View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2030_low_46 (Length: 227)

Name: NF2030_low_46
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2030_low_46
NF2030_low_46
[»] chr2 (2 HSPs)
chr2 (1-209)||(33369333-33369541)
chr2 (79-209)||(33362992-33363122)
[»] chr1 (4 HSPs)
chr1 (1-198)||(41425670-41425873)
chr1 (79-209)||(41452990-41453120)
chr1 (74-209)||(41431162-41431297)
chr1 (75-178)||(41441811-41441914)
[»] scaffold0648 (1 HSPs)
scaffold0648 (1-209)||(5159-5373)
[»] scaffold0274 (2 HSPs)
scaffold0274 (1-209)||(18085-18299)
scaffold0274 (74-128)||(13707-13761)
[»] chr7 (1 HSPs)
chr7 (91-209)||(7763517-7763635)


Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 33369333 - 33369541
Alignment:
Q  1 cttgaagccattgatgaggacgtgcttggtaaaaccggtgttctcaaatcttccaggcgtaagagagcagctgccccaggtttgacaatcactgatgaac 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33369333 cttgaagccattgatgaggacgtgcttggtaaaaccggagttctcaaatcttccaggcgtaagagagcagctgccccaggtttgacaatcactgatgaac 33369432  T
Q  101 ccgaaaatgaaactcttaggaaacttcgaagttttaagcaatttgacactgtcactgacacctcagaccatcactttaataaaagtaattcctccatgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33369433 ccgaaaatgaaactcttaggaaacttcgaagttttaagcaatttgacactgtcactgacacctcagaccattactttaataaaagtaattcctccatgaa 33369532  T
Q  201 gcaggttag 209  Q
    |||||||||    
T  33369533 gcaggttag 33369541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 33362992 - 33363122
Alignment:
Q  79 ggtttgacaatcactgatgaacccgaaaatgaaactcttaggaaacttcgaagttttaagcaatttgacactgtcactgacacctcagaccatcacttta 178  Q
    ||||| ||| ||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||    
T  33362992 ggttttacagtcactcatgaacccgaaaatgaaaccctgaggaaacttcgaagttttaagcaatttgacactgttactgacacttcagaccattacttta 33363091  T
Q  179 ataaaagtaattcctccatgaagcaggttag 209  Q
     ||||| ||||| |||| |||||||||||||    
T  33363092 ttaaaaataattgctccgtgaagcaggttag 33363122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 41425670 - 41425873
Alignment:
Q  1 cttgaagccattgatgaggacgtgcttggtaaaaccggtgttctcaaatcttccagg------cgtaagagagcagctgccccaggtttgacaatcactg 94  Q
    ||||||||| || |||||||||||||||||||| | ||||||||||  ||| ||||       |||||||||||||||||| || |||||||||||||||    
T  41425670 cttgaagccgttcatgaggacgtgcttggtaaagctggtgttctcacgtctgccagagctagacgtaagagagcagctgcctcaagtttgacaatcactg 41425769  T
Q  95 atgaacccgaaaatgaaactcttaggaaacttcgaagttttaagcaatttgacactgtcactgacacctcagaccatcactttaataaaagtaattcctc 194  Q
    |||||||||||||||||||||| || |||||| ||||||||||||||||||||||| ||| |||||| ||||||||| |||||| ||||||| |||||||    
T  41425770 atgaacccgaaaatgaaactctgagaaaacttggaagttttaagcaatttgacactatcagtgacacttcagaccattactttattaaaagtcattcctc 41425869  T
Q  195 catg 198  Q
    ||||    
T  41425870 catg 41425873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 41452990 - 41453120
Alignment:
Q  79 ggtttgacaatcactgatgaacccgaaaatgaaactcttaggaaacttcgaagttttaagcaatttgacactgtcactgacacctcagaccatcacttta 178  Q
    ||||||| ||||||||||||||||||||| |||||||| | ||||||||||||||||||| ||||||||| |||||||||||| ||||||||| | ||||    
T  41452990 ggtttgagaatcactgatgaacccgaaaacgaaactctgaagaaacttcgaagttttaagtaatttgacattgtcactgacacttcagaccattatttta 41453089  T
Q  179 ataaaagtaattcctccatgaagcaggttag 209  Q
     ||||| ||||||||||||||||||||||||    
T  41453090 gtaaaaataattcctccatgaagcaggttag 41453120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 74 - 209
Target Start/End: Original strand, 41431162 - 41431297
Alignment:
Q  74 ccccaggtttgacaatcactgatgaacccgaaaatgaaactcttaggaaacttcgaagttttaagcaatttgacactgtcactgacacctcagaccatca 173  Q
