattacact----------gacaacgttttttaagaaatgtgaaaaaagcaatgggt 48767550  T
Q  103 gcctacattaagggacggaggaagta 128  Q
    ||||||||||||||||| ||| ||||    
T  48767549 gcctacattaagggacgtagggagta 48767524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 1324783 - 1324668
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||| ||||||||| ||| | ||||||||||||||||||| ||||||||||          ||| |||||||||||||||||||||||||||||||| ||    
T  1324783 caaatgacaatttgataagattaacacacaaaacagacacattaattacac----------tgataacatttcttaagaaatgtgaaaaaggcaatgagt 1324694  T
Q  103 gcctacattaagggacggaggaagta 128  Q
    |  ||||||||||||| |||| ||||    
T  1324693 ggatacattaagggacagagggagta 1324668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 4089571 - 4089645
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||| ||| ||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||| ||||    
T  4089571 ttaattacactgacaacttttcttaagaaatgtgaaaaagtcaatggatgcctacattaagggaaggagggagta 4089645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 36116396 - 36116287
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||| |||||||| |||||| ||||||| ||||||||||| ||||||||||           || |||||||||||||||||||||||||| |||||  |    
T  36116396 caaatgacaatttcgtaatattaacacataaaacagacacattaattacac----------cgacaacatttcttaagaaatgtgaaaaagacaatgaat 36116307  T
Q  103 gcctacattaagggacggag 122  Q
    ||||||||||||||||||||    
T  36116306 gcctacattaagggacggag 36116287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 37673812 - 37673707
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||| ||||||||  ||||| ||||||||||||||||||| ||||||||||          | | |||||||||||||||||||||||||| ||||||||    
T  37673812 caaaagacaatttcataatattaacacacaaaacagacacattaattacac----------tcacaacatttcttaagaaatgtgaaaaagacaatgggt 37673723  T
Q  103 gcctacattaagggac 118  Q
    | ||||||||||||||    
T  37673722 gtctacattaagggac 37673707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 20123525 - 20123410
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||||||||||||| ||||| ||||||||||||||||||| ||||||||||          ||| ||| ||||||||||||||||||||| |||| |||     
T  20123525 caaaggacaatttgataatattaacacacaaaacagacacattaattacac----------tgacaacttttcttaagaaatgtgaaaaaagcaaaggga 20123436  T
Q  103 gcctacattaagggacggaggaagta 128  Q
    |  |||||  ||||||||||||||||    
T  20123435 gtttacatatagggacggaggaagta 20123410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 29723468 - 29723419
Alignment:
Q  81 aaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagtaat 130  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  29723468 aaatgtgaaaaagacaatgggtgcctacattaagggacggagggagtaat 29723419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 21388317 - 21388267
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacac 53  Q
    ||||||||||||| |||||| ||||||||||||||||||| ||||||||||    
T  21388317 caaaggacaatttagtaatattaacacacaaaacagacacattaattacac 21388267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 49100746 - 49100631
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    ||||||||||||| |||||| ||||||| ||||||||||| ||||||||||          ||| ||| | | |||||| ||| ||||||||||||||||    
T  49100746 caaaggacaatttcgtaatattaacacataaaacagacacattaattacac----------tgacaacttattttaagagatgcgaaaaaggcaatgggt 49100657  T
Q  103 gcctacattaagggacggaggaagta 128  Q
    | |||||||||||||| |||| ||||    
T  49100656 ggctacattaagggacagagggagta 49100631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 2276607 - 2276658
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||||||||||||||||||| ||||||||||||||||||  |||| ||||||    
T  2276607 caaaggacaatttggtaatattaacacacaaaacagacaaattaactacact 2276658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 10685160 - 10685109
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||||||||||| |||||| ||||||| ||||||||||| |||||||||||    
T  10685160 caaaggacaatttcgtaatattaacacataaaacagacacattaattacact 10685109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 25098993 - 25099056
Alignment:
Q  68 aacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagtaatt 131  Q
    ||||||| ||||||||||||||||| |||||||| |  || ||||||||||||||| |||||||    
T  25098993 aacattttttaagaaatgtgaaaaatgcaatggggggttatattaagggacggagggagtaatt 25099056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 25750443 - 25750392
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| |||||||| |||||| ||||||||||||||||||| |||||||||||    
