View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20310_high_7 (Length: 312)

Name: NF20310_high_7
Description: NF20310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20310_high_7
NF20310_high_7
[»] scaffold1052 (3 HSPs)
scaffold1052 (140-266)||(771-897)
scaffold1052 (1-141)||(585-738)
scaffold1052 (264-300)||(962-998)
[»] chr2 (3 HSPs)
chr2 (139-266)||(6182526-6182653)
chr2 (1-141)||(6182347-6182497)
chr2 (264-300)||(6182718-6182754)
[»] chr1 (3 HSPs)
chr1 (139-266)||(5101261-5101386)
chr1 (1-141)||(5101080-5101232)
chr1 (264-300)||(5101451-5101487)
[»] chr3 (3 HSPs)
chr3 (139-266)||(32356299-32356427)
chr3 (1-132)||(32356120-32356261)
chr3 (264-300)||(32356492-32356528)
[»] scaffold0268 (2 HSPs)
scaffold0268 (20-84)||(20445-20509)
scaffold0268 (139-193)||(20592-20646)
[»] chr7 (1 HSPs)
chr7 (21-84)||(10200413-10200476)


Alignment Details
Target: scaffold1052 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 140 - 266
Target Start/End: Original strand, 771 - 897
Alignment:
Q  140 aaataggacacacaaattcattgttgttgttgttgtgggtaaagtggaaaaggaatatgtgttttaaaacttggctttttggtttgatgttggaatctgg 239  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||    
T  771 aaataggacacacaaattcattgttgttgttgttagaggtaaagtggaaaaggaatatgtgttttaaaacttgtttttttggtttgatgttggaatatgg 870  T
Q  240 attcgaaacagcgttgtacccatgtcc 266  Q
    |||||||||||||||||||||||||||    
T  871 attcgaaacagcgttgtacccatgtcc 897  T

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Target: scaffold1052; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 585 - 738
Alignment:
Q  1 ctataaacatatggtttttcaatttcatctcattcctttgtcatctcaatcaaattaaattataga-------------aattattaatggatatacgtc 87  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||             ||| |||||||||||||||||    
T  585 ctataaacatatggtttttcaatttcatctcattcctttgttatttcaatcaaattaaactatagaaatcattaaggccaatcattaatggatatacgtc 684  T
Q  88 tctcattgagttttgtaaaacttgagttttaattaattcaatttgggctttcaa 141  Q
    | |||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  685 tttcattgagttttgtaaaacttgagatttaattaattcaatttggactttcaa 738  T

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Target: scaffold1052; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 962 - 998
Alignment:
Q  264 tcctcgtcactccagtgttccgtttgcttctcttcat 300  Q
    |||||||||||||||||||||||||||||||||||||    
T  962 tcctcgtcactccagtgttccgtttgcttctcttcat 998  T

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Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 139 - 266
Target Start/End: Original strand, 6182526 - 6182653
Alignment:
Q  139 caaataggacacacaaattcattgttgttgttgttgtgggtaaagtggaaaaggaatatgtgttttaaaacttggctttttggtttgatgttggaatctg 238  Q
    ||||||||||||||||||||||||||||||||||||  |||| |||| ||||||||||||||||||||||||||  ||||||||||||||||||||| ||    
T  6182526 caaataggacacacaaattcattgttgttgttgttgaaggtagagtgaaaaaggaatatgtgttttaaaacttgtttttttggtttgatgttggaatatg 6182625  T
Q  239 gattcgaaacagcgttgtacccatgtcc 266  Q
    ||||||||||||||||||||||||||||    
T  6182626 gattcgaaacagcgttgtacccatgtcc 6182653  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 6182347 - 6182497
Alignment:
Q  1 ctataaacatatggtttttcaatttcatctcattcctttgtcatctcaatcaaattaaattatagaaattattaatggata----------tacgtctct 90  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |   |          ||||||| |    
T  6182347 ctataaacatatgatttttcaatttcatctcattcctttgttatctcaatcaaattaaattatagaaatcattaaggccaatcattaatggtacgtctgt 6182446  T
Q  91 cattgagttttgtaaaacttgagttttaattaattcaatttgggctttcaa 141  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  6182447 cattgagttttgtaaaacttgagttttaattaattcaatttgaactttcaa 6182497  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 6182718 - 6182754
Alignment:
Q  264 tcctcgtcactccagtgttccgtttgcttctcttcat 300  Q
    |||||||||||||||||||||||||||||||||||||    
T  6182718 tcctcgtcactccagtgttccgtttgcttctcttcat 6182754  T

