View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2030_low_36 (Length: 250)
Name: NF2030_low_36
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2030_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 72 - 241
Target Start/End: Complemental strand, 37171605 - 37171439
Alignment:
| Q |
72 |
ccagttcagcttttaattaa---ttattaaattaagtcatctatatatgccatgcctatgttcatagacatatagacaataataatacagaagaaagctt |
168 |
Q |
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| T |
37171605 |
ccagttcagcttttaattaaatattattaaattaagtcacctatatatgccatgcctatgttcatagacatatagacaataataatac---agaaagctt |
37171509 |
T |
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| Q |
169 |
ttnnnnnnngacaaaataataatgttcatctaaatatttatgtattttttcattttgtgaaaacataactaac |
241 |
Q |
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| T |
37171508 |
tt-aaaaaagacaaaataataatgttcatctaaatatttatgtattttttcattt--tgaaaacataactaac |
37171439 |
T |
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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 37171707 - 37171649
Alignment:
| Q |
17 |
tgagtagggaagaagaaaagaaacaaagcaacgaatcttctccatttagtattatccag |
75 |
Q |
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| T |
37171707 |
tgagtagggaagaagaaaagaaacaaagcaacgaatcttctccgtttagtattatccag |
37171649 |
T |
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