T  25750443 caaatgacaattttgtaatattaacacacaaaacagacacattaattacact 25750392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 37048110 - 37048059
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||||||||||||| || | ||||||||||||||||||| |||||||||||    
T  37048110 caaaggacaatttgggaacattaacacacaaaacagacacattaattacact 37048059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 43465173 - 43465224
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| |||||||||  |||||||||||||||||||||||| |||||||||||    
T  43465173 caaaagacaatttgaaaatactaacacacaaaacagacacattaattacact 43465224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 48193690 - 48193639
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||||| |||||||||||| |||||||||||| |||||| |||||||||||    
T  48193690 caaaggataatttggtaatattaacacacaaaatagacacattaattacact 48193639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 29636077 - 29636119
Alignment:
Q  10 caatttggtaatactaacacacaaaacagacaccttaattaca 52  Q
    ||||||||||||| ||||||||||||||||||| |||||||||    
T  29636077 caatttggtaatattaacacacaaaacagacacattaattaca 29636119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 21809677 - 21809726
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattaca 52  Q
    ||||||||||||| |||||| ||||||| ||||||||||| |||||||||    
T  21809677 caaaggacaatttagtaatattaacacaaaaaacagacacattaattaca 21809726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 40211312 - 40211357
Alignment:
Q  8 gacaatttggtaatactaacacacaaaacagacaccttaattacac 53  Q
    |||||||| |||||| ||||||||||||||||||| ||||||||||    
T  40211312 gacaatttcgtaatattaacacacaaaacagacacattaattacac 40211357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 21801091 - 21801135
Alignment:
Q  8 gacaatttggtaatactaacacacaaaacagacaccttaattaca 52  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||    
T  21801091 gacaatttagtaatattaacacacaaaacagacacattaattaca 21801135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 35128459 - 35128353
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||||||||||||  ||||| ||||||||||||||||||  ||||||||||          ||| ||| |||||||  ||||||||||||| |||| |||    
T  35128459 caaaggacaatttcataatattaacacacaaaacagacatattaattacac----------tgacaacttttctta--aaatgtgaaaaagacaataggt 35128372  T
Q  103 gcctacattaagggacgga 121  Q
    || ||||||||||||||||    
T  35128371 gcttacattaagggacgga 35128353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 4089538 - 4089581
Alignment:
Q  11 aatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||| |||||| ||||||||||||||||||| |||||||||||    
T  4089538 aatttcgtaatattaacacacaaaacagacacattaattacact 4089581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 6376163 - 6376214
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| |||||||| |||||| |||||||||||||||| || |||||||||||    
T  6376163 caaatgacaatttagtaatattaacacacaaaacagagacattaattacact 6376214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 33181157 - 33181114
Alignment:
Q  86 tgaaaaaggcaatgggtgcctacattaagggacggaggaagtaa 129  Q
    ||||||| |||||| |||||||||||||| ||||||||||||||    
T  33181157 tgaaaaatgcaatgagtgcctacattaagagacggaggaagtaa 33181114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 31373728 - 31373774
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaatt 49  Q
    ||||||||||||| |||||| |||||||||||| |||||| ||||||    
T  31373728 caaaggacaatttagtaatattaacacacaaaatagacacattaatt 31373774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 18122114 - 18122179
Alignment:
Q  55 taattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacgg 120  Q
    |||||||| | | ||| |||||||||||||||||||||| |||||| ||  ||||||||| |||||    
T  18122114 taattacactcacaacttttcttaagaaatgtgaaaaagacaatggatgtatacattaagagacgg 18122179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 43601195 - 43601243
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattaca 52  Q
    ||||||||||||| |||||||| ||| ||||||||||||||| |||||||    
T  43601195 caaaggacaattttgtaatacttaca-acaaaacagacacctcaattaca 43601243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 48610166 - 48610215
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattaca 52  Q
    |||| |||||||| |||||| ||| ||||||||||||||| |||||||||    
T  48610166 caaaagacaatttcgtaatattaatacacaaaacagacacattaattaca 48610215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 20124204 - 20124148
Alignment:
