View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2030_low_41 (Length: 241)
Name: NF2030_low_41
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2030_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-128; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 29578646 - 29578412
Alignment:
| Q |
1 |
cttgaaacttcatatcttcaaccttgaatttctcaccttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29578646 |
cttgaaacttcatatcttcaaccttgaatttctcagcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgat |
29578547 |
T |
|
| Q |
101 |
ctcactcttatttccagttgtttcttcctcagcagtgacatttaatataccatctgcatcgatagcaaaacatactttgatgcaaaggccacggggagca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29578546 |
ctcactcttatttccagttgtttcttcctcagcagtgacatttaatataccatctgcatcgatagcaaaacatactttgatgcaaaggccacggggagca |
29578447 |
T |
|
| Q |
201 |
ggaggaacaaagagacgaaacaaacccaacaagtt |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
29578446 |
ggaggaacaaagagacgaaacaaacccaacaagtt |
29578412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 29582810 - 29582581
Alignment:
| Q |
6 |
aacttcatatcttcaaccttgaatttctcaccttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcac |
105 |
Q |
| |
|
||||||| ||||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||| | ||||| ||| ||||||||||||| ||||| |
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| T |
29582810 |
aacttcagatcttcaaccttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctctt |
29582711 |
T |
|
| Q |
106 |
tcttatttccagttgtttcttcctcagcagtgacatttaatataccatctgcatcgatagcaaaacatactttgatgcaaaggccacggggagcaggagg |
205 |
Q |
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| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| | |||||| || |||||| |||| |
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| T |
29582710 |
ttttatttccagtggtttcttcctcagcagtgacatttagtataccatctgcatctatagcaaagcatactttgatacgaaggccgcgaggagcacgagg |
29582611 |
T |
|
| Q |
206 |
aacaaagagacgaaacaaacccaacaagtt |
235 |
Q |
| |
|
|| ||||||| ||||||||||| |||||| |
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| T |
29582610 |
aattaagagactaaacaaacccagcaagtt |
29582581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 177
Target Start/End: Original strand, 8609137 - 8609290
Alignment:
| Q |
24 |
ttgaatttctcaccttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgttt |
123 |
Q |
| |
|
||||| |||||| ||||||| ||||||| ||||||||||| ||||||||||| | ||| || |||||||| || || || ||||||| ||| | |||| |
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|
| T |
8609137 |
ttgaaattctcagcttcttgaatcattctctcaatttcttcagttgaaagtcgaccattttcctttgttatagtaatatctttcttattaccactggttt |
8609236 |
T |
|
| Q |
124 |
cttcctcagcagtgacatttaatataccatctgcatcgatagcaaaacatactt |
177 |
Q |
| |
|
||||||| |||| |||||||||||||||||| ||||| |||||||| ||||||| |
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|
| T |
8609237 |
cttcctctgcagagacatttaatataccatcagcatctatagcaaagcatactt |
8609290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 7878700 - 7878530
Alignment:
| Q |
5 |
aaacttcatatcttcaaccttgaatttctcaccttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctca |
104 |
Q |
| |
|
||||||||| |||||| |||||| | |||| |||||| ||| ||| ||||||||||| |||| ||||||| ||| ||||| || ||||| || || |
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| T |
7878700 |
aaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttct |
7878601 |
T |
|
| Q |
105 |
ctcttatttccagttgtttcttcctcagcagtgacatttaatataccatctgcatcgatagcaaaacatac |
175 |
Q |
| |
|
|||| || ||| |||||||||||| || | |||||||||||||||||| ||||| ||| |||||||||| |
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|
| T |
7878600 |
ttcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctatatcaaaacatac |
7878530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 8589842 - 8590009
Alignment:
| Q |
8 |
cttcatatcttcaaccttgaatttctcaccttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactc |
107 |
Q |
| |
|
|||||| |||||| ||||||| | |||| |||| |||||||||| ||||||||||| ||| ||||||| ||| ||||| |||||||| || | | |
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|
| T |
8589842 |
