View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20311_low_1 (Length: 437)

Name: NF20311_low_1
Description: NF20311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20311_low_1
NF20311_low_1
[»] chr6 (11 HSPs)
chr6 (135-432)||(27878708-27879002)
chr6 (136-423)||(27873990-27874272)
chr6 (136-423)||(1234736-1235018)
chr6 (136-423)||(26976131-26976413)
chr6 (134-416)||(30986552-30986831)
chr6 (136-429)||(18967915-18968194)
chr6 (182-423)||(30966689-30966923)
chr6 (19-135)||(32812866-32812979)
chr6 (141-330)||(21966677-21966860)
chr6 (155-307)||(23012520-23012667)
chr6 (135-187)||(30967674-30967726)
[»] chr4 (13 HSPs)
chr4 (134-432)||(30945475-30945769)
chr4 (135-432)||(30950182-30950475)
chr4 (135-423)||(42265938-42266221)
chr4 (135-423)||(42270657-42270940)
chr4 (142-423)||(24520031-24520307)
chr4 (135-423)||(48701820-48702103)
chr4 (136-423)||(48697131-48697414)
chr4 (136-429)||(10427318-10427597)
chr4 (149-347)||(48782850-48783031)
chr4 (263-371)||(1979269-1979375)
chr4 (147-215)||(30165900-30165968)
chr4 (202-242)||(1979565-1979604)
chr4 (138-215)||(36615361-36615438)
[»] chr3 (11 HSPs)
chr3 (136-429)||(54545911-54546200)
chr3 (135-423)||(5823274-5823557)
chr3 (136-423)||(5818513-5818795)
chr3 (135-361)||(2817262-2817486)
chr3 (144-240)||(4579264-4579360)
chr3 (136-292)||(24659136-24659287)
chr3 (150-325)||(31204781-31204950)
chr3 (292-429)||(24671173-24671298)
chr3 (276-334)||(35977103-35977161)
chr3 (135-180)||(25877086-25877131)
chr3 (381-429)||(4579129-4579177)
[»] chr5 (5 HSPs)
chr5 (136-423)||(34359991-34360273)
chr5 (135-423)||(41718445-41718728)
chr5 (136-423)||(41723171-41723453)
chr5 (136-429)||(29585300-29585588)
chr5 (155-423)||(34352283-34352546)
[»] chr8 (3 HSPs)
chr8 (135-423)||(9444091-9444374)
chr8 (136-423)||(9439372-9439654)
chr8 (153-209)||(4799315-4799371)
[»] chr2 (15 HSPs)
chr2 (145-423)||(5198664-5198937)
chr2 (147-429)||(15602906-15603183)
chr2 (135-302)||(825632-825797)
chr2 (136-302)||(830288-830452)
chr2 (143-408)||(28715816-28716070)
chr2 (145-325)||(30396920-30397096)
chr2 (352-429)||(830214-830291)
chr2 (352-429)||(825558-825635)
chr2 (268-367)||(8004161-8004259)
chr2 (266-359)||(13843921-13844014)
chr2 (136-240)||(31592910-31593014)
chr2 (292-361)||(13840387-13840456)
chr2 (156-216)||(12175768-12175828)
chr2 (136-207)||(13840240-13840311)
chr2 (377-429)||(30397136-30397188)
[»] chr7 (6 HSPs)
chr7 (141-429)||(16183636-16183910)
chr7 (136-429)||(30235047-30235339)
chr7 (135-361)||(8139963-8140183)
chr7 (135-325)||(8138459-8138645)
chr7 (136-240)||(36528415-36528518)
chr7 (149-297)||(5102606-5102749)
[»] scaffold0074 (1 HSPs)
scaffold0074 (136-429)||(27226-27505)
[»] chr1 (5 HSPs)
chr1 (136-429)||(46191269-46191546)
chr1 (136-369)||(4130173-4130401)
chr1 (141-325)||(30697120-30697300)
chr1 (136-240)||(364683-364786)
chr1 (281-361)||(30674787-30674865)


Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 135 - 432
Target Start/End: Original strand, 27878708 - 27879002
Alignment:
Q  135 ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 234  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878708 ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 27878807  T
Q  235 aaataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 334  Q
    |||||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878808 aaataaggggaaaaaa---ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 27878904  T
Q  335 cactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcttctctct 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27878905 cactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctct 27879002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 136 - 423
Target Start/End: Original strand, 27873990 - 27874272
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 235  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27873990 tgttaggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 27874089  T
Q  236 aataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc 335  Q
    |||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27874090 aataaagggaaaaaa---ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc 27874186  T
Q  336 actctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatattttt 423  Q
    ||||||||||||||||||||||||||||  |||||||| | ||||||||||||||||||||||| ||| |||| ||||||||||||||    
T  27874187 actctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttt 27874272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 136 - 423
Target Start/End: Complemental strand, 1235018 - 1234736
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 235  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1235018 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 1234919  T
Q  236 aataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc 335  Q
    ||||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  1234918 aataaggggaaaaaa---ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaatacc 1234822  T
Q  336 actctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatattttt 423  Q
    |||||||||||||||||||||||||| |  |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||    
T  1234821 actctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt 1234736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 136 - 423
Target Start/End: Original strand, 26976131 - 26976413
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 235  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976131 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 26976230  T
Q  236 aataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc 335  Q
    ||||| |||         ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26976231 aataaggggaaaaaa---ccaaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacc 26976327  T
Q  336 actctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatattttt 423  Q
    |||||||||||||||||||||||||| |  |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||    