Q  72 tttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    |||||||| |||||||||||| ||||  || || |||||||||||||||||| ||||    
T  20124204 tttcttaaaaaatgtgaaaaaagcaaaaggggcttacattaagggacggagggagta 20124148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 21388258 - 21388202
Alignment:
Q  72 tttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||||||||||||||| |||| | | |  || ||||||||||||||||||||    
T  21388258 tttcttaagaaatgtgaaaaaagcaaagagagtttaaattaagggacggaggaagta 21388202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 25198364 - 25198264
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||||||||||||||||||| |||||||||||||| |||| |||||||||||          || ||| ||||||||||||||||||||||||||||| |    
T  25198364 caaaggacaatttggtaatattaacacacaaaacaaacacattaattacact----------gacaacttttcttaagaaatgtgaaaaaggcaatggat 25198275  T
Q  103 gcctacattaa 113  Q
    |||||||||||    
T  25198274 gcctacattaa 25198264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 25185105 - 25184999
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||| |||||||| |||||| ||||||||||||||||||| ||| |||||||          || ||| |||||||||||||||||||||||||||||||    
T  25185105 caaatgacaatttcgtaatattaacacacaaaacagacacattagttacact----------gacaacttttcttaagaaatgtgaaaaaggcaatgggt 25185016  T
Q  103 gcctacattaagggacg 119  Q
    || ||||||||||||||    
T  25185015 gcatacattaagggacg 25184999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 24512198 - 24512313
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||| ||||||||| ||||| ||||||||||||||||||| |||||||||||          || ||  |||||||| |||||||||||||  ||||| |    
T  24512198 caaaagacaatttgataatattaacacacaaaacagacacattaattacact----------gacaaattttcttaaaaaatgtgaaaaagataatggat 24512287  T
Q  103 gcctacattaagggacggaggaagta 128  Q
    ||||||||||||||||||||||||||    
T  24512288 gcctacattaagggacggaggaagta 24512313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 37956196 - 37956082
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||||||||| || |||||| ||||||||||||||||||| |||||||||||          || ||| |||||||||||||||||||||| |||| |||    
T  37956196 caaaggacaaattcgtaatattaacacacaaaacagacacattaattacact----------gacaacttttcttaagaaatgtgaaaaagacaat-ggt 37956108  T
Q  103 gcctacattaagggacggaggaagta 128  Q
     |||||||||||||||||||| ||||    
T  37956107 acctacattaagggacggagggagta 37956082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 38773443 - 38773498
Alignment:
Q  76 ttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagtaatt 131  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  38773443 ttaagaaatgtgaaaaagacaatggttgcctacattaagggacggagggagtaatt 38773498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 39543735 - 39543802
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacgga 121  Q
    |||||||||  || ||||||||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  39543735 ttaattacacggacaacatttcttaagaaatatgaaaaaggcaataggtgcctacattaaaggacgga 39543802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 10396300 - 10396374
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||||||| ||| |||||||| |||||||||||| | ||||||||| |||| ||||||||||||| ||||    
T  10396300 ttaattacattgacaacttttcttaataaatgtgaaaaatgaaatgggtgcatacaataagggacggagggagta 10396374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 40337263 - 40337337
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||| | ||| ||| |||| ||||||||||||||||| |||||| |||||||||||||||||||||| ||||    
T  40337263 ttaattatactgataacttttcataagaaatgtgaaaaagacaatggatgcctacattaagggacggagggagta 40337337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 16002795 - 16002862
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacgga 121  Q
    |||||||||  || ||| |||||||| |||||||||||||| |||||||| |||||||||||||||||    
T  16002795 ttaattacacagacaacttttcttaaaaaatgtgaaaaaggaaatgggtgtctacattaagggacgga 16002862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 38770259 - 38770333
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||| ||| ||| | ||||||||||| |||||||| ||||| ||||||||||||||| ||||||| ||||    
T  38770259 ttaattacactgacaacttatcttaagaaatatgaaaaagacaatgcgtgcctacattaaggaacggagggagta 38770333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 1769519 - 1769584
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacg 119  Q
    ||||||||| ||| |||||||||||| |||||||||||| | ||||| ||||||||||||| ||||    
