View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2030_low_44 (Length: 230)
Name: NF2030_low_44
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2030_low_44 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 52202668 - 52202869
Alignment:
| Q |
20 |
agcaccatagtactttccaatgccaccaataactgcaacatgtgactcaaagacatcactcctatgaactccaaaaagtctcaacccgtcttcatactca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52202668 |
agcaccatagtactttccaatgccaccaataactgcaacatgtgactcaaagacatcactcctatgaactccaaaaagtctcaacccgtcttcatactca |
52202767 |
T |
|
| Q |
120 |
cctttcagaaaactcactgtcatagcaaccatatggctacttgcatcctcttcactagctacatataccccttgtgcttttccaagtttctttagttcat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52202768 |
cctttcagaaaactcactgtcatagcaaccatatggctacttgcatcctcttcactagctacatataccccttgtgcttttccaagtttctttagttcat |
52202867 |
T |
|
| Q |
220 |
ct |
221 |
Q |
| |
|
|| |
|
|
| T |
52202868 |
ct |
52202869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University