View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20311_high_6 (Length: 234)

Name: NF20311_high_6
Description: NF20311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20311_high_6
NF20311_high_6
[»] chr3 (21 HSPs)
chr3 (92-233)||(8420251-8420392)
chr3 (92-226)||(54574867-54575001)
chr3 (177-233)||(52374583-52374639)
chr3 (92-233)||(789862-790002)
chr3 (140-233)||(26279465-26279558)
chr3 (92-233)||(28689401-28689541)
chr3 (179-226)||(43207340-43207387)
chr3 (179-226)||(53506987-53507034)
chr3 (179-226)||(54407260-54407307)
chr3 (180-233)||(29598033-29598086)
chr3 (93-154)||(34290677-34290738)
chr3 (111-233)||(49393016-49393137)
chr3 (93-154)||(50939274-50939335)
chr3 (177-233)||(36179625-36179681)
chr3 (179-226)||(34290739-34290786)
chr3 (179-226)||(44708433-44708480)
chr3 (184-233)||(42453337-42453386)
chr3 (93-154)||(44708481-44708542)
chr3 (92-164)||(25855416-25855488)
chr3 (112-160)||(32319215-32319263)
chr3 (93-153)||(37168372-37168432)
[»] chr8 (25 HSPs)
chr8 (92-233)||(7944562-7944703)
chr8 (113-233)||(15167476-15167594)
chr8 (92-233)||(11290106-11290247)
chr8 (100-233)||(34789910-34790043)
chr8 (93-233)||(15078682-15078820)
chr8 (124-233)||(41677246-41677354)
chr8 (116-169)||(25561557-25561610)
chr8 (181-233)||(25561635-25561687)
chr8 (112-164)||(5942687-5942739)
chr8 (180-224)||(8102845-8102889)
chr8 (177-233)||(30674502-30674558)
chr8 (112-211)||(14510041-14510141)
chr8 (179-226)||(23606732-23606779)
chr8 (179-226)||(23798364-23798411)
chr8 (92-166)||(5973147-5973221)
chr8 (93-154)||(42600783-42600844)
chr8 (112-164)||(5721550-5721602)
chr8 (112-164)||(39332465-39332517)
chr8 (179-226)||(10917344-10917391)
chr8 (179-226)||(42600735-42600782)
chr8 (179-226)||(45475770-45475817)
chr8 (183-233)||(38009267-38009317)
chr8 (92-161)||(8102906-8102975)
chr8 (93-154)||(23798302-23798363)
chr8 (181-233)||(8646122-8646174)
[»] chr1 (19 HSPs)
chr1 (92-224)||(38547075-38547207)
chr1 (100-224)||(43235817-43235941)
chr1 (92-233)||(39134762-39134903)
chr1 (92-233)||(5533244-5533386)
chr1 (92-166)||(45758494-45758568)
chr1 (120-169)||(6221675-6221724)
chr1 (124-233)||(26803882-26803990)
chr1 (179-226)||(9181107-9181154)
chr1 (179-226)||(19955681-19955728)
chr1 (179-226)||(44895616-44895663)
chr1 (179-226)||(1366980-1367027)
chr1 (179-226)||(4971720-4971767)
chr1 (179-226)||(9173125-9173172)
chr1 (179-226)||(13913584-13913631)
chr1 (179-226)||(23185391-23185438)
chr1 (92-162)||(38853527-38853596)
chr1 (93-154)||(19955729-19955790)
chr1 (181-217)||(10926079-10926115)
chr1 (182-226)||(17168920-17168964)
[»] chr7 (20 HSPs)
chr7 (100-233)||(17800268-17800401)
chr7 (92-233)||(7398373-7398514)
chr7 (124-233)||(27237494-27237603)
chr7 (113-231)||(23858997-23859115)
chr7 (96-211)||(9021843-9021957)
chr7 (179-226)||(24525787-24525834)
chr7 (181-233)||(26917810-26917862)
chr7 (179-226)||(23551173-23551220)
chr7 (179-226)||(25010386-25010433)
chr7 (179-226)||(38414978-38415025)
chr7 (96-154)||(8239688-8239746)
chr7 (125-233)||(12419567-12419677)
chr7 (112-164)||(12981317-12981369)
chr7 (183-226)||(19692047-19692090)
chr7 (179-226)||(20091383-20091430)
chr7 (179-226)||(47985072-47985119)
chr7 (180-226)||(8239638-8239684)
chr7 (112-162)||(36891571-36891621)
chr7 (112-169)||(6765740-6765797)
chr7 (93-154)||(20091321-20091382)
[»] chr4 (26 HSPs)
chr4 (92-233)||(52468213-52468354)
chr4 (92-233)||(36118497-36118637)
chr4 (93-233)||(24396862-24397001)
chr4 (113-217)||(27111973-27112077)
chr4 (179-233)||(37746847-37746901)
chr4 (182-231)||(2135447-2135496)
chr4 (92-233)||(36178600-36178740)
chr4 (179-226)||(19498462-19498509)
chr4 (179-226)||(32128542-32128589)
chr4 (179-226)||(34027537-34027584)
chr4 (179-226)||(40089474-40089521)
chr4 (181-226)||(16882499-16882544)
chr4 (180-233)||(30507199-30507252)
chr4 (92-164)||(4167930-4168002)
chr4 (92-164)||(10042039-10042111)
chr4 (177-233)||(39329516-39329572)
chr4 (181-233)||(40217157-40217209)
chr4 (182-226)||(54083347-54083391)
chr4 (179-226)||(16844979-16845026)
chr4 (179-226)||(24969395-24969442)
chr4 (179-226)||(38352357-38352404)
chr4 (180-226)||(15735030-15735076)
chr4 (92-154)||(54780783-54780845)
chr4 (93-154)||(37777263-37777324)
chr4 (93-154)||(43455571-43455632)
chr4 (113-165)||(37744970-37745022)
[»] chr2 (21 HSPs)
chr2 (92-233)||(12134080-12134221)
chr2 (92-233)||(37182591-37182732)
chr2 (113-233)||(29694305-29694420)
chr2 (92-169)||(16096993-16097070)
chr2 (95-217)||(21665743-21665865)
chr2 (119-233)||(38400719-38400833)
chr2 (92-158)||(28425750-28425816)
chr2 (92-233)||(24035585-24035726)
chr2 (179-226)||(8327618-8327665)
chr2 (177-223)||(37622466-37622512)
chr2 (177-233)||(10252328-10252385)
chr2 (96-233)||(11912801-11912939)
chr2 (179-226)||(9045981-9046028)
chr2 (179-226)||(10762668-10762715)
chr2 (145-233)||(11952699-11952787)
chr2 (179-226)||(26716080-26716127)
chr2 (179-226)||(27506843-27506890)
chr2 (93-154)||(9046029-9046090)
chr2 (93-154)||(10762606-10762667)
chr2 (93-154)||(24410437-24410498)
chr2 (181-225)||(13800674-13800718)
[»] scaffold1320 (1 HSPs)
scaffold1320 (93-233)||(1278-1416)
[»] scaffold0022 (2 HSPs)
scaffold0022 (92-233)||(40005-40148)
scaffold0022 (92-233)||(138065-138208)
[»] chr5 (20 HSPs)
chr5 (92-233)||(34425825-34425966)
chr5 (92-164)||(36868913-36868985)
chr5 (96-233)||(2024683-2024818)
chr5 (92-226)||(14318422-14318555)
chr5 (100-213)||(33037721-33037835)
chr5 (128-226)||(11242391-11242489)
chr5 (112-169)||(41911674-41911731)
chr5 (92-231)||(15639570-15639706)
chr5 (113-164)||(1366584-1366635)
chr5 (179-226)||(7670877-7670924)
chr5 (179-226)||(16198894-16198941)
chr5 (179-226)||(28822442-28822489)
chr5 (179-226)||(38869463-38869510)
chr5 (182-233)||(40794452-40794503)
chr5 (100-164)||(2530942-2531006)
chr5 (179-226)||(40389636-40389683)
chr5 (118-164)||(2412079-2412125)
chr5 (98-164)||(40794370-40794436)
chr5 (93-154)||(9364292-9364353)
chr5 (180-217)||(22648860-22648897)
[»] chr6 (12 HSPs)
chr6 (113-217)||(2477645-2477749)
chr6 (92-211)||(4036895-4037014)
chr6 (92-233)||(20611715-20611856)
chr6 (100-164)||(21183723-21183787)
chr6 (92-154)||(33774121-33774183)
chr6 (179-226)||(17353910-17353957)
chr6 (179-226)||(19987117-19987164)
chr6 (93-154)||(17353958-17354019)
chr6 (93-154)||(20711761-20711822)
chr6 (93-154)||(27788729-27788790)
chr6 (186-226)||(235335-235375)
chr6 (185-233)||(30121699-30121747)
[»] scaffold0007 (1 HSPs)
scaffold0007 (116-226)||(230923-231033)
[»] scaffold1590 (1 HSPs)
scaffold1590 (92-164)||(298-370)
[»] scaffold0097 (1 HSPs)
scaffold0097 (92-164)||(38916-38988)
[»] scaffold0012 (1 HSPs)
scaffold0012 (92-160)||(206529-206597)
[»] scaffold0039 (1 HSPs)
scaffold0039 (179-226)||(106491-106538)
[»] scaffold0003 (1 HSPs)
scaffold0003 (92-132)||(351374-351414)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 8420392 - 8420251
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacc 191  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||       |||||||||||||||    
T  8420392 caaggtgccgtatatatgttgtacacccaaatgtgaaaatcactgccgtatatacgaggaacctcaaaccaccattccaaaaaaacacccacctaacacc 8420293  T
Q  192 aaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8420292 aaaagcaagagaacccaattctaatatgcctaaaataagaca 8420251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 226
Target Start/End: Original strand, 54574867 - 54575001
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacc 191  Q
    |||||| ||||||||||   ||||||||||| || |||||||||  | |||| ||||||||||||||||| || | ||       ||||||||||||| |    
T  54574867 caaggtaccgtatatatgcggtacacccaaaagtaaaaatcactaccatatacatgaggaacctcaaaccgccctcccaaaaaaacacccacctaacaac 54574966  T
Q  192 aaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    ||||| ||||  || ||||||||||||||||||||    
T  54574967 aaaagtaagatgactcaattctaatatgcctaaaa 54575001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 52374639 - 52374583
Alignment:
Q  177 cacccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    |||||||||||||||||||||||||| || ||||||||||| |||||||| ||||||    
T  52374639 cacccacctaacaccaaaagcaagaggactcaattctaataggcctaaaacaagaca 52374583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 790002 - 789862
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacc 191  Q
    ||||||| | ||||||| ||||||||||||| || ||||||||   | |||| |||||||||||||||||||||  ||       ||| || |||||||     