T  1769519 ttaattacactgataacatttcttaaaaaatgtgaaaaaagtaatggatgcctacattaagagacg 1769584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 26878759 - 26878808
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattaca 52  Q
    |||||||||||||||||||| |||||||||||| |||||| |||||||||    
T  26878759 caaaggacaatttggtaatattaacacacaaaatagacacattaattaca 26878808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 41087049 - 41086945
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    ||||||| |||||| ||||| ||||||||||| ||||||| ||||||||||          ||| || ||||||||||||||||| ||||||||||||||    
T  41087049 caaaggaaaatttgataatattaacacacaaatcagacacattaattacac----------tgacaatatttcttaagaaatgtg-aaaaggcaatgggt 41086961  T
Q  103 gcctacattaagggacg 119  Q
    | |||||||||||||||    
T  41086960 g-ctacattaagggacg 41086945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 57220 - 57329
Alignment:
Q  4 aaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtg 103  Q
    |||| ||||||| |||||| ||||||||||||||||||| ||||||||||           || ||| |||||||||||||||||||||  ||||  |||    
T  57220 aaagaacaatttcgtaatattaacacacaaaacagacacattaattacac----------cgacaacttttcttaagaaatgtgaaaaaaacaataagtg 57309  T
Q  104 cctacattaagggacggagg 123  Q
    |||| |||||||||||||||    
T  57310 cctatattaagggacggagg 57329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 7772586 - 7772538
Alignment:
Q  4 aaaggacaatttggtaatactaacacacaaaacagacaccttaattaca 52  Q
    |||||||||||| |||||| ||||||||||||||||||| |||||||||    
T  7772586 aaaggacaatttcgtaatattaacacacaaaacagacacattaattaca 7772538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 2562761 - 2562812
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||||||||||| |||||| ||||| ||||||||||||| |||||||||||    
T  2562761 caaaggacaatttcgtaatattaacatacaaaacagacacattaattacact 2562812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 38203064 - 38203139
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagtaa 129  Q
    |||||||||  || ||| ||| ||||||||||||||||||  || ||||||||||||||| ||||||||| |||||    
T  38203064 ttaattacaccgacaacttttattaagaaatgtgaaaaagataacgggtgcctacattaaaggacggagggagtaa 38203139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 40517815 - 40517776
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacac 42  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  40517815 caaaggacaatttggtaatattaacacacaaaacagacac 40517776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 5191584 - 5191626
Alignment:
Q  7 ggacaatttggtaatactaacacacaaaacagacaccttaatt 49  Q
    |||||||||||||||| ||||||||||||||||||| ||||||    
T  5191584 ggacaatttggtaatattaacacacaaaacagacacattaatt 5191626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 37141801 - 37141686
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||| |||||||| |||||| |||||||||||||||| || ||||||||||          ||| ||| ||| |||| |||||||||||| ||||| |||    
T  37141801 caaatgacaatttcgtaatattaacacacaaaacagatacattaattacac----------tgacaactttttttaaaaaatgtgaaaaatgcaataggt 37141712  T
Q  103 gcctacattaagggacggaggaagta 128  Q
    || ||||||||| |||||||| ||||    
T  37141711 gcttacattaagagacggagggagta 37141686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 14522641 - 14522686
Alignment:
Q  9 acaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||||||||||||| |||||||||||||| |||| |||||||||||    
T  14522641 acaatttggtaatattaacacacaaaacatacacattaattacact 14522686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 40790823 - 40790747
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagtaat 130  Q
    ||||||||| ||| ||| |||||||||||||||||||||   || ||| |  |||||||||||||||||| ||||||    
T  40790823 ttaattacactgacaacttttcttaagaaatgtgaaaaaaataaagggggtttacattaagggacggagggagtaat 40790747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 3113564 - 3113615
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| ||||||||| ||||| ||||||||||||||||||  |||||||||||    
T  3113564 caaaagacaatttgataatattaacacacaaaacagacatattaattacact 3113615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 14577683 - 14577734
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||| |||||||||||||| ||||| |||||| |||||| |||||||||||    
T  14577683 caaagtacaatttggtaatattaacaaacaaaatagacacattaattacact 14577734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 16644108 - 16644175
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacgga 121  Q
    ||||||||| | | ||| ||||||||||||||||||||| |||||| |||| |||||  |||||||||    