cttcatgtcttcagccttgaagtgctcagcttcctggatcattctctcaatttcttcgcttgtcagtcttccattttcattggttattgtaatatttttt |
8589941 |
T |
|
| Q |
108 |
ttatttccagttgtttcttcctcagcagtgacatttaatataccatctgcatcgatagcaaaacatac |
175 |
Q |
| |
|
||||| ||| | ||||||||||||||| || |||||||||||||| ||||| |||| ||| ||||| |
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|
| T |
8589942 |
ttattaccactgctttcttcctcagcagacacgtttaatataccatcagcatctatagaaaagcatac |
8590009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 8601173 - 8601264
Alignment:
| Q |
6 |
aacttcatatcttcaaccttgaatttctcaccttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgt |
97 |
Q |
| |
|
|||||||| |||||| | ||||| |||||| ||||||||||||||| ||||||||||| ||||| ||||||| || ||||| |||||||| |
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|
| T |
8601173 |
aacttcatgtcttcatctttgaaattctcagcttcttggatcattctctcaatttcttcggttgatagtcttcccttttcattcgttattgt |
8601264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 8383846 - 8383676
Alignment:
| Q |
5 |
aaacttcatatcttcaaccttgaatttctcaccttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctca |
104 |
Q |
| |
|
||||||||| |||||| ||||||| ||||| | ||||||||||||| ||||||||| | |||||| | |||| ||| ||||| ||||||| || || |
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|
| T |
8383846 |
aaacttcatgtcttcagccttgaaattctctgcctcttggatcattctctcaatttcatcagttgataaacttccattttcattctttattgtaatatct |
8383747 |
T |
|
| Q |
105 |
ctcttatttccagttgtttcttcctcagcagtgacatttaatataccatctgcatcgatagcaaaacatac |
175 |
Q |
| |
|
|||||| ||| || ||||| | ||||| |||||||||||||||||| |||| | || ||||||||| |
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|
| T |
8383746 |
tgcttattcccacaggtatcttctttagcagagacatttaatataccatcaacatctacagaaaaacatac |
8383676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 8580960 - 8581074
Alignment:
| Q |
67 |
ttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcagcagtgacatttaatataccatctgcatcgatagc |
166 |
Q |
| |
|
|||||||||||| ||| ||||| |||||||| || | ||||| | || ||||||||||||| |||| |||||||||||||||||| | ||| |||| |
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|
| T |
8580960 |
ttgaaagtcttccattttcattcgttattgtaatagccttcttactagcatttgtttcttcctctgcagagacatttaatataccatcagaatctataga |
8581059 |
T |
|
| Q |
167 |
aaaacatactttgat |
181 |
Q |
| |
|
||| ||| ||||||| |
|
|
| T |
8581060 |
aaagcattctttgat |
8581074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 176
Target Start/End: Original strand, 8544835 - 8545005
Alignment:
| Q |
6 |
aacttcatatcttcaaccttgaatttctcaccttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcac |
105 |
Q |
| |
|
|||||||| |||| | ||||||| || ||| |||| |||||||||| ||||||||||| |||| | ||||| ||| ||| | |||||||| || ||| |
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|
| T |
8544835 |
aacttcatgtcttgagccttgaaattgtcagcttcctggatcattctctcaatttcttcccttgataatcttccattttcaatagttattgtaatttcat |
8544934 |
T |
|
| Q |
106 |
tcttatttccagttgtttcttcctcagcagtgacatttaatataccatctgcatcgatagcaaaacatact |
176 |
Q |
| |
|
||||| | ||| | |||||||| |||| ||| ||||||| ||||| ||||| |||||||| |||||| |
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|
| T |
8544935 |
tcttactaccactggtttcttctgttgcagagacgtttaataaaccattagcatctatagcaaagcatact |
8545005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 177
Target Start/End: Original strand, 12527706 - 12527877
Alignment:
| Q |
6 |
aacttcatatcttcaaccttgaatttctcaccttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcac |
105 |
Q |
| |
|
||||||||||||||| ||||||| |||||| |||| |||||||||| | ||||||||| | |||| | ||||| ||| |||||||||||||| || || |
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|
| T |
12527706 |
aacttcatatcttcagccttgaaattctcagcttcctggatcattctcccaatttcttcacttgataatcttccattttcatttgttattgtaatatctt |
12527805 |
T |
|
| Q |
106 |
tcttatttccagttgtttcttcctcagcagtgacatttaatataccatctgcatcgatagcaaaacatactt |
177 |
Q |
| |
|
||||||| ||| | |||| ||||| |||| ||| ||||||||||| || ||||| |||||||| ||||||| |
|
|
| T |
12527806 |
tcttattaccactggttttttccttcgcagagacttttaatataccgtcagcatctatagcaaagcatactt |
12527877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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