T  790002 caaggtgtcatatatatgttgtacacccaaaggtaaaaatcaccaccatatacatgaggaacctcaaaccaccaacccaaaaaaacactcatctaacaca 789903  T
Q  192 aaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||| ||||| |||||||||||| | |||||||| ||||||    
T  789902 aaaagtaagaggacccaattctaa-aggcctaaaacaagaca 789862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 26279558 - 26279465
Alignment:
Q  140 tatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    |||| |||||||||||||||||||| | ||       ||||||||||||||||||||||| |  |||||||| ||||| |||||||| ||||||    
T  26279558 tatacatgaggaacctcaaaccaccctcccaaaaaaacacccacctaacaccaaaagcaacatgacccaattttaataggcctaaaacaagaca 26279465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 233
Target Start/End: Original strand, 28689401 - 28689541
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacc 191  Q
    |||||||||||||||||    || | ||||| ||||||||||||| |||||| ||||| || ||||||| ||| | ||       |||||||||||||||    
T  28689401 caaggtgccgtatatatgcgatatatccaaaggtgaaaatcactgccgtatacatgagaaatctcaaactaccct-cccaaaaaacacccacctaacacc 28689499  T
Q  192 aaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||||||||  | |||||||||||| || ||||| ||||||    
T  28689500 aaaagcaagatgatccaattctaataggcttaaaacaagaca 28689541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 43207340 - 43207387
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  43207340 cccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 43207387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 53506987 - 53507034
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  53506987 cccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 53507034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 54407260 - 54407307
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  54407260 cccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 54407307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 29598086 - 29598033
Alignment:
Q  180 ccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||||||||||||||||||||  ||| |||||||||| |||||||| ||||||    
T  29598086 ccacctaacaccaaaagcaagatgacctaattctaataggcctaaaacaagaca 29598033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 34290677 - 34290738
Alignment:
Q  93 aaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacc 154  Q
    ||||||||||||||||   ||||||||||| |||||||| |||  |||||||||||||||||    
T  34290677 aaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatatatgaggaacc 34290738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 233
Target Start/End: Complemental strand, 49393137 - 49393016
Alignment:
Q  111 tgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaaagcaagagaacccaat 210  Q
    |||||||||||| || ||||| |||  |||||| ||||| ||||||||| |||||| ||        || |||||||||||||||| ||||| ||| |||    
T  49393137 tgtacacccaaaggtaaaaattactaccgtatacatgag-aacctcaaatcaccatcccaaaaaaatactcacctaacaccaaaagtaagaggacctaat 49393039  T
Q  211 tctaatatgcctaaaataagaca 233  Q
    ||||||| |||||||| ||||||    
T  49393038 tctaataggcctaaaacaagaca 49393016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 50939274 - 50939335
Alignment:
Q  93 aaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacc 154  Q
    |||||||||||||||||| ||||||||||| || ||||| |||  |||||| ||||||||||    
T  50939274 aaggtgccgtatatatatggtacacccaaaggtaaaaatgactaccgtatacatgaggaacc 50939335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 36179625 - 36179681
Alignment:
Q  177 cacccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||||||| |||||||||||||||| | |||||||||||| ||| |||| ||||||    
T  36179625 cacccacctgacaccaaaagcaagaggatccaattctaataggccgaaaacaagaca 36179681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 34290739 - 34290786
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    ||||||||||||||||| |||||| ||| |||||||||| ||||||||    
T  34290739 cccacctaacaccaaaaacaagaggacctaattctaataggcctaaaa 34290786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 44708480 - 44708433
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||  ||| |||||||||| ||||||||    
T  44708480 cccacctaacaccaaaagcaagatgacctaattctaataggcctaaaa 44708433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 42453386 - 42453337
Alignment:
Q  184 ctaacaccaaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||||||||||| ||||| || ||||||||||| |||||||| ||||||    
T  42453386 ctaacaccaaaagtaagaggactcaattctaataggcctaaaacaagaca 42453337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 44708542 - 44708481
Alignment:
Q  93 aaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacc 154  Q
    ||||||||||||||||   ||||||||||| |||||||| |||  |||||| ||||||||||    
T  44708542 aaggtgccgtatatatccggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 44708481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 25855488 - 25855416
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccacc 164  Q
    ||||||| ||||||||| | || ||||||||  |||||||||||  |||||| | || |||||||||||||||    
T  25855488 caaggtgtcgtatatatgtagtgcacccaaagttgaaaatcactaccgtatacacgaagaacctcaaaccacc 25855416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 32319215 - 32319263
Alignment:
Q  112 gtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaac 160  Q
    ||||||||||| |||||||| ||| || |||||| ||||||||||||||    
T  32319215 gtacacccaaaggtgaaaattactatcttatatacgaggaacctcaaac 32319263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 37168432 - 37168372
Alignment:
Q  93 aaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaac 153  Q
    |||||||||||||||| | ||| ||||||| |||||||| |||  |||||| |||||||||    
T  37168432 aaggtgccgtatatatgtggtatacccaaaggtgaaaatgactaccgtatacatgaggaac 37168372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 92 - 233
Target Start/End: Original strand, 7944562 - 7944703
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacc 191  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||  |||||| |||||||||||||||||||||| ||       |||||||||||||||    
T  7944562 caaggtgccgtatatatgttgtacacccaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccatcccaaaaaaacacccacctaacacc 7944661  T
Q  192 aaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||||||||| || ||||| ||||| |||||||| ||||||    
T  7944662 aaaagcaagaggacacaattttaataggcctaaaacaagaca 7944703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 15167476 - 15167594
Alignment:
Q  113 tacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaaagcaagagaacccaattc 212  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||        ||||||||||||||||||| ||||| |||||||||    
T  15167476 tacacccaaatgtgaaaatcactatcgtatacatgaggaacctcaaaccacccttccaaaaaa--acccacctaacaccaaaagtaagaggacccaattc 15167573  T
Q  213 taatatgcctaaaataagaca 233  Q
    ||||| |||||||| ||||||    
T  15167574 taataggcctaaaacaagaca 15167594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 11290247 - 11290106
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacc 191  Q
    ||||||| ||||||||| |||||||| |||| ||||||||||||  |||||| ||||| |||||||||||||||| ||       || |||||||| |||    
T  11290247 caaggtgtcgtatatatgttgtacactcaaaggtgaaaatcactaccgtatacatgagcaacctcaaaccaccatcccaacaaaacatccacctaatacc 11290148  T
Q  192 aaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    |||||||| || |||||||||||||| |||||||| ||||||    
T  11290147 aaaagcaacaggacccaattctaataggcctaaaacaagaca 11290106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 34789910 - 34790043
Alignment:
Q  100 cgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaaagcaa 199  Q
    ||||||||| ||||||||||||| ||||||||||||  |||||| ||||| ||  |||||||||||| |        |||||||||||||||||||| ||    
T  34789910 cgtatatatgttgtacacccaaaggtgaaaatcactaccgtatacatgagaaatatcaaaccaccatcctaaaaaaacacccacctaacaccaaaagtaa 34790009  T
Q  200 gagaacccaattctaatatgcctaaaataagaca 233  Q
    ||  |||||||||||||||||||||||| |||||    
T  34790010 gatgacccaattctaatatgcctaaaattagaca 34790043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 15078820 - 15078682
Alignment:
Q  93 aaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacca 192  Q
    ||||||| ||||||||  | ||||||||||||||||||||||| ||||||| |||||||||||||||||||  ||||        |  ||||||||||||    
T  15078820 aaggtgctgtatatatgctatacacccaaatgtgaaaatcactatcgtatacatgaggaacctcaaaccacgcttccaaaaaa--attcacctaacacca 15078723  T
Q  193 aaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    |||| ||||| |||||||||||| | |||||||| ||||||    