T  16644108 ttaattacactaacaacttttcttaagaaatgtgaaaaatgcaatgagtgcttacatacagggacgga 16644175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 36437576 - 36437525
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||||||||||||||||||  |||||||||||| |||||| |||||| ||||    
T  36437576 caaaggacaatttggtaatgttaacacacaaaatagacacattaattgcact 36437525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 38761389 - 38761440
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| ||||||||  ||||| ||||||||||||||||||| |||||||||||    
T  38761389 caaatgacaatttcataatattaacacacaaaacagacacattaattacact 38761440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 4273980 - 4274054
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||| | | || ||||||||||||||||||||||| ||||  ||| ||||||||| ||||| ||| ||||    
T  4273980 ttaattacactaacaatatttcttaagaaatgtgaaaaagacaatacgtgtctacattaatggacgaagggagta 4274054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 12762917 - 12762871
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaatt 49  Q
    ||||||||||||| |||||| |||||||||||| |||||| ||||||    
T  12762917 caaaggacaatttagtaatattaacacacaaaatagacacattaatt 12762871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 31252695 - 31252737
Alignment:
Q  12 atttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| |||||| ||||||||||||||||||| |||||||||||    
T  31252695 atttcgtaatattaacacacaaaacagacacattaattacact 31252737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 14906676 - 14906627
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattaca 52  Q
    ||||||| |||||||||||| |||||||||||| |||||  |||||||||    
T  14906676 caaaggataatttggtaatattaacacacaaaatagacatattaattaca 14906627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 37600974 - 37601019
Alignment:
Q  68 aacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaa 113  Q
    |||||||||||| ||||||||||||||  |||||| ||||||||||    
T  37600974 aacatttcttaaaaaatgtgaaaaaggtgatgggtccctacattaa 37601019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 16355837 - 16355785
Alignment:
Q  76 ttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||||||||||| |||||||| |  || ||||||||||||||| ||||    
T  16355837 ttaagaaatgtgaaaaatgcaatgggggattatattaagggacggagggagta 16355785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 34127552 - 34127612
Alignment:
Q  72 tttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagtaatta 132  Q
    |||||||| ||  |||||||| ||||| ||||| || ||||||||||||||| ||||||||    
T  34127552 tttcttaataagagtgaaaaacgcaataggtgcttatattaagggacggagggagtaatta 34127612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 36309627 - 36309675
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattac 51  Q
    |||| ||||||||| ||||| |||||||||||| |||||| ||||||||    
T  36309627 caaatgacaatttgataatattaacacacaaaatagacacattaattac 36309675  T

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Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 5895765 - 5895690
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagtaa 129  Q
    ||||||||||| | ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||    
T  5895765 ttaattacattaacaacttttcttaagaaatgtgaaaaagacaatggatgcctacattaagggacggagggagtaa 5895690  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 1763888 - 1763837
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||||||||||    
T  1763888 caaaggacaatttagtaatattaacacacaaaacagacacattaattacact 1763837  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 5084568 - 5084687
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacacttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggt 102  Q
    |||||||||||||| ||||| |||||||||||||| |||| || ||||      |||||| | | ||| |||||||||||||||||||| | |||| | |    
T  5084568 caaaggacaatttgataatattaacacacaaaacaaacacatttatta------attacactaacaacttttcttaagaaatgtgaaaaggacaatagat 5084661  T
Q  103 gcctacattaagggacggaggaagta 128  Q
    ||||| ||||| | ||||||||||||    
T  5084662 gcctatattaaagtacggaggaagta 5084687  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 15981864 - 15981819
Alignment:
Q  8 gacaatttggtaatactaacacacaaaacagacaccttaattacac 53  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  15981864 gacaatttggtaatattaacacacaaaacagacacattaattacac 15981819  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 16327198 - 16327151
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaatta 50  Q