    |||| ||||||||||||||||||||||| |||||||||||||| | |||||||||||| ||||||||||||||| ||||| | ||||  || |||||| |    
T  41431162 ccccgggtttgacaatcactgatgaacctgaaaatgaaactctgaagaaacttcgaagctttaagcaatttgacgctgtcgcggacagttcggaccatta 41431261  T
Q  174 ctttaataaaagtaattcctccatgaagcaggttag 209  Q
    ||||| ||||| | ||||||||||||||||||||||    
T  41431262 ctttattaaaaatcattcctccatgaagcaggttag 41431297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 75 - 178
Target Start/End: Original strand, 41441811 - 41441914
Alignment:
Q  75 cccaggtttgacaatcactgatgaacccgaaaatgaaactcttaggaaacttcgaagttttaagcaatttgacactgtcactgacacctcagaccatcac 174  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||  ||||||||| ||    
T  41441811 cccagatttgacaatcactgatgaacccgaaaatgaaactctgaggaaacttcaaagttttaagcaatttgacactgtcaccgacatttcagaccataac 41441910  T
Q  175 ttta 178  Q
    ||||    
T  41441911 ttta 41441914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 5159 - 5373
Alignment:
Q  1 cttgaagccattgatgaggacgtgcttggtaaaaccggtgttctcaaatcttccagg------cgtaagagagcagctgccccaggtttgacaatcactg 94  Q
    ||||||||| || |||||||||||||||||||| | ||||||||||  ||| ||||       |||||||||||||||||| || |||||||||||||||    
T  5159 cttgaagccgttcatgaggacgtgcttggtaaagctggtgttctcacgtctgccagagctagacgtaagagagcagctgcctcaagtttgacaatcactg 5258  T
Q  95 atgaacccgaaaatgaaactcttaggaaacttcgaagttttaagcaatttgacactgtcactgacacctcagaccatcactttaataaaagtaattcctc 194  Q
    |||||||||||||||||||||| || |||||| ||||||||||||||||||||||| ||| |||||| || |||||| |||||| ||||||| |||||||    
T  5259 atgaacccgaaaatgaaactctgagaaaacttggaagttttaagcaatttgacactatcagtgacacttcggaccattactttattaaaagtcattcctc 5358  T
Q  195 catgaagcaggttag 209  Q
    ||||  |||||||||    
T  5359 catggcgcaggttag 5373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 18299 - 18085
Alignment:
Q  1 cttgaagccattgatgaggacgtgcttggtaaaaccggtgttctcaaatcttccagg------cgtaagagagcagctgccccaggtttgacaatcactg 94  Q
    ||||||||| || |||||||||||||||||||| | ||||||||||  ||| ||||       |||||||||||||||||| || |||||||||||||||    
T  18299 cttgaagccgttcatgaggacgtgcttggtaaagctggtgttctcacgtctgccagagctagacgtaagagagcagctgcctcaagtttgacaatcactg 18200  T
Q  95 atgaacccgaaaatgaaactcttaggaaacttcgaagttttaagcaatttgacactgtcactgacacctcagaccatcactttaataaaagtaattcctc 194  Q
    |||||||||||||||||||||| || |||||| ||||||||||||||||||||||| ||| |||||| || |||||| |||||| ||||||| |||||||    
T  18199 atgaacccgaaaatgaaactctgagaaaacttggaagttttaagcaatttgacactatcagtgacacttcggaccattactttattaaaagtcattcctc 18100  T
Q  195 catgaagcaggttag 209  Q
    ||||  |||||||||    
T  18099 catggcgcaggttag 18085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 13761 - 13707
Alignment:
Q  74 ccccaggtttgacaatcactgatgaacccgaaaatgaaactcttaggaaacttcg 128  Q
    |||| ||||||||||||||||||||||| |||||||||||||| | |||||||||    
T  13761 ccccgggtttgacaatcactgatgaacctgaaaatgaaactctgaagaaacttcg 13707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 7763635 - 7763517
Alignment:
Q  91 actgatgaacccgaaaatgaaactcttaggaaacttcgaagttttaagcaatttgacactgtcactgacacctcagaccatcactttaataaaagtaatt 190  Q
    |||||| |||| |||| ||||||||| |||||||||| |||||||||||||||||||||||||| |||||  ||||||||||||| || |||||  ||||    
T  7763635 actgataaaccagaaagtgaaactctgaggaaacttcaaagttttaagcaatttgacactgtcattgacatttcagaccatcactatattaaaaaaaatt 7763536  T
Q  191 cctccatgaagcaggttag 209  Q
    | ||||||||||| |||||    
T  7763535 cttccatgaagcatgttag 7763517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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