T  15078722 aaagtaagaggacccaattctaacaggcctaaaacaagaca 15078682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 41677246 - 41677354
Alignment:
Q  124 gtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaaagcaagagaacccaattctaatatgccta 223  Q
    ||||||||||||   ||||| |||||||||||||||||||| | ||       |||||||||||||||||||||||||| |||| ||||||||| |||||    
T  41677246 gtgaaaatcactactgtatacatgaggaacctcaaaccaccct-ccaaaaaaacacccacctaacaccaaaagcaagaggacccgattctaataggccta 41677344  T
Q  224 aaataagaca 233  Q
    ||| ||||||    
T  41677345 aaacaagaca 41677354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 25561557 - 25561610
Alignment:
Q  116 acccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattcc 169  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||| ||||    
T  25561557 acccaaatgtgaaaatcactgccgtatacatgaggaacctcaaaccacccttcc 25561610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 25561635 - 25561687
Alignment:
Q  181 cacctaacaccaaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    |||||||||||||||||||||| |||||||||||||| |||||||| ||||||    
T  25561635 cacctaacaccaaaagcaagaggacccaattctaataggcctaaaacaagaca 25561687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 5942739 - 5942687
Alignment:
Q  112 gtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccacc 164  Q
    ||||||||||| ||||||||||||  |||||| ||||||||||||||||||||    
T  5942739 gtacacccaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccacc 5942687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 8102889 - 8102845
Alignment:
Q  180 ccacctaacaccaaaagcaagagaacccaattctaatatgcctaa 224  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||    
T  8102889 ccacctaacaccaaaagcaagaggacccaattctaataggcctaa 8102845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 30674502 - 30674558
Alignment:
Q  177 cacccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    |||| ||||||||||||||||||||||||||||||| ||||  ||||||| ||||||    
T  30674502 cacctacctaacaccaaaagcaagagaacccaattcaaatagacctaaaacaagaca 30674558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 14510041 - 14510141
Alignment:
Q  112 gtacacccaaatgtgaaaa-tcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaaagcaagagaacccaat 210  Q
    ||||||||||||||||||| |||||  |||||| ||||| ||||||||||||||||  |       ||||||| |||||| |||||||||| ||||||||    
T  14510041 gtacacccaaatgtgaaaaatcactaccgtatacatgagtaacctcaaaccaccatctcaaaaaaacacccacgtaacactaaaagcaagataacccaat 14510140  T
Q  211 t 211  Q
    |    
T  14510141 t 14510141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 23606732 - 23606779
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  23606732 cccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 23606779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 23798364 - 23798411
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  23798364 cccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 23798411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 5973147 - 5973221
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccat 166  Q
    ||||||| ||||||||| ||||||||||| |  ||||||||| |  |||||| | ||||||||||||||||||||    
T  5973147 caaggtgtcgtatatatgttgtacacccatagatgaaaatcattaccgtatacacgaggaacctcaaaccaccat 5973221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 42600844 - 42600783
Alignment:
Q  93 aaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacc 154  Q
    |||||||||||||||| | ||||||||||| |||||||| |||  |||||| ||||||||||    
T  42600844 aaggtgccgtatatatgtggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 42600783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 5721602 - 5721550
Alignment:
Q  112 gtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccacc 164  Q
    ||||||||||| ||||||||||||  ||||||  |||||||||||||||||||    
T  5721602 gtacacccaaaagtgaaaatcactaccgtatacctgaggaacctcaaaccacc 5721550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 39332465 - 39332517
Alignment:
Q  112 gtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccacc 164  Q
    ||||| ||||| ||||||||||||  |||||| ||||||||||||||||||||    
T  39332465 gtacatccaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccacc 39332517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 10917391 - 10917344
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||  ||| |||||||||| ||||||||    
T  10917391 cccacctaacaccaaaagcaagatgacctaattctaataggcctaaaa 10917344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 42600782 - 42600735
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||  ||| |||||||||| ||||||||    
T  42600782 cccacctaacaccaaaagcaagaagacctaattctaataggcctaaaa 42600735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 45475817 - 45475770
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| | | |||||||||| ||||||||    
T  45475817 cccacctaacaccaaaagcaagaggaactaattctaataggcctaaaa 45475770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 38009267 - 38009317
Alignment:
Q  183 cctaacaccaaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||||||||||||||| ||||| || |||||||| |||||||| ||||||    
T  38009267 cctaacaccaaaagcaaaagaactcagttctaataggcctaaaacaagaca 38009317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 161
Target Start/End: Complemental strand, 8102975 - 8102906
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaacc 161  Q
    |||||||| ||||||||   ||||||| ||| |||||||||| |  |||||| |||||||||||||||||    
T  8102975 caaggtgcagtatatatgcggtacacctaaaggtgaaaatcattaccgtatacatgaggaacctcaaacc 8102906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 23798302 - 23798363
Alignment:
Q  93 aaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacc 154  Q
    ||||||||||||||||   ||||||||||| |||||||| |||  |||||| ||||||||||    
T  23798302 aaggtgccgtatatatgcggtacacccaaaagtgaaaatgactaccgtatacatgaggaacc 23798363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 8646174 - 8646122
Alignment:
Q  181 cacctaacaccaaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    |||||||||||||||||||||  ||| ||||| |||| |||||||| ||||||    
T  8646174 cacctaacaccaaaagcaagatgacctaattcgaataggcctaaaacaagaca 8646122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 92 - 224
Target Start/End: Original strand, 38547075 - 38547207
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacc 191  Q
    ||||||||||||||||| | |||||||||||||||||||||||| || |||| |||||||||||||||||||| | ||       ||||||||||||||     
T  38547075 caaggtgccgtatatatgtggtacacccaaatgtgaaaatcactatcatatacatgaggaacctcaaaccaccctcccaaaaaaacacccacctaacact 38547174  T
Q  192 aaaagcaagagaacccaattctaatatgcctaa 224  Q
    ||||| ||||| ||| |||||||||| ||||||    
T  38547175 aaaagtaagaggaccaaattctaataggcctaa 38547207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 43235817 - 43235941
Alignment:
Q  100 cgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaaagcaa 199  Q
    |||||||||  |||||||||||| |||||||||||| ||||||| |||||||||||||||||||||| ||       || | ||||||||||||||||||    
T  43235817 cgtatatatgatgtacacccaaaggtgaaaatcactatcgtatacatgaggaacctcaaaccaccatcccaaaaaaacatcaacctaacaccaaaagcaa 43235916  T
Q  200 gagaacccaattctaatatgcctaa 224  Q
     || || ||||||||||| ||||||    
T  43235917 taggactcaattctaataggcctaa 43235941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 92 - 233
Target Start/End: Original strand, 39134762 - 39134903
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacc 191  Q
    |||||||| ||||||||    |||||||||| |||| |||||||   ||||| |||||||||||||||||||| | ||       |||||||||||||||    
T  39134762 caaggtgctgtatatatgcaatacacccaaaggtgataatcactactgtatacatgaggaacctcaaaccaccctcccaaaaaaacacccacctaacacc 39134861  T
Q  192 aaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||||||||| |||||||||||||| || ||||| ||||||    
T  39134862 aaaagcaagaggacccaattctaataggcttaaaacaagaca 39134903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 5533386 - 5533244
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattcc-nnnnnnncacccacctaacac 190  Q
    |||||||||||||||||  ||||||  |||| ||||||||||||  |||||| |||||||| ||||||||||||| ||        | |||||||||||     
T  5533386 caaggtgccgtatatatgatgtacaatcaaaggtgaaaatcactaccgtatacatgaggaaactcaaaccaccatcccaaaaaaaactcccacctaacat 5533287  T
Q  191 caaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    |||||||||||| | |||||||||||| || ||||| ||||||    
T  5533286 caaaagcaagaggatccaattctaataggcgtaaaacaagaca 5533244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 45758568 - 45758494