T  26976328 actctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt 26976413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 134 - 416
Target Start/End: Complemental strand, 30986831 - 30986552
Alignment:
Q  134 cctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaa---cccct 230  Q
    ||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |||||||||   |||||    
T  30986831 cctgttaggtatcagagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaatattt-acgtggaaagtacccct 30986733  T
Q  231 caacaaataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa 330  Q
    |||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  30986732 caacaaataa-ggaaaaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaa 30986634  T
Q  331 ttaccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctca-caggagaaactaatt-tttctctcta 416  Q
    ||||||||||||||| ||||||| |||||      ||| ||||||||||||||||||||||  ||||||||||| || ||||||||||    
T  30986633 ttaccactctctcttgtaaatagaagaat------actgacactacctaggagaaacctcatgaggagaaactatttctttctctcta 30986552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 136 - 429
Target Start/End: Complemental strand, 18968194 - 18967915
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 235  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  18968194 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaaca 18968095  T
Q  236 aataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattac 334  Q
    ||||| |||         |||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||   |||||     
T  18968094 aataagggg---aaaaaaccacggggcaagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattag 18967998  T
Q  335 cactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcttctc 429  Q
    | ||||||| |  |||||||||||||| ||||          ||||||||||||||||| |||||||||  ||| |||| |||||||||| ||||    
T  18967997 c-ctctctcat-gaaataggagaatactaaca----------ctaggagaaacctcacaagagaaactatatttcctctttatatttttcctctc 18967915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 182 - 423
Target Start/End: Complemental strand, 30966923 - 30966689
Alignment:
Q  182 agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnnnnnccacggggcaagagtagagaactttcac 281  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  ||          |||||||||||||||||||||||||||    
T  30966923 agacgagaaaagaggaactgaacacacaatattt-acgtggaaacccatcaacaaataa--gggaaataaaatcacggggcaagagtagagaactttcac 30966827  T
Q  282 taagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacctagg 381  Q
    ||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||      ||| |  |||||||||    
T  30966826 taagtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaat------actgaggctacctagg 30966733  T
Q  382 agaaacctcac-aggagaaactaatt-tttctctctatattttt 423  Q
    ||||||||||| || |||||||| || |||||||||||||||||    
T  30966732 agaaacctcacaagtagaaactatttctttctctctatattttt 30966689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 32812866 - 32812979
Alignment:
Q  19 acgtcaacaattatacttctaaatatttgaagccatcataaattgaattctagttccataaagttggttgctcttaccaatggacagccccgcctaggcc 118  Q
    ||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32812866 acgtcaacaattatacttctaaatatttgag---atcataaattgaattctagttccataaagttggttgctcttaccaatggacagccccgcctaggcc 32812962  T
Q  119 tataacaaggttgaccc 135  Q
    |||||||||||||||||    
T  32812963 tataacaaggttgaccc 32812979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 141 - 330
Target Start/End: Complemental strand, 21966860 - 21966677
Alignment:
Q  141 ggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 240  Q
    ||||||| |||||| ||| ||||||||||| ||||| ||| | | ||||||||||||||| |||| | ||||||| | ||||||||||||||| ||||||    
T  21966860 ggtaccaaagtaacgaaacattatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataaataa 21966763  T
Q  241 agggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa 330  Q
    ||||          || ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| | ||| ||||||||||    
T  21966762 agggaaaaat----catggggcaagagtagagaactttcactaaatggaagaaattataagacctctctctaatttcaaagagagtacaa 21966677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 307
Target Start/End: Original strand, 23012520 - 23012667
Alignment:
Q  155 aaaatattatcacgcaactaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnnnnn 253  Q
    |||||||||||||||||||||||||||||||||| |||||| ||| |||||||||| || ||||||||||||| | || |||||| |||||             
T  23012520 aaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacatta-tttacgtggaaactcgtc-acaaattaaggg---gaaaaa 23012614  T
Q  254 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctct 307  Q
    |||  |||||||||||||||||||||||||||||  ||||||| || |||||||    
T  23012615 cca-tgggcaagagtagagaactttcactaagtgagagaaatttcaagacctct 23012667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 30967726 - 30967674
Alignment:
Q  135 ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacga 187  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  30967726 ctgttaggtaccagagtaacaaaatattatcaagcagctaaaataagagacga 30967674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 134 - 432
Target Start/End: Original strand, 30945475 - 30945769
Alignment:
Q  134 cctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa 233  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945475 cctgttaggtatcagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa 30945574  T
Q  234 caaataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 333  Q
    ||||||| ||           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30945575 caaataagggaaaaaat----cacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaatta 30945670  T
Q  334 ccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcttctctct 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30945671 ccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctct 30945769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 135 - 432
Target Start/End: Original strand, 30950182 - 30950475
Alignment:
