View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2030_low_6 (Length: 483)
Name: NF2030_low_6
Description: NF2030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2030_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 126 - 444
Target Start/End: Complemental strand, 38284512 - 38284194
Alignment:
| Q |
126 |
atttgatttgatgaatgtttgagtaatatgcatgatgatatatatagtgcaaataaaatagcaaacagcgggctgccgcgtatttgataattgtatatgt |
225 |
Q |
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| T |
38284512 |
atttgatttgatgaatgtttgagtaatatgcatgatgatatatatagtgcaaataaaatagcaaacagcgggctgccgcgtatttgataaatgtatatgt |
38284413 |
T |
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| Q |
226 |
tgtgggaggagatggggggttttggaactatgtgtaagaattattgagttatcacctcgggttatggtgtctacatggtgatggtgacgatgaaatatgt |
325 |
Q |
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| T |
38284412 |
tgtggggggagatggggggttttggaactatgtgtaagaattattgagttatcacctcgggttatggtgtctacatggtgatggtgacgatgaaatatgt |
38284313 |
T |
|
| Q |
326 |
aaattactgcctctggtccacgcttgatgcgtaatcgtttgtttggtgtttttgttagaggctgatacgtggattcatttccttcacgcattgccacgtt |
425 |
Q |
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| T |
38284312 |
aaattactgcctctggtccacgcttgatgcgtaatcgtttgtttggtgtttttgttagaggctgatacgtggattcatttccttcacacattgccacgtt |
38284213 |
T |
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| Q |
426 |
tggagtaatatgcatgcat |
444 |
Q |
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| T |
38284212 |
tggagtaatatgcatgcat |
38284194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 38284612 - 38284512
Alignment:
| Q |
1 |
ccacacgacgccgttgagaggaggcagagcaaggtagttattacaattgttaaagtcatagccatcatcaaaacgatgaataatatattaaactttttct |
100 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38284612 |
ccacacgacgccgttgagaggatgcagagcaaggtggttattacaattgttaaagtcatagccatcatcaaaacgatgaataatatattaaactttttct |
38284513 |
T |
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| Q |
101 |
a |
101 |
Q |
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| T |
38284512 |
a |
38284512 |
T |
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