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccat 166  Q
    |||||||  |||||||| || |||| ||||| ||||||||||||  |||||| ||||||||||||||||||||||    
T  45758568 caaggtgttgtatatatgttatacatccaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccat 45758494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 6221724 - 6221675
Alignment:
Q  120 aaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattcc 169  Q
    |||||||||||||| | |||||||||||||||||||||||||||| ||||    
T  6221724 aaatgtgaaaatcattatcgtatatatgaggaacctcaaaccacccttcc 6221675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 26803990 - 26803882
Alignment:
Q  124 gtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaaagcaagagaacccaattctaatatgccta 223  Q
    ||||||||||||  |||||| ||||| |||||||||||||| | ||       ||| ||||||||||||||||||||| ||| ||||||||||| | |||    
T  26803990 gtgaaaatcactaccgtatacatgagaaacctcaaaccaccct-cccaaaaaacactcacctaacaccaaaagcaagataactcaattctaataggacta 26803892  T
Q  224 aaataagaca 233  Q
    ||| ||||||    
T  26803891 aaacaagaca 26803882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 9181107 - 9181154
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  9181107 cccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 9181154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 19955728 - 19955681
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  19955728 cccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 19955681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 44895663 - 44895616
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  44895663 cccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 44895616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 1366980 - 1367027
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||  ||| |||||||||| ||||||||    
T  1366980 cccacctaacaccaaaagcaagatgacctaattctaataggcctaaaa 1367027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 4971720 - 4971767
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| | | |||||||||| ||||||||    
T  4971720 cccacctaacaccaaaagcaagaggaactaattctaataggcctaaaa 4971767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 9173125 - 9173172
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||| ||||| ||| |||||||||| ||||||||    
T  9173125 cccacctaacaccaaaagtaagaggacctaattctaataggcctaaaa 9173172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 13913584 - 13913631
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||  ||| |||||||||| ||||||||    
T  13913584 cccacctaacaccaaaagcaagatgacctaattctaataggcctaaaa 13913631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 23185438 - 23185391
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| | | |||||||||| ||||||||    
T  23185438 cccacctaacaccaaaagcaagaggaactaattctaataggcctaaaa 23185391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 38853596 - 38853527
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaacca 162  Q
    ||||||| ||||||||| ||||| | ||||| ||||||||||||  |||||| |||| |||||||||||||    
T  38853596 caaggtgtcgtatatatgttgtatatccaaaggtgaaaatcactaccgtatacatga-gaacctcaaacca 38853527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 19955790 - 19955729
Alignment:
Q  93 aaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacc 154  Q
    ||||| ||||||||||   ||||||||||| |||||||| |||  |||||||||||||||||    
T  19955790 aaggtaccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatatatgaggaacc 19955729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 10926079 - 10926115
Alignment:
Q  181 cacctaacaccaaaagcaagagaacccaattctaata 217  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  10926079 cacctaacaccaaaagcaagagaatccagttctaata 10926115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 17168964 - 17168920
Alignment:
Q  182 acctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    ||||||||||||||||||||  ||| |||||||||| ||||||||    
T  17168964 acctaacaccaaaagcaagaagacctaattctaataggcctaaaa 17168920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 17800268 - 17800401
Alignment:
Q  100 cgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaaagcaa 199  Q
    ||||||||| ||||||||||||| ||||||||||||  |||||  ||||||||  |||||||||||| ||       || ||||||||||||||||||||    
T  17800268 cgtatatatgttgtacacccaaaagtgaaaatcactaccgtatgcatgaggaatttcaaaccaccatcccaagaaaacatccacctaacaccaaaagcaa 17800367  T
Q  200 gagaacccaattctaatatgcctaaaataagaca 233  Q
    ||| |||||||||||||| |||||||| ||||||    
T  17800368 gaggacccaattctaataggcctaaaacaagaca 17800401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 7398514 - 7398373
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacc 191  Q
    ||||||||| ||||||| |  |||||| ||| ||||||||||||  | |||| |||||||||||||||||||| | ||       || |||| |||||||    
T  7398514 caaggtgccatatatatgtgatacacctaaaggtgaaaatcactaccatatacatgaggaacctcaaaccaccctcccaaaaaaacatccacgtaacacc 7398415  T
Q  192 aaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||||||||| |||||||||||||| |||||||| ||||||    
T  7398414 aaaagcaagaggacccaattctaataggcctaaaacaagaca 7398373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 27237494 - 27237603
Alignment:
Q  124 gtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaaagcaagagaacccaattctaatatgccta 223  Q
    |||||||||||| ||||||| |||||||||||||||||||| | ||       ||| |||||||||||| ||||||||  |||||||||||||| |||||    
T  27237494 gtgaaaatcactatcgtatacatgaggaacctcaaaccaccctcccaaaaaaacactcacctaacaccataagcaagatgacccaattctaataggccta 27237593  T
Q  224 aaataagaca 233  Q
    ||| ||||||    
T  27237594 aaacaagaca 27237603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 23859115 - 23858997
Alignment:
Q  113 tacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaaagcaagagaacccaattc 212  Q
    ||||||||||  ||||||| |||  |||||| ||||||| |||||||||||| | ||       |||||||||||||||||| ||||||| |||||||||    
T  23859115 tacacccaaagatgaaaattactaccgtatacatgaggatcctcaaaccaccctcccaaaaaaacacccacctaacaccaaatgcaagaggacccaattc 23859016  T
Q  213 taatatgcctaaaataaga 231  Q
    ||||| |||||||| ||||    
T  23859015 taataggcctaaaacaaga 23858997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 9021843 - 9021957
Alignment:
Q  96 gtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaaa 195  Q
    |||||||||||||   ||||||||||| ||||||||||||  |||||| |||||| ||||||||||||| | ||       || ||||||||||||||||    
T  9021843 gtgccgtatatatgcggtacacccaaaggtgaaaatcactaccgtatacatgagg-acctcaaaccaccctcccaaaaaaacatccacctaacaccaaaa 9021941  T
Q  196 gcaagagaacccaatt 211  Q
    |||||||||| |||||    
T  9021942 gcaagagaactcaatt 9021957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 24525787 - 24525834
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||    
T  24525787 cccacctaacaccaaaagcaagaggacctaattctaatatgcctaaaa 24525834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 26917810 - 26917862
Alignment:
Q  181 cacctaacaccaaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    |||||||||||||||||||||  |||||||||||||| |||||||| ||||||    
T  26917810 cacctaacaccaaaagcaagaagacccaattctaataagcctaaaacaagaca 26917862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 23551173 - 23551220
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  23551173 cccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 23551220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 25010433 - 25010386
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  25010433 cccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 25010386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 38414978 - 38415025
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  38414978 cccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 38415025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 8239746 - 8239688
Alignment:
Q  96 gtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacc 154  Q
    ||||||||||||| | |||||||||||||||||||| | |  |||||||||||||||||    
T  8239746 gtgccgtatatatgtggtacacccaaatgtgaaaatgattaccgtatatatgaggaacc 8239688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 233
Target Start/End: Original strand, 12419567 - 12419677
Alignment:
Q  125 tgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaaagcaagagaacccaattc--taatatgcct 222  Q
    ||||||||||| | | ||| |||||||||||||||||||| | ||        || |||||||||||||||||||||| |||||||||  ||||| ||||    