Q  135 ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 234  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30950182 ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 30950281  T
Q  235 aaataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 334  Q
    |||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  30950282 aaataaggg----aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattac 30950377  T
Q  335 cactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcttctctct 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30950378 cactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctct 30950475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 135 - 423
Target Start/End: Complemental strand, 42266221 - 42265938
Alignment:
Q  135 ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 234  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266221 ctgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 42266122  T
Q  235 aaataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 334  Q
    |||||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266121 aaataaggggaaaaaa---ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 42266025  T
Q  335 cactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatattttt 423  Q
    |||||||||||||||||||||||||||||  |||||||| | ||||||||||||||||||||||| ||| |||| ||||||||||||||    
T  42266024 cactctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttt 42265938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 135 - 423
Target Start/End: Complemental strand, 42270940 - 42270657
Alignment:
Q  135 ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 234  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270940 ctgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 42270841  T
Q  235 aaataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 334  Q
    |||||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270840 aaataaggggaaaaaa---ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 42270744  T
Q  335 cactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatattttt 423  Q
    |||||||||||||||||||||||||||||  |||||||| | ||||||||||||||||||||||| ||| |||| ||||||||||||||    
T  42270743 cactctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttt 42270657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 142 - 423
Target Start/End: Original strand, 24520031 - 24520307
Alignment:
Q  142 gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaa 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  24520031 gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 24520130  T
Q  242 gggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctc 341  Q
    |||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24520131 gggaaaaaa---ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctc 24520227  T
Q  342 tcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatattttt 423  Q
    |||||||||||||||||||| |  |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||    
T  24520228 tcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt 24520307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 135 - 423
Target Start/End: Original strand, 48701820 - 48702103
Alignment:
Q  135 ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 234  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701820 ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 48701919  T
Q  235 aaataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 334  Q
    |||||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  48701920 aaataaggggaaaaaa---ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaatac 48702016  T
Q  335 cactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatattttt 423  Q
    ||||||||||||||||||||||||||| |  |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||    
T  48702017 cactctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt 48702103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 136 - 423
Target Start/End: Original strand, 48697131 - 48697414
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 235  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697131 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 48697230  T
Q  236 aataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc 335  Q
    ||||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  48697231 aataaggggaaaaaaa--ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaatacc 48697328  T
Q  336 actctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatattttt 423  Q
    |||||||||||||||||||||||||| |  |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||    
T  48697329 actctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt 48697414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 136 - 429
Target Start/End: Complemental strand, 10427597 - 10427318
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 235  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10427597 tgttaggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaaca 10427498  T
Q  236 aataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattac 334  Q
    ||||| |||         | |||||| || |||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||   ||||||    
T  10427497 aataagggg---aaaaaactacggggaaaaagtagataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattac 10427401  T
Q  335 cactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcttctc 429  Q
    | |||||||||  |||||||||||||| ||||          |||||||||||||||||||||||||||  ||| ||||||||||||||| ||||    
T  10427400 c-ctctctctt-gaaataggagaatactaaca----------ctaggagaaacctcacaggagaaactatatttcctctctatatttttcctctc 10427318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 149 - 347
Target Start/End: Complemental strand, 48783031 - 48782850
Alignment:
Q  149 agtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnn 248  Q
    |||| |||||||||||||||| | |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||   ||||||||||||||||        
