View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20311_high_5 (Length: 237)

Name: NF20311_high_5
Description: NF20311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20311_high_5
NF20311_high_5
[»] chr3 (4 HSPs)
chr3 (137-222)||(8419961-8420046)
chr3 (1-45)||(8420053-8420097)
chr3 (28-93)||(4806162-4806227)
chr3 (35-74)||(29787565-29787605)
[»] chr7 (10 HSPs)
chr7 (32-83)||(9651693-9651744)
chr7 (33-74)||(12678221-12678263)
chr7 (35-85)||(21808718-21808768)
chr7 (33-86)||(28009452-28009504)
chr7 (41-85)||(21800383-21800427)
chr7 (25-67)||(16650754-16650796)
chr7 (25-67)||(17625114-17625156)
chr7 (25-66)||(36337799-36337840)
chr7 (28-69)||(44109622-44109663)
chr7 (25-69)||(29655788-29655832)
[»] chr4 (4 HSPs)
chr4 (32-83)||(13522718-13522769)
chr4 (32-88)||(44101349-44101405)
chr4 (32-76)||(12226790-12226834)
chr4 (36-74)||(14089163-14089202)
[»] scaffold0001 (1 HSPs)
scaffold0001 (25-89)||(502978-503042)
[»] chr2 (3 HSPs)
chr2 (23-77)||(5304992-5305046)
chr2 (28-69)||(20529063-20529104)
chr2 (87-119)||(5304921-5304953)
[»] chr8 (3 HSPs)
chr8 (25-79)||(22842640-22842694)
chr8 (87-120)||(22842571-22842604)
chr8 (25-66)||(32108202-32108243)
[»] chr6 (3 HSPs)
chr6 (28-66)||(11117008-11117046)
chr6 (25-67)||(22961743-22961785)
chr6 (25-67)||(23826608-23826650)
[»] chr5 (1 HSPs)
chr5 (25-67)||(26603907-26603949)


Alignment Details
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 8420046 - 8419961
Alignment:
Q  137 gagcatcttgttaaaaattgtcggaatctaaacttacctcaaaatgacttaagtcatgttgactttatatttaggtgacttaactt 222  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||| ||| ||| |||||||||||    
T  8420046 gagcatcttgttaaaaattgtcggaatctaaacttatcccaaaatgacttaagtcacgttgactttgtatctagatgacttaactt 8419961  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8420097 - 8420053
Alignment:
Q  1 catataattaaggatggtcaaaatttgatttcgcgtacttgtgta 45  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  8420097 catataattaaggatgatcaaaatttgatttcgcgtacttgtgta 8420053  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 4806162 - 4806227
Alignment:
Q  28 atttcgcgtacttgtgtatttttagttatgatttattttggatcatgaatgagttgatgtttaaaa 93  Q
    ||||| ||| |||| ||||||||||| |||||||||||||||||||||||||  |||| |||||||    
T  4806162 atttcacgtgcttgcgtatttttagtaatgatttattttggatcatgaatgaaatgatctttaaaa 4806227  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 29787605 - 29787565
Alignment:
Q  35 gtacttgtgtattttta-gttatgatttattttggatcatg 74  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  29787605 gtacttgtgtatttttaagttatgatttattttggatcatg 29787565  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 9651744 - 9651693
Alignment:
Q  32 cgcgtacttgtgtatttttagttatgatttattttggatcatgaatgagttg 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9651744 cgcgtacttgtgtatttttagttatgatttattttggatcatgaatgagttg 9651693  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 12678263 - 12678221
Alignment:
Q  33 gcgtacttgtgtattttta-gttatgatttattttggatcatg 74  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  12678263 gcgtacttgtgtatttttaagttatgatttattttggatcatg 12678221  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 21808768 - 21808718
Alignment:
Q  35 gtacttgtgtatttttagttatgatttattttggatcatgaatgagttgat 85  Q
    |||||| ||||||||||||  |||||||||||||||||||||||| |||||    
T  21808768 gtacttatgtatttttagtcctgatttattttggatcatgaatgaattgat 21808718  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 28009452 - 28009504
Alignment:
Q  33 gcgtacttgtgtatttttagttatgatttattttggatcatgaatgagttgatg 86  Q
    |||||||| ||||||||||||||||||||||||||||  |||||||| ||||||    
T  28009452 gcgtacttatgtatttttagttatgatttattttgga-aatgaatgaattgatg 28009504  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 21800427 - 21800383
Alignment:
Q  41 gtgtatttttagttatgatttattttggatcatgaatgagttgat 85  Q
    |||||||||||||  |||||||||||||||||||||||| |||||    
T  21800427 gtgtatttttagtgttgatttattttggatcatgaatgaattgat 21800383  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 16650796 - 16650754
Alignment:
Q  25 ttgatttcgcgtacttgtgtatttttagttatgatttattttg 67  Q
    ||||||| | ||||||||||||||||||||| |||||||||||    
T  16650796 ttgattttgtgtacttgtgtatttttagttaggatttattttg 16650754  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 17625156 - 17625114
Alignment:
Q  25 ttgatttcgcgtacttgtgtatttttagttatgatttattttg 67  Q
    ||||||| | ||||||||||||||||||||| |||||||||||    
T  17625156 ttgattttgtgtacttgtgtatttttagttaggatttattttg 17625114  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 36337840 - 36337799
Alignment:
Q  25 ttgatttcgcgtacttgtgtatttttagttatgatttatttt 66  Q
    ||||||| |||| |||||||||||||||||| ||||||||||    
T  36337840 ttgattttgcgtgcttgtgtatttttagttaggatttatttt 36337799  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 44109663 - 44109622
Alignment:
Q  28 atttcgcgtacttgtgtatttttagttatgatttattttgga 69  Q
    |||| ||| |||||| ||||||||||||||||||||||||||    
T  44109663 attttgcgcacttgtatatttttagttatgatttattttgga 44109622  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 29655832 - 29655788
Alignment:
Q  25 ttgatttcgcgtacttgtgtatttttagttatgatttattttgga 69  Q
    ||||||| |||||||||||||||||||||||  | ||||||||||    
T  29655832 ttgattttgcgtacttgtgtatttttagttagaagttattttgga 29655788  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 13522769 - 13522718
Alignment:
Q  32 cgcgtacttgtgtatttttagttatgatttattttggatcatgaatgagttg 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13522769 cgcgtacttgtgtatttttagttatgatttattttggatcatgaatgagttg 13522718  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 44101349 - 44101405
Alignment:
Q  32 cgcgtacttgtgtatttttagttatgatttattttggatcatgaatgagttgatgtt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  44101349 cgcgtacttgtgtatttttagttatgatttattttggatcatgaatgaattgttgtt 44101405  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 12226834 - 12226790
Alignment:
Q  32 cgcgtacttgtgtatttttagttatgatttattttggatcatgaa 76  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  12226834 cgcgtacttgtgtttttttagttatgatttattttggatcatgaa 12226790  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 14089202 - 14089163
Alignment:
Q  36 tacttgtgtattttta-gttatgatttattttggatcatg 74  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  14089202 tacttgtgtatttttaagttatgatttattttggatcatg 14089163  T