T  12419567 tgaaaatcactattgaatacatgaggaacctcaaaccaccctcccaaaaaaatacacacctaacaccaaaagcaagaggacccaattctataataggcct 12419666  T
Q  223 aaaataagaca 233  Q
    |||| ||||||    
T  12419667 aaaacaagaca 12419677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 12981369 - 12981317
Alignment:
Q  112 gtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccacc 164  Q
    |||||| |||| ||||||||||||   ||||||||||||||||||||||||||    
T  12981369 gtacacacaaaggtgaaaatcactactgtatatatgaggaacctcaaaccacc 12981317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 19692090 - 19692047
Alignment:
Q  183 cctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||| ||| |||||||||| ||||||||    
T  19692090 cctaacaccaaaagcaagaggacctaattctaataggcctaaaa 19692047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 20091383 - 20091430
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||| ||||| ||| |||||||||| ||||||||    
T  20091383 cccacctaacaccaaaagtaagaggacctaattctaataggcctaaaa 20091430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 47985072 - 47985119
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||| ||||||||||| ||| |||||||||| ||||||||    
T  47985072 cccacctaacacaaaaagcaagaggacctaattctaataggcctaaaa 47985119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 8239684 - 8239638
Alignment:
Q  180 ccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||| |||||||||||||||||| ||| |||||||||| ||||||||    
T  8239684 ccacttaacaccaaaagcaagaggacctaattctaataggcctaaaa 8239638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 36891621 - 36891571
Alignment:
Q  112 gtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaacca 162  Q
    ||||| ||||| ||||||||||||  |||||| ||||||||||||||||||    
T  36891621 gtacatccaaaggtgaaaatcactaccgtatacatgaggaacctcaaacca 36891571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 6765740 - 6765797
Alignment:
Q  112 gtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattcc 169  Q
    ||||| ||||| ||||||||||||  |||||||| ||| |||||||||||||| ||||    
T  6765740 gtacatccaaaggtgaaaatcactaccgtatataagagtaacctcaaaccacccttcc 6765797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 20091321 - 20091382
Alignment:
Q  93 aaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacc 154  Q
    ||||||||||||||||   ||||||||||| |||||||| |||  |||||| ||||||||||    
T  20091321 aaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 20091382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 52468354 - 52468213
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacc 191  Q
    ||||||||||||||||| || |||| ||||| ||||||||||||  |||||  |||||||||||||||||||| | ||       |||||||||||| ||    
T  52468354 caaggtgccgtatatatgttatacatccaaaggtgaaaatcactaccgtatgcatgaggaacctcaaaccaccttcccaaaaagacacccacctaacgcc 52468255  T
Q  192 aaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    |||| |||||| || ||||||||||| |||||||| ||||||    
T  52468254 aaaaacaagaggactcaattctaataggcctaaaacaagaca 52468213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 233
Target Start/End: Original strand, 36118497 - 36118637
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacc 191  Q
    ||||||| ||||||||| |  ||||||||||| |||||||||||  |||||| ||||| |||||| ||||||| |||        || ||||||||||||    
T  36118497 caaggtgtcgtatatatgtgatacacccaaatatgaaaatcactaccgtatacatgagtaacctctaaccacccttc-aaaaaaacatccacctaacacc 36118595  T
Q  192 aaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||||||||  |||||||||||||| |||||||| ||||||    
T  36118596 aaaagcaagatgacccaattctaataggcctaaaagaagaca 36118637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 24397001 - 24396862
Alignment:
Q  93 aaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacca 192  Q
    ||||||| |||||||| |  ||||| |||| |||||||||||| ||||||| |||||||||||||||| ||| | ||        | ||| |||||||||    
T  24397001 aaggtgcagtatatatgtgatacactcaaaggtgaaaatcactatcgtatacatgaggaacctcaaactaccct-ccaaaaaaaaatccatctaacacca 24396903  T
Q  193 aaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||||||||||| |||||||||||||| ||||| ||||||    
T  24396902 aaagcaagagaactcaattctaatatgcttaaaacaagaca 24396862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 27112077 - 27111973
Alignment:
Q  113 tacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaaagcaagagaacccaattc 212  Q
    |||||| ||||||||||||||||  |||||| |||||||||||||||||||| | ||       |||||||||||||| ||||||||||| || ||||||    
T  27112077 tacaccaaaatgtgaaaatcactaccgtatacatgaggaacctcaaaccaccctcccagaaaaacacccacctaacacaaaaagcaagaggactcaattc 27111978  T
Q  213 taata 217  Q
    |||||    
T  27111977 taata 27111973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 37746847 - 37746901
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    |||||||||||||||||||||||  |||||||||||||| |||||||| ||||||    
T  37746847 cccacctaacaccaaaagcaagatgacccaattctaataggcctaaaacaagaca 37746901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 2135447 - 2135496
Alignment:
Q  182 acctaacaccaaaagcaagagaacccaattctaatatgcctaaaataaga 231  Q
    ||||||||||||||||||||| |||||||||||||| |||||||| ||||    
T  2135447 acctaacaccaaaagcaagaggacccaattctaataagcctaaaacaaga 2135496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 36178740 - 36178600
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacc 191  Q
    ||||||| |||||||||    |||||||||||||||||||||||  | |||| |||| ||| | ||||||||| | ||       ||| |||||||||||    
T  36178740 caaggtgtcgtatatatgcgatacacccaaatgtgaaaatcactaccttatacatgaagaatc-caaaccaccctcccaaaaaaacactcacctaacacc 36178642  T
Q  192 aaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||||||||| |||| ||||||||  |||||||| ||||||    
T  36178641 aaaagcaagaggacccgattctaatgggcctaaaacaagaca 36178600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 19498509 - 19498462
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  19498509 cccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 19498462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 32128589 - 32128542
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  32128589 cccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 32128542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 34027584 - 34027537
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  34027584 cccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 34027537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 40089521 - 40089474
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  40089521 cccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 40089474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 16882499 - 16882544
Alignment:
Q  181 cacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||| ||| |||||||||| ||||||||    
T  16882499 cacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 16882544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 30507199 - 30507252
Alignment:
Q  180 ccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||||||||||||||||||||| || ||||||| ||| |||||||| ||||||    
T  30507199 ccacctaacaccaaaagcaagaggactcaattcttataggcctaaaacaagaca 30507252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 4167930 - 4168002
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccacc 164  Q
    |||||||||||||||||    |||||||||| ||||||||||||  | |||| ||||||||||||||| ||||    
T  4167930 caaggtgccgtatatatgcgatacacccaaaggtgaaaatcactaccttatacatgaggaacctcaaatcacc 4168002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 10042039 - 10042111
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccacc 164  Q
    ||||||||||||| ||| |  |||||| ||||||||||||||||  |||||| | ||||||||||||| ||||    
T  10042039 caaggtgccgtatgtatgtgatacacctaaatgtgaaaatcactaccgtatacaggaggaacctcaaatcacc 10042111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 39329516 - 39329572
Alignment:
Q  177 cacccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||||| |||||||||||||||||  ||| |||||||||| |||||||| ||||||    
T  39329516 cacccacataacaccaaaagcaagaagaccaaattctaataggcctaaaacaagaca 39329572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 40217209 - 40217157
Alignment:
Q  181 cacctaacaccaaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||||||||||||||||| |  |||||||||||||| |||||||| ||||||    
T  40217209 cacctaacaccaaaagcaaaatgacccaattctaataggcctaaaacaagaca 40217157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 54083347 - 54083391
Alignment:
Q  182 acctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    ||||||||||||||||||||| ||| |||||||||| ||||||||    