T  48783031 agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaata-tttacgtggaaatttctcaacaaataaagggaaaa 48782933  T
Q  249 nnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat 347  Q
          || |||         |||||||||||||||||||||||||||| | |||||||||||||||||| |  |||||||||||||||||||||||||    
T  48782932 a-----catggg---------gagaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat 48782850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 263 - 371
Target Start/End: Complemental strand, 1979375 - 1979269
Alignment:
Q  263 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaataca 362  Q
    ||||||||| |||||||| |||| ||||||||||||| |||||||||  |||| ||||||| ||| | |||||||||||||||||||| ||||||||||     
T  1979375 aagagtagataactttcagtaagaggaagaaattacacgacctctct--aaatgcaaggagggtatatttaccactctctcttataaacaggagaatact 1979278  T
Q  363 aacactaac 371  Q
    | |||||||    
T  1979277 agcactaac 1979269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 30165968 - 30165900
Alignment:
Q  147 agagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattt 215  Q
    |||||||||||||| |||||| |||||||||||||| | ||||||| | ||| |||||||| |||||||    
T  30165968 agagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatattt 30165900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 1979604 - 1979565
Alignment:
Q  202 aacacacaatattttacgtggaaacccctcaacaaataaag 242  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  1979604 aacacacaatattt-acgtggaaacccctcaacaaataaag 1979565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 36615361 - 36615438
Alignment:
Q  138 ttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattt 215  Q
    |||||||| ||||||| ||||||||||| | ||  |||||||||| | |||||||||| ||| ||||| ||| |||||    
T  36615361 ttaggtactagagtaataaaatattatcgcacagttaaaataagatatgagaaaagagaaaccgaacatacattattt 36615438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 136 - 429
Target Start/End: Complemental strand, 54546200 - 54545911
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 235  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  54546200 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatattt-acgtggaaacccctcaaca 54546102  T
Q  236 aataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc 335  Q
    ||||| |||         ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  54546101 aataaggggaaaaaa---ccacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattacc 54546005  T
Q  336 actctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcttctc 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  54546004 actctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctc 54545911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 135 - 423
Target Start/End: Original strand, 5823274 - 5823557
Alignment:
Q  135 ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 234  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823274 ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 5823373  T
Q  235 aaataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 334  Q
    |||||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5823374 aaataaggggaaaaaa---ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattac 5823470  T
Q  335 cactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatattttt 423  Q
    ||||||||||||||||||||||||||| |  |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||    
T  5823471 cactctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt 5823557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 136 - 423
Target Start/End: Original strand, 5818513 - 5818795
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5818513 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaact 5818612  T
Q  236 aataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc 335  Q
    ||||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5818613 aataaggggaaaaaa---ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacc 5818709  T
Q  336 actctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatattttt 423  Q
    |||||||||||||||||||||||||| |  |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||    
T  5818710 actctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt 5818795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 135 - 361
Target Start/End: Original strand, 2817262 - 2817486
Alignment:
Q  135 ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 234  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817262 ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 2817361  T
Q  235 aaataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 334  Q
    |||||| ||          |||| ||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| ||    
T  2817362 aaataaggg----aaaaaaccacagggcaagagtaaagaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcac 2817457  T
Q  335 ca--ctctctcttataaataggagaatac 361  Q
    ||  |||||||||||||||||||||||||    
T  2817458 cactctctctcttataaataggagaatac 2817486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 4579360 - 4579264
Alignment:
Q  144 accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4579360 accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 4579264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 136 - 292
Target Start/End: Original strand, 24659136 - 24659287
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 235  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24659136 tgttaggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaaca 24659235  T
Q  236 aataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga 292  Q
    ||||| |||         |||||||||||||||  ||||||||||||||||||||||    
T  24659236 aataagggg---aaaaaaccacggggcaagagt--agaactttcactaagtggaaga 24659287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 150 - 325
Target Start/End: Original strand, 31204781 - 31204950
Alignment:
Q  150 gtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnn 249  Q
    |||||||||||||| ||||||  ||||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||||  ||         