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Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 139 - 266
Target Start/End: Original strand, 5101261 - 5101386
Alignment:
Q  139 caaataggacacacaaattcattgttgttgttgttgtgggtaaagtggaaaaggaatatgtgttttaaaacttggctttttggtttgatgttggaatctg 238  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||  |||||||||||||||  ||||||||||||||||||||||||    
T  5101261 caaataggacacacaaattcattgttgttgttgttgaaggtaaagtggaaaaggaat--gtgttttaaaacttgtttttttggtttgatgttggaatctg 5101358  T
Q  239 gattcgaaacagcgttgtacccatgtcc 266  Q
    |||||| |||||| ||||||||||||||    
T  5101359 gattcggaacagcattgtacccatgtcc 5101386  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 5101080 - 5101232
Alignment:
Q  1 ctataaacatatggtttttcaatttcatctcattcctttgtcatctcaatcaaattaaattataga-------------aattattaatggatatacgtc 87  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||             ||| |||||||||||||||||    
T  5101080 ctataaacatatggtttttcaatttcatctcattcctttgttatctcaatcaaattaaattatagaaatcattaaggccaatcattaatggatatacgtc 5101179  T
Q  88 tctcattgagttttgtaaaacttgagttttaattaattcaatttgggctttcaa 141  Q
      |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5101180 -gtcattgagttttgtaaaacttgagttttaattaattcaatttggactttcaa 5101232  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 5101451 - 5101487
Alignment:
Q  264 tcctcgtcactccagtgttccgtttgcttctcttcat 300  Q
    |||||||||||||||||||||||||||||||||||||    
T  5101451 tcctcgtcactccagtgttccgtttgcttctcttcat 5101487  T

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Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 139 - 266
Target Start/End: Original strand, 32356299 - 32356427
Alignment:
Q  139 caaataggacacacaaattcattgttgttgttgttgtgggtaaagtggaaaaggaatatgtgttttaaaacttg-gctttttggtttgatgttggaatct 237  Q
    ||||||||||||||||||||||||||||||||||||  |||| |||| ||||||||||||||||||||||||||   ||||| ||||||| |||||||||    
T  32356299 caaataggacacacaaattcattgttgttgttgttgaaggtagagtgaaaaaggaatatgtgttttaaaacttgtttttttttgtttgattttggaatct 32356398  T
Q  238 ggattcgaaacagcgttgtacccatgtcc 266  Q
    |||||||||||||||||||||||||||||    
T  32356399 ggattcgaaacagcgttgtacccatgtcc 32356427  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 32356120 - 32356261
Alignment:
Q  1 ctataaacatatggtttttcaatttcatctcattcctttgtcatctcaatcaaattaaattatagaaattattaatggata----------tacgtctct 90  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |   |          ||||||| |    
T  32356120 ctataaacatatgatttttcaatttcatctcattcctttgttatctcaatcaaattaaattatagaaatcattaaggccaatcattaatggtacgtctgt 32356219  T
Q  91 cattgagttttgtaaaacttgagttttaattaattcaatttg 132  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  32356220 cattgagttttgtaaaacttaagttttaattaattcaatttg 32356261  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 32356492 - 32356528
Alignment:
Q  264 tcctcgtcactccagtgttccgtttgcttctcttcat 300  Q
    |||||||||||||||||||| ||||||||||||||||    
T  32356492 tcctcgtcactccagtgttctgtttgcttctcttcat 32356528  T

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Target: scaffold0268 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 20445 - 20509
Alignment:
Q  20 caatttcatctcattcctttgtcatctcaatcaaattaaattatagaaattattaatggatatac 84  Q
    |||||||||| | ||||||||| ||||||| ||||||  ||||||||||| ||||||||||||||    
T  20445 caatttcatccccttcctttgttatctcaaacaaattggattatagaaatcattaatggatatac 20509  T

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Target: scaffold0268; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 20592 - 20646
Alignment:
Q  139 caaataggacacacaaattcattgttgttgttgttgtgggtaaagtggaaaagga 193  Q
    |||||||||||||||| | |||||||||||||||||   ||||| ||||||||||    
T  20592 caaataggacacacaattccattgttgttgttgttggaagtaaaatggaaaagga 20646  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 10200476 - 10200413
Alignment:
Q  21 aatttcatctcattcctttgtcatctcaatcaaattaaattatagaaattattaatggatatac 84  Q
    ||||||||| | ||||||||| ||||||| ||||||  ||||||||||| ||||||||||||||    
T  10200476 aatttcatccccttcctttgttatctcaaacaaattggattatagaaatcattaatggatatac 10200413  T

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