T  54083347 acctaacaccaaaagcaagaggacctaattctaataggcctaaaa 54083391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 16845026 - 16844979
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||  ||| |||||||||| ||||||||    
T  16845026 cccacctaacaccaaaagcaagatgacctaattctaataggcctaaaa 16844979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 24969442 - 24969395
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| | | |||||||||| ||||||||    
T  24969442 cccacctaacaccaaaagcaagaggatctaattctaataggcctaaaa 24969395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 38352357 - 38352404
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||  ||| |||||||||| ||||||||    
T  38352357 cccacctaacaccaaaagcaagatgacctaattctaataggcctaaaa 38352404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 15735076 - 15735030
Alignment:
Q  180 ccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    ||||||||||||||||||||||  |||||||||||| | ||||||||    
T  15735076 ccacctaacaccaaaagcaagaagacccaattctaacaggcctaaaa 15735030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 54780845 - 54780783
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacc 154  Q
    |||||||||||||||||   ||||||||||| |||||||| |||  |||||| ||||||||||    
T  54780845 caaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 54780783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 37777263 - 37777324
Alignment:
Q  93 aaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacc 154  Q
    ||||||||||||||||   ||||||||||| |||||||| |||  |||||| ||||||||||    
T  37777263 aaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 37777324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 43455571 - 43455632
Alignment:
Q  93 aaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacc 154  Q
    ||||||||||||||||   ||||||||||| |||||||| |||  |||||| ||||||||||    
T  43455571 aaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 43455632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 37744970 - 37745022
Alignment:
Q  113 tacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccacca 165  Q
    |||| ||||| ||||||||||||  ||||||  ||||||||||||||||||||    
T  37744970 tacatccaaaggtgaaaatcactaccgtatacttgaggaacctcaaaccacca 37745022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 92 - 233
Target Start/End: Original strand, 12134080 - 12134221
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacc 191  Q
    |||||| ||||||||||    |||||||||| ||||||||||||  |||||| || ||||||||||||||||| | ||       ||  |||||||||||    
T  12134080 caaggtaccgtatatatgcgatacacccaaaagtgaaaatcactaccgtatacattaggaacctcaaaccaccctcccacaaaaacatacacctaacacc 12134179  T
Q  192 aaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    |||||||||||||| ||||||||||| |||||||| ||||||    
T  12134180 aaaagcaagagaactcaattctaataggcctaaaacaagaca 12134221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 37182732 - 37182591
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacc 191  Q
    ||||||| |||||||||    |||||||||| ||||||||||||  |||||| ||||||||||||||| |||| | ||       ||||||||||||| |    
T  37182732 caaggtgtcgtatatatgcaatacacccaaaagtgaaaatcactaccgtatacatgaggaacctcaaatcaccctcccaaaaaaacacccacctaacagc 37182633  T
Q  192 aaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||||||||  |||||||||||||| |||||||| ||||||    
T  37182632 aaaagcaagatgacccaattctaataggcctaaaacaagaca 37182591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 233
Target Start/End: Complemental strand, 29694420 - 29694305
Alignment:
Q  113 tacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaaagcaagagaacccaattc 212  Q
    |||||||||||||||||||||||     ||| ||||| ||||||||||||| || ||       |||||||||||||||||||||||||| |||||||||    
T  29694420 tacacccaaatgtgaaaatcact-----atacatgagaaacctcaaaccactatcccaaaaaaacacccacctaacaccaaaagcaagaggacccaattc 29694326  T
Q  213 taatatgcctaaaataagaca 233  Q
    ||||| | |||||| ||||||    
T  29694325 taataggtctaaaacaagaca 29694305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 16097070 - 16096993
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattcc 169  Q
    |||||||||||||||||  |||||||||||| |||||||| |||  | |||| |||||||||||||||||||||||||    
T  16097070 caaggtgccgtatatatgatgtacacccaaaggtgaaaattactaccttatacatgaggaacctcaaaccaccattcc 16096993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 217
Target Start/End: Original strand, 21665743 - 21665865
Alignment:
Q  95 ggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaa 194  Q
    |||| ||||||||| |  |||| | ||||||||||||||||  |||||| |||||||||| ||||||||| | |        ||||||||||||||| ||    
T  21665743 ggtgtcgtatatatgtgatacatcaaaatgtgaaaatcactaccgtatacatgaggaaccacaaaccaccctcctaaaaaaacacccacctaacacctaa 21665842  T
Q  195 agcaagagaacccaattctaata 217  Q
    |||||||| ||||||||||||||    
T  21665843 agcaagaggacccaattctaata 21665865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 38400833 - 38400719
Alignment:
Q  119 caaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaaagcaagagaacccaattctaatat 218  Q
    |||| ||||||||||||  |||||| |||||||||||||||||||| |          |||||||||||||||||||||||||  |||| |||||||||     
T  38400833 caaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccctcttaaaaaaacacccacctaacaccaaaagcaagatgaccctattctaatag 38400734  T
Q  219 gcctaaaataagaca 233  Q
    |||||||| ||||||    
T  38400733 gcctaaaacaagaca 38400719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 28425750 - 28425816
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaa 158  Q
    ||||||| |||||||||   ||||||||||||||||||||||||  | |||||||||||||||||||    
T  28425750 caaggtgtcgtatatatgcagtacacccaaatgtgaaaatcactaccatatatatgaggaacctcaa 28425816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 233
Target Start/End: Original strand, 24035585 - 24035726
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacc 191  Q
    |||||||||||||| ||    |||||| ||| ||||||||||||  || ||| |||||||| | ||||||||| | ||       ||||||||||||||     
T  24035585 caaggtgccgtataaatgcgatacacctaaaggtgaaaatcactaccgcatacatgaggaatcgcaaaccaccctcccaaaaaaacacccacctaacact 24035684  T
Q  192 aaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||||||||| ||| ||||||||||  ||||||| ||||||    
T  24035685 aaaagcaagaggacctaattctaatagacctaaaacaagaca 24035726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 8327665 - 8327618
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  8327665 cccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 8327618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 37622466 - 37622512
Alignment:
Q  177 cacccacctaacaccaaaagcaagagaacccaattctaatatgccta 223  Q
    ||||||| |||||||||||| ||||| ||||||||||||||||||||    
T  37622466 cacccacttaacaccaaaagtaagaggacccaattctaatatgccta 37622512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 10252385 - 10252328
Alignment:
Q  177 cacccacctaa-caccaaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||||||||| ||||||||||||||  |||||||||||||| |||||||| ||||||    
T  10252385 cacccacctaaacaccaaaagcaagatgacccaattctaataggcctaaaacaagaca 10252328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 233
Target Start/End: Original strand, 11912801 - 11912939
Alignment:
Q  96 gtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnn-cacccacctaacaccaaa 194  Q
    |||||||||||||    |||| |||||  |||||||||||  |||||| || ||||||||||||||||| | ||        ||| ||||||||||||||    
T  11912801 gtgccgtatatatgcaatacatccaaagatgaaaatcactaccgtatacataaggaacctcaaaccaccctcccaaaaaaaacactcacctaacaccaaa 11912900  T
Q  195 agcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    | |||||  |||||||||||||| |||||||| ||||||    
T  11912901 atcaagatgacccaattctaataggcctaaaacaagaca 11912939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 9046028 - 9045981
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||| ||||||||||| ||| |||||||||| ||||||||    
T  9046028 cccacctaacacaaaaagcaagaggacctaattctaataagcctaaaa 9045981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 10762668 - 10762715
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||| ||||||| ||| |||||||||| ||||||||    
T  10762668 cccacctaacaccaaatgcaagaggacctaattctaataggcctaaaa 10762715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 11952699 - 11952787
Alignment:
Q  145 atgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    |||||||||||||||||||| | ||       ||| ||||||||||| ||| |||||| || ||||||||||| |||||||| ||||||    