    |||| ||||||||||||||| ||||||||||||||||||| |||||||    
T  16327198 caaatgacaatttggtaatattaacacacaaaacagacacattaatta 16327151  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 16350596 - 16350545
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| ||||||||||||||| ||||||||||||||||| | |||||||||||    
T  16350596 caaatgacaatttggtaatattaacacacaaaacagactcattaattacact 16350545  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 31945943 - 31945994
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| ||||||||||||||| |||||||||||| |||||| |||||||||||    
T  31945943 caaacgacaatttggtaatattaacacacaaaatagacacattaattacact 31945994  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 3729464 - 3729414
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacac 53  Q
    ||||| |||||||||||||| |||||||||||| |||||| ||||||||||    
T  3729464 caaagaacaatttggtaatattaacacacaaaatagacacattaattacac 3729414  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 4250690 - 4250740
Alignment:
Q  4 aaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||||||| || |||||| ||||||||||||||||||| |||||||||||    
T  4250690 aaaggacaacttcgtaatattaacacacaaaacagacacattaattacact 4250740  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 10669305 - 10669356
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||| |||||||||||||| |||||||||||| |||||| |||||| ||||    
T  10669305 caaagaacaatttggtaatattaacacacaaaatagacacattaattgcact 10669356  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 11302930 - 11302883
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaatta 50  Q
    ||||||||||||| |||||| ||||||| ||||||||||| |||||||    
T  11302930 caaaggacaattttgtaatattaacacaaaaaacagacacattaatta 11302883  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 12514616 - 12514667
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    |||| ||||||||||||||| |||||||||||| |||||| |||||| ||||    
T  12514616 caaaagacaatttggtaatattaacacacaaaatagacacattaattgcact 12514667  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 22410879 - 22410925
Alignment:
Q  8 gacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||||||||||||| ||||| | ||||||||||| |||||||||||    
T  22410879 gacaatttggtaatattaacataaaaaacagacacattaattacact 22410925  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 16186607 - 16186538
Alignment:
Q  54 ttaattacattgagaacatttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggagg 123  Q
    ||||||||| | | ||| |||||||  |||||||||||||  |||||||| ||||||||||||| |||||    
T  16186607 ttaattacactaataacttttcttacaaaatgtgaaaaagataatgggtggctacattaagggatggagg 16186538  T

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Target: scaffold0121 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 24152 - 24095
Alignment:
Q  71 atttcttaagaaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    |||||||||||||||||||||| ||||||  |||||||||||| ||||||||| ||||    
T  24152 atttcttaagaaatgtgaaaaatgcaatgaatgcctacattaaaggacggagggagta 24095  T

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Target: scaffold1091 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1091
Description:

Target: scaffold1091; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 1943 - 1994
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||||| |||||||||||| |||||||||||| |||||| |||||||||||    
T  1943 caaaggataatttggtaatattaacacacaaaatagacacattaattacact 1994  T

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Target: scaffold0182 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 22072 - 22025
Alignment:
Q  81 aaatgtgaaaaaggcaatgggtgcctacattaagggacggaggaagta 128  Q
    ||||||||||||| ||||  ||||||||||||||||||||||| ||||    
T  22072 aaatgtgaaaaagacaatatgtgcctacattaagggacggagggagta 22025  T

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Target: scaffold0182; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 22135 - 22084
Alignment:
Q  3 caaaggacaatttggtaatactaacacacaaaacagacaccttaattacact 54  Q
    ||||||||||| |||||||| ||| |||||||||| |||| |||||||||||    
T  22135 caaaggacaatatggtaatattaatacacaaaacaaacacattaattacact 22084  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 61313 - 61361
Alignment:
Q  4 aaaggacaatttggtaatactaacacacaaaacagacaccttaattaca 52  Q
    ||||||||||||  ||||| |||||||||||||| |||| |||||||||    
T  61313 aaaggacaatttaataatattaacacacaaaacaaacacgttaattaca 61361  T

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