T  31204781 gtaacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaaataagaggaaaaa 31204878  T
Q  250 nnnnccacgg-ggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 325  Q
         ||||| ||||| ||||||||||||||||||||||| | ||||||||  ||  ||||||||||| ||||||||    
T  31204879 at---cacggaggcaatagtagagaactttcactaagtgggaaaaattacaaaac--ctctctaaatataaggagag 31204950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 429
Target Start/End: Original strand, 24671173 - 24671298
Alignment:
Q  292 aaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctca 391  Q
    |||||||| ||| |||||||||||||||||||||   ||||||| |||||||||  |||||||||||||| |||||||          ||||||||||||    
T  24671173 aaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaacacta----------ggagaaacctca 24671260  T
Q  392 caggagaaactaatttttctctctatatttttcttctc 429  Q
    ||||||||||||  ||| ||||||||||||||| ||||    
T  24671261 caggagaaactatatttcctctctatatttttcctctc 24671298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 35977161 - 35977103
Alignment:
Q  276 tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 334  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||    
T  35977161 tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac 35977103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 25877131 - 25877086
Alignment:
Q  135 ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataa 180  Q
    ||||||||||||||| ||||| |||||||| |||||||||||||||    
T  25877131 ctgttaggtaccagaataacataatattattacgcaactaaaataa 25877086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 381 - 429
Target Start/End: Complemental strand, 4579177 - 4579129
Alignment:
Q  381 gagaaacctcacaggagaaactaatttttctctctatatttttcttctc 429  Q
    |||||||||||||||||||||||  ||| ||||||||||||||| ||||    
T  4579177 gagaaacctcacaggagaaactatatttcctctctatatttttcctctc 4579129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 136 - 423
Target Start/End: Complemental strand, 34360273 - 34359991
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 235  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34360273 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaaca 34360174  T
Q  236 aataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc 335  Q
    ||||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34360173 aataaggggaaaaaa---ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacc 34360077  T
Q  336 actctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatattttt 423  Q
    |||||||||||||||||||||||||| |  |||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||    
T  34360076 actctctcttataaataggagaatacta--actaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttt 34359991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 135 - 423
Target Start/End: Complemental strand, 41718728 - 41718445
Alignment:
Q  135 ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 234  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718728 ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 41718629  T
Q  235 aaataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 334  Q
    |||||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  41718628 aaataaggggaaaaaa---ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaatac 41718532  T
Q  335 cactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatattttt 423  Q
    ||||||||||||||||||||||||||| |  |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||    
T  41718531 cactctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt 41718445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 136 - 423
Target Start/End: Complemental strand, 41723453 - 41723171
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 235  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723453 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 41723354  T
Q  236 aataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc 335  Q
    ||||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  41723353 aataaggggaaaaaa---ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaatacc 41723257  T
Q  336 actctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatattttt 423  Q
    |||||||||||||||||||||||||| |  |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||    
T  41723256 actctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt 41723171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 136 - 429
Target Start/End: Original strand, 29585300 - 29585588
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 235  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585300 tgttaggtatcagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 29585399  T
Q  236 aataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc 335  Q
    ||||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  29585400 aataaggggaaaaaa---ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattacc 29585496  T
Q  336 actctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcttctc 429  Q
    |||||||||||||||||||||||||| |  ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29585497 actctctcttataaataggagaatacta--actaatacaaactaggagaaacctcacaggagaaactaatttttctctctatatttttcctctc 29585588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 155 - 423
Target Start/End: Complemental strand, 34352546 - 34352283
Alignment:
Q  155 aaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnnnnnc 254  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||         |    
T  34352546 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa---c 34352450  T
Q  255 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34352449 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatagg 34352350  T
Q  355 agaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatattttt 423  Q
    ||||||| |  |||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||    
T  34352349 agaatacta--actaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttt 34352283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 135 - 423