T  11952699 atgaggaacctcaaaccaccctcccaaaaaaacactcacctaacacctaaaacaagaggactcaattctaataggcctaaaacaagaca 11952787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 26716127 - 26716080
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||| ||||||||||||||| |||||||||| | ||||||    
T  26716127 cccacctaacacaaaaagcaagagaacctaattctaataggtctaaaa 26716080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 27506843 - 27506890
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||  ||| |||||||||| ||||||||    
T  27506843 cccacctaacaccaaaagcaagatgacctaattctaataggcctaaaa 27506890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 9046090 - 9046029
Alignment:
Q  93 aaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacc 154  Q
    ||||||||||||||||   ||||||||||| |||||||| |||  |||||| ||||||||||    
T  9046090 aaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 9046029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 10762606 - 10762667
Alignment:
Q  93 aaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacc 154  Q
    ||||||| |||||||| | ||||||||||| |||||||| |||  |||||| ||||||||||    
T  10762606 aaggtgcggtatatatgtggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 10762667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 24410498 - 24410437
Alignment:
Q  93 aaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacc 154  Q
    ||||||||||||||||   ||||||||||| |||||||| |||  |||||| ||||||||||    
T  24410498 aaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 24410437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 13800674 - 13800718
Alignment:
Q  181 cacctaacaccaaaagcaagagaacccaattctaatatgcctaaa 225  Q
    |||||||||||||||||||||  | |||||||||||| |||||||    
T  13800674 cacctaacaccaaaagcaagaagatccaattctaataggcctaaa 13800718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 1416 - 1278
Alignment:
Q  93 aaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacca 192  Q
    ||||||| ||||||||  | ||||||||||||||||||||||| ||||||| |||||||||||||||||||  ||||        |  ||||||||||||    
T  1416 aaggtgctgtatatatgctatacacccaaatgtgaaaatcactatcgtatacatgaggaacctcaaaccacgcttccaaaaaa--attcacctaacacca 1319  T
Q  193 aaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    |||| ||||| |||||||||||| | |||||||| ||||||    
T  1318 aaagtaagaggacccaattctaacaggcctaaaacaagaca 1278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 40148 - 40005
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattcc--nnnnnnncacccacctaaca 189  Q
    ||||||||||||| ||| |||||||||| || |||||||||||  ||||||| ||||| |||||||||||||| | ||         || ||||||||||    
T  40148 caaggtgccgtatttatgttgtacaccctaaggtgaaaatcacaatcgtatacatgagcaacctcaaaccaccgtcccaaaaaaaaacatccacctaaca 40049  T
Q  190 ccaaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    | ||||||||||| |||||||||||||| |||||||| ||||||    
T  40048 caaaaagcaagaggacccaattctaataggcctaaaacaagaca 40005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 138208 - 138065
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattcc--nnnnnnncacccacctaaca 189  Q
    ||||||||||||| ||| |||||||||| || |||||||||||  ||||||| ||||| |||||||||||||| | ||         || ||||||||||    
T  138208 caaggtgccgtatttatgttgtacaccctaaggtgaaaatcacaatcgtatacatgagcaacctcaaaccaccgtcccaaaaaaaaacatccacctaaca 138109  T
Q  190 ccaaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    | ||||||||||| |||||||||||||| |||||||| ||||||    
T  138108 caaaaagcaagaggacccaattctaataggcctaaaacaagaca 138065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 34425966 - 34425825
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacc 191  Q
    ||||||||||||||||| |  |||||| |||  | ||||||| |  |||||| |||||||||||||||||||| | ||       ||| |||||||||||    
T  34425966 caaggtgccgtatatatgtgatacacctaaagattaaaatcattaccgtatacatgaggaacctcaaaccaccctcccaaaaaaacactcacctaacacc 34425867  T
Q  192 aaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||||||||| || ||||||||||| |||||||| ||||||    
T  34425866 aaaagcaagaggactcaattctaataggcctaaaacaagaca 34425825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 36868913 - 36868985
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccacc 164  Q
    ||||||| ||||||||| | ||||||||||||||||||||||||  |||||| |||||||| |||||||||||    
T  36868913 caaggtgtcgtatatatgtggtacacccaaatgtgaaaatcactaccgtatacatgaggaatctcaaaccacc 36868985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 96 - 233
Target Start/End: Original strand, 2024683 - 2024818
Alignment:
Q  96 gtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaaa 195  Q
    ||||||||||||| |  ||||||||||  |||||||||||  | |||| ||||||| |||||||||| | | ||       |||  ||||||||||||||    
T  2024683 gtgccgtatatatgtgatacacccaaagatgaaaatcactaccatatacatgaggatcctcaaaccatcctcccaaaaaaacac--acctaacaccaaaa 2024780  T
Q  196 gcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||||| || |||||||||||||||||||| ||||||    
T  2024781 gcaagaggactcaattctaatatgcctaaaacaagaca 2024818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 226
Target Start/End: Original strand, 14318422 - 14318555
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacc 191  Q
    ||||||| ||||||||| |  |||| |||||  |||||||||||  |||||| ||||||||||||||||||||  |||       ||||||||||| |||    
T  14318422 caaggtgtcgtatatatgtgatacatccaaaaatgaaaatcactaccgtatacatgaggaacctcaaaccacc-ctccaaaaaaacacccacctaagacc 14318520  T
Q  192 aaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    ||||||||||| ||||| || ||||| ||||||||    
T  14318521 aaaagcaagaggacccagttttaataggcctaaaa 14318555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 213
Target Start/End: Complemental strand, 33037835 - 33037721
Alignment:
Q  100 cgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattc-cnnnnnnncacccacctaacaccaaaagca 198  Q
    ||||||||| ||||||||||||| ||||||| || |  |||||| |||||||||||||||||||||| |         |||| |||||||||||||||||    
T  33037835 cgtatatatgttgtacacccaaaggtgaaaaccattaccgtatacatgaggaacctcaaaccaccatccaaaaaaaaacacctacctaacaccaaaagca 33037736  T
Q  199 agagaacccaattct 213  Q
    |||| ||||||||||    
T  33037735 agaggacccaattct 33037721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 11242391 - 11242489
Alignment:
Q  128 aaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    ||||||||  |||||| |||||||||||||||||||| | ||       |||||  ||||||||||||||||||| |||||||||||||| || |||||    
T  11242391 aaatcactaccgtatacatgaggaacctcaaaccaccctcccaaaaaaacacccctctaacaccaaaagcaagaggacccaattctaataggcataaaa 11242489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 41911674 - 41911731
Alignment:
Q  112 gtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattcc 169  Q
    ||||||||||| || ||||||||| ||||||||||||||||||||||| |||| ||||    
T  41911674 gtacacccaaaagtaaaaatcactatcgtatatatgaggaacctcaaatcacccttcc 41911731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 15639706 - 15639570
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacc 191  Q
    ||||||| |||||||||    |||| |||||  ||||||||||||||||||| || |||||||| |||||||   ||        ||| |||||||||||    
T  15639706 caaggtgacgtatatatgcgatacatccaaagatgaaaatcactgtcgtatacataaggaaccttaaaccac---tctaaaaaaacactcacctaacacc 15639610  T
Q  192 aaaagcaagagaacccaattctaatatgcctaaaataaga 231  Q
    ||||| ||||| |||||||||||||| |||||||| ||||    
T  15639609 aaaagtaagaggacccaattctaataggcctaaaacaaga 15639570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 1366584 - 1366635
Alignment:
Q  113 tacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccacc 164  Q
    |||||| ||||||||||||||||  |||||||||||||||||||| ||||||    
T  1366584 tacacctaaatgtgaaaatcactaccgtatatatgaggaacctcataccacc 1366635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 7670924 - 7670877
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  7670924 cccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 7670877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 16198894 - 16198941
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  16198894 cccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 16198941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 28822442 - 28822489
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  28822442 cccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 28822489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 38869463 - 38869510