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Target: scaffold0001 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 502978 - 503042
Alignment:
Q  25 ttgatttcgcgtacttgtgtatttttagttatgatttattttggatcatgaatgagttgatgttt 89  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||    
T  502978 ttgatttcgtgtacttgtgtatttttagttatgatttattttggatcgtgaatgaattgttgttt 503042  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 5305046 - 5304992
Alignment:
Q  23 atttgatttcgcgtacttgtgtatttttagttatgatttattttggatcatgaat 77  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  5305046 atttgatttcgtgtacttatgtatttttagttatgatttattttggatcatgaat 5304992  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 20529104 - 20529063
Alignment:
Q  28 atttcgcgtacttgtgtatttttagttatgatttattttgga 69  Q
    |||| ||||||||||||||||||||||| |||||||||||||    
T  20529104 attttgcgtacttgtgtatttttagttaggatttattttgga 20529063  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 119
Target Start/End: Complemental strand, 5304953 - 5304921
Alignment:
Q  87 tttaaaaaatgaaaataacatattgtaagtttg 119  Q
    ||||||||||||||||||||||||||| |||||    
T  5304953 tttaaaaaatgaaaataacatattgtatgtttg 5304921  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 22842694 - 22842640
Alignment:
Q  25 ttgatttcgcgtacttgtgtatttttagttatgatttattttggatcatgaatga 79  Q
    ||||||||  ||||||||||||||||||||||||||||||||  |||||||||||    
T  22842694 ttgatttcatgtacttgtgtatttttagttatgatttattttttatcatgaatga 22842640  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 22842604 - 22842571
Alignment:
Q  87 tttaaaaaatgaaaataacatattgtaagtttgg 120  Q
    ||||||||||||||||||||||||||| ||||||    
T  22842604 tttaaaaaatgaaaataacatattgtatgtttgg 22842571  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 32108243 - 32108202
Alignment:
Q  25 ttgatttcgcgtacttgtgtatttttagttatgatttatttt 66  Q
    ||||||| |||||||||||||||||||||||  |||||||||    
T  32108243 ttgattttgcgtacttgtgtatttttagttaatatttatttt 32108202  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 11117046 - 11117008
Alignment:
Q  28 atttcgcgtacttgtgtatttttagttatgatttatttt 66  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  11117046 attttgcgtatttgtgtatttttagttatgatttatttt 11117008  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 22961785 - 22961743
Alignment:
Q  25 ttgatttcgcgtacttgtgtatttttagttatgatttattttg 67  Q
    ||||||| |||||||| |||||||||||||| |||||||||||    
T  22961785 ttgattttgcgtacttatgtatttttagttaggatttattttg 22961743  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 23826608 - 23826650
Alignment:
Q  25 ttgatttcgcgtacttgtgtatttttagttatgatttattttg 67  Q
    ||||||| |||||||| |||||||||||||| |||||||||||    
T  23826608 ttgattttgcgtacttatgtatttttagttaggatttattttg 23826650  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 26603949 - 26603907
Alignment:
Q  25 ttgatttcgcgtacttgtgtatttttagttatgatttattttg 67  Q
    |||||||  |||||||||||||||||||||| |||||||||||    
T  26603949 ttgattttacgtacttgtgtatttttagttaggatttattttg 26603907  T

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