View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2030_low_5 (Length: 488)
Name: NF2030_low_5
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2030_low_5 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: scaffold0200 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 30713 - 31180
Alignment:
| Q |
1 |
ctgctccacaatgtagaataatgagtgtatgaagcaccaaaacaaatacgaatacttaaaacgacaattacactgacgcggcaataataatattttgaga |
100 |
Q |
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| T |
30713 |
ctgctccacaatgtagaataatgagtgtatgaagcaccgaaacaaatacgaatacttaaaacgacaattacactgacgcggcaataataatattttgaga |
30812 |
T |
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| Q |
101 |
aatagaagaaattaaatataatgtatttgtgttgcgccggtgtccgacaccgacacatgtcaaacactatactcatatttaatctaaagtgtcagtgcta |
200 |
Q |
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| T |
30813 |
aatagaagaaattaaatataatgtatttgtgtcgtgccggtgtccgacaccgacacatgtcaaacactatactcatatttaatctaaagtgtcagtgcta |
30912 |
T |
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| Q |
201 |
cataatataaataccaagaaaaatttaaatgtgaaaaatcaatctattcatacctttagtaaattggcaatataagtttgtggtgggttaactccattcc |
300 |
Q |
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| T |
30913 |
cataatataaatactaagaaaaatttaaatgtgaaaaatcaatctattcatacctttagtaaattggcaatataagtttgtggtgggttaactccattcc |
31012 |
T |
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| Q |
301 |
aatcataatggtgttctggtacagtgaagtattcttcaacaaaaggggttgtgtcaacaaagaaaatctcaaccagctctgcacaagaacaaaaatatac |
400 |
Q |
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| T |
31013 |
aatcataatggtgttctggtacagtgaagtattcttcaacaaaaggggttgtgtcaacaaagaaaatctcaaccagctctgcacaagaacaaaaatatac |
31112 |
T |
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| Q |
401 |
atttagaaagnnnnnnnnctacatgaacatgatttttaagcatttcattaacttgaaaataacatgcaaca |
471 |
Q |
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| T |
31113 |
a-taagaaa--aaaaaaactacatgaacatgatttttaaacatttcattaacttgaaaataacatgcaaca |
31180 |
T |
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