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  38869463 cccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 38869510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 40794452 - 40794503
Alignment:
Q  182 acctaacaccaaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||||||||||||| ||||| |||||||||||||| |||||||| ||||||    
T  40794452 acctaacaccaaaagtaagaggacccaattctaataagcctaaaacaagaca 40794503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 2530942 - 2531006
Alignment:
Q  100 cgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccacc 164  Q
    ||||||||||  ||||| ||||| ||||||||||||   ||||| ||||||||||||||||||||    
T  2530942 cgtatatatacggtacatccaaaggtgaaaatcactactgtatacatgaggaacctcaaaccacc 2531006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 40389636 - 40389683
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||| ||||||||||| ||| |||||||||| ||||||||    
T  40389636 cccacctaacactaaaagcaagaggacctaattctaataggcctaaaa 40389683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 2412125 - 2412079
Alignment:
Q  118 ccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccacc 164  Q
    ||||||||||||||||||   ||||| ||||||||||||||||||||    
T  2412125 ccaaatgtgaaaatcactactgtatacatgaggaacctcaaaccacc 2412079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 40794370 - 40794436
Alignment:
Q  98 gccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccacc 164  Q
    |||||| ||||||  |||||| ||| ||||||||||||  |||||| ||||| ||||||||||||||    
T  40794370 gccgtaaatatatgatacaccaaaaggtgaaaatcactaccgtatacatgagaaacctcaaaccacc 40794436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 9364353 - 9364292
Alignment:
Q  93 aaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacc 154  Q
    ||||||||||||||||   ||||||||||| |||||||| |||  |||||| ||||||||||    
T  9364353 aaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 9364292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 22648860 - 22648897
Alignment:
Q  180 ccacctaacaccaaaagcaagagaacccaattctaata 217  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  22648860 ccacctaacaccaaaagcaagagaatcaaattctaata 22648897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 217
Target Start/End: Original strand, 2477645 - 2477749
Alignment:
Q  113 tacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaaagcaagagaacccaattc 212  Q
    |||||| ||||||||||||||||  |||||| |||||||||||||||||||| | ||       |||||||||||||| ||||||||||| || ||||||    
T  2477645 tacaccaaaatgtgaaaatcactaccgtatacatgaggaacctcaaaccaccctcccagaaaaacacccacctaacacaaaaagcaagaggactcaattc 2477744  T
Q  213 taata 217  Q
    |||||    
T  2477745 taata 2477749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 4037014 - 4036895
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacc 191  Q
    ||||||||||||||||||| ||||||||||| || || ||||||  |||||||||||||||| |||||||||| | |        ||| |||||||||||    
T  4037014 caaggtgccgtatatatatggtacacccaaaggtaaagatcactaccgtatatatgaggaacttcaaaccaccctccaaaaaaaacactcacctaacacc 4036915  T
Q  192 aaaagcaagagaacccaatt 211  Q
    ||||||||||  ||||||||    
T  4036914 aaaagcaagatgacccaatt 4036895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 20611856 - 20611715
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacacc 191  Q
    ||||||| ||||||||||    ||| ||||| ||||||||||||  |||||| |||||||||||||||| ||| | ||       ||| |||||||||||    
T  20611856 caaggtgtcgtatatatacgacacatccaaaggtgaaaatcactaccgtatacatgaggaacctcaaactaccctcccaaaaaaacactcacctaacacc 20611757  T
Q  192 aaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    ||||| || |  |||||||||||||| |||||||| ||||||    
T  20611756 aaaagtaaaatgacccaattctaataggcctaaaacaagaca 20611715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 21183723 - 21183787
Alignment:
Q  100 cgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccacc 164  Q
    ||||||||| | |||||||||||  |||||||||||  |||||| ||||||||||||||||||||    
T  21183723 cgtatatatgtggtacacccaaagttgaaaatcactaccgtatacatgaggaacctcaaaccacc 21183787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 33774183 - 33774121
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacc 154  Q
    |||||||||||||||||   |||||||||||||||||||| |||  |||||| ||||||||||    
T  33774183 caaggtgccgtatatatgcggtacacccaaatgtgaaaatgactaccgtatacatgaggaacc 33774121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 17353957 - 17353910
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| ||||||||||  |||||||    
T  17353957 cccacctaacaccaaaagcaagaggacctaattctaatagacctaaaa 17353910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 19987164 - 19987117
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||  ||| |||||||||| ||||||||    
T  19987164 cccacctaacaccaaaagcaagatgacctaattctaataggcctaaaa 19987117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 17354019 - 17353958
Alignment:
Q  93 aaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacc 154  Q
    |||||| |||||||||   |||||||||||||||||||| ||| ||||||| |||| |||||    
T  17354019 aaggtgtcgtatatatgcggtacacccaaatgtgaaaatgactatcgtatacatgatgaacc 17353958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 20711761 - 20711822
Alignment:
Q  93 aaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacc 154  Q
    ||||||||||||||||   ||||||||||| |||||||| |||  |||||| ||||||||||    
T  20711761 aaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 20711822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 27788729 - 27788790
Alignment:
Q  93 aaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacc 154  Q
    ||||||||||||||||   ||||||||||| |||||||| |||  |||||| ||||||||||    
T  27788729 aaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 27788790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 235335 - 235375
Alignment:
Q  186 aacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    ||||||||||||||||| ||| |||||||||| ||||||||    
T  235335 aacaccaaaagcaagaggacctaattctaataggcctaaaa 235375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 30121747 - 30121699
Alignment:
Q  185 taacaccaaaagcaagagaacccaattctaatatgcctaaaataagaca 233  Q
    |||||||||||||||||| |||| |||||||||  ||||||| ||||||    
T  30121747 taacaccaaaagcaagaggacccgattctaatagacctaaaacaagaca 30121699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 226
Target Start/End: Original strand, 230923 - 231033
Alignment:
Q  116 acccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccaccattccnnnnnnncacccacctaacaccaaaagcaagagaacccaattctaa 215  Q
    ||||||| ||||||||||||  | |||| ||||||||| |||||||||| | ||       |||||||||||||||||||||||||| |||| |||||||    
T  230923 acccaaaggtgaaaatcactaccttatacatgaggaacttcaaaccaccctcccaaaaaaccacccacctaacaccaaaagcaagaggacccgattctaa 231022  T
Q  216 tatgcctaaaa 226  Q
    || ||||||||    
T  231023 taggcctaaaa 231033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1590 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 298 - 370
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccacc 164  Q
    ||||||| |||||||||   ||||||||||||||||||||||||  |||||| |||| |||||||||||||||    
T  298 caaggtgtcgtatatatgcggtacacccaaatgtgaaaatcactaccgtatacatgatgaacctcaaaccacc 370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 38988 - 38916
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaaccacc 164  Q
    ||||||| |||||||||    ||||| |||||||||||||||||  |||||||||||||||||||||||||||    
T  38988 caaggtgtcgtatatatgcgatacacacaaatgtgaaaatcactaccgtatatatgaggaacctcaaaccacc 38916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 206529 - 206597
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatcactgtcgtatatatgaggaacctcaaac 160  Q
    ||||||| |||||||||   ||||||||||  ||||||||||||  |||||| ||||||||||||||||    
T  206529 caaggtgtcgtatatatgcggtacacccaatggtgaaaatcactaccgtatacatgaggaacctcaaac 206597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 106538 - 106491
Alignment:
Q  179 cccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaa 226  Q
    |||||||||||||||||||||||| ||| || ||||||| ||||||||    
T  106538 cccacctaacaccaaaagcaagaggacctaaatctaataggcctaaaa 106491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 351374 - 351414
Alignment:
Q  92 caaggtgccgtatatatattgtacacccaaatgtgaaaatc 132  Q
    ||||||| ||||||||| ||||||||||||| |||||||||    
T  351374 caaggtgtcgtatatatgttgtacacccaaaggtgaaaatc 351414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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