Target Start/End: Original strand, 9444091 - 9444374
Alignment:
Q  135 ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 234  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444091 ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 9444190  T
Q  235 aaataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 334  Q
    |||||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  9444191 aaataaggggaaaaaa---ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaatac 9444287  T
Q  335 cactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatattttt 423  Q
    ||||||||||||||||||||||||||| |  |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||    
T  9444288 cactctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt 9444374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 136 - 423
Target Start/End: Original strand, 9439372 - 9439654
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 235  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439372 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 9439471  T
Q  236 aataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc 335  Q
    ||||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  9439472 aataaggggaaaaaa---ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaatacc 9439568  T
Q  336 actctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatattttt 423  Q
    |||||||||||||||||||||||||| |  |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||    
T  9439569 actctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt 9439654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
Q  153 acaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacaca 209  Q
    ||||||||||||||| |  ||||||||||||| |||||||||| || ||||||||||    
T  4799371 acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca 4799315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 145 - 423
Target Start/End: Original strand, 5198664 - 5198937
Alignment:
Q  145 ccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaaggg 244  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5198664 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 5198763  T
Q  245 nnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct 344  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  5198764 aaaaaa---ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctct 5198860  T
Q  345 tataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatattttt 423  Q
    ||||||||||||||||| |  |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||    
T  5198861 tataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt 5198937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 147 - 429
Target Start/End: Complemental strand, 15603183 - 15602906
Alignment:
Q  147 agagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnn 246  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||      
T  15603183 agagtaagaaaatattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa 15603084  T
Q  247 nnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctctta 346  Q
           ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |||| |||||||||||| ||| ||||     
T  15603083 aaaa---ccacggggcaagagtagagaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctatcttg 15602987  T
Q  347 taaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcttctc 429  Q
    ||||||||||||||| |  |||||||||  ||| ||||||||||| || | || ||||||||||| |||||||||||| ||||    
T  15602986 taaataggagaatacta--actaacacttactaagagaaacctcatagaaaaatctaatttttctttctatatttttcctctc 15602906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 135 - 302
Target Start/End: Complemental strand, 825797 - 825632
Alignment:
Q  135 ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 234  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  825797 ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaac 825698  T
Q  235 aaataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacagga 302  Q
    |||||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  825697 aaataagggg--aaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga 825632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 136 - 302
Target Start/End: Complemental strand, 830452 - 830288
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 235  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  830452 tgttaggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 830353  T
Q  236 aataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacagga 302  Q
    ||||| |||         ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  830352 aataagggg--aaaaaaaccacggggcaagagtggagaactttcactaagtggaagaaattacagga 830288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 143 - 408
Target Start/End: Complemental strand, 28716070 - 28715816
Alignment:
Q  143 taccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaag 242  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||  |||||| |    
T  28716070 taccagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaatattt-acgtggaaacccctcattaaataagg 28715972  T
Q  243 ggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 342  Q
    ||         ||||  |  |||| |||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  | |    
T  28715971 ggaaaaa----ccacaagagaagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgttt 28715876  T
Q  343 cttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt 408  Q
    | |||||||||||||||      |||||||||||||||||||||||| ||| ||||||||| ||||    
T  28715875 cctataaataggagaat------actaacactacctaggagaaaccttacaagagaaactattttt 28715816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 145 - 325
Target Start/End: Original strand, 30396920 - 30397096
Alignment:
Q  145 ccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaaggg 244  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||||| ||     
T  30396920 ccagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctcaacaaataaggg- 30397016  T
Q  245 nnnnnnnnnccacggggcaagagtagagaac-tttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 325  Q
              ||| |||| |||||||||||| |||||||||||||||||||||||| ||||||| |||| ||||||||||||    
T  30397017 --aaaaaaatcacagggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagag 30397096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 352 - 429
Target Start/End: Complemental strand, 830291 - 830214
Alignment:
Q  352 aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcttctc 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  830291 aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctc 830214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 352 - 429
Target Start/End: Complemental strand, 825635 - 825558
Alignment:
Q  352 aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcttctc 429  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  825635 aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctc 825558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 268 - 367
Target Start/End: Complemental strand, 8004259 - 8004161
Alignment:
Q  268 tagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaacac 367  Q
    |||| |||||||||| | |||||||||||| |  |||||||| |||||  ||| ||||||||||||| |||||||||||||||||||||||||| |||||    
T  8004259 tagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaattac-actctctcttataaataggagaatactaacac 8004161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 266 - 359
Target Start/End: Original strand, 13843921 - 13844014
Alignment:
Q  266 agtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaat 359  Q
    |||| |||| ||||| ||||||||||||||||||||||| || | |||||||||| ||| || |||||||||||| | ||| ||||||||||||    
T  13843921 agtatagaattttcattaagtggaagaaattacaggacccctttataaatacaagaagaataaaattaccactctattttaaaaataggagaat 13844014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 31592910 - 31593014
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 235  Q
    |||| |||| || ||||||| ||||||||||| ||  || ||||||||||||||||||||||||  |||| |||||| |||||||||||| | ||||| |    
T  31592910 tgttgggtatcaaagtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaata 31593009  T
Q  236 aataa 240  Q
    |||||    
T  31593010 aataa 31593014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 13840387 - 13840456
Alignment:
Q  292 aaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac 361  Q
    ||||||||  ||||||||||||||| ||||||||||||||||| | ||||||||| |||||  |||||||    
T  13840387 aaattacaaaacctctctctaaatataaggagagtacaattacaattctctcttaaaaataaaagaatac 13840456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 12175768 - 12175828
Alignment:
Q  156 aaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatatttt 216  Q
    ||||||||||||||||||||||||| ||| || |||| || || |||||||||||||||||    
T  12175768 aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt 12175828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 13840240 - 13840311
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacaca 207  Q
    |||| ||||||||| |||||||||||||||||| || || ||||| ||| |||||| ||||||| |||||||    
T  13840240 tgttgggtaccagaataacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccgaacaca 13840311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 30397136 - 30397188
Alignment:
Q  377 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcttctc 429  Q
    |||||||||| ||||||||||||||||  ||| ||||||||||| ||| ||||    
T  30397136 ctaggagaaatctcacaggagaaactatatttcctctctatattgttcctctc 30397188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 1e-79; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 141 - 429
Target Start/End: Original strand, 16183636 - 16183910
Alignment:
Q  141 ggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 240  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16183636 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 16183735  T
Q  241 agggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactc 339  Q
     |||         ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||   ||||||| |||    
T  16183736 gggg---aaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctc 16183831  T
Q  340 tctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcttctc 429  Q
    ||||||  |||||||||||||| ||||          |||||||||||||||||||||||||||  ||| ||||||||||||||| ||||    
T  16183832 tctctt-gaaataggagaatactaaca----------ctaggagaaacctcacaggagaaactatatttcctctctatatttttcctctc 16183910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 136 - 429
Target Start/End: Complemental strand, 30235339 - 30235047
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 235  Q
    |||| |||||||||||| ||||||||||| || || ||||||||| | | |||||||||||||||||||||||||||||| ||||||||||||||||||     
T  30235339 tgttgggtaccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaacg 30235241  T
Q  236 aataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctc-taaatacaaggagagtacaattac 334  Q
    ||||| |||         |||||||  ||||||||| |||||||| ||| | ||||||||||||||||||||||| ||  || |||||||||||||||||    
T  30235240 aataaggggaaaaaaa--ccacgggataagagtagaaaactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaattac 30235143  T
Q  335 cactctctcttataaataggagaatacaaacactaacactacctaggagaaacctca-caggagaaactaatttttctctctatatttttcttctc 429  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||  |||||||||||||||||||||||||||||||| ||||    
T  30235142 cactctctcttataaataggagaatacaaacactaacactacgtaagagaaacctcataaggagaaactaatttttctctctatatttttcctctc 30235047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 135 - 361
Target Start/End: Original strand, 8139963 - 8140183
Alignment:
Q  135 ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 234  Q
    ||||| ||||||||||||||||||||||||||| || ||||||||||||| |||||||||| |||||||| ||||||| |||| ||||||||||||||||    
T  8139963 ctgttgggtaccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaata-tttatgtggaaacccctcaac 8140061  T
Q  235 aaataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 334  Q
    |||||| |||         ||| |||| |||| |||| |||||||||| |||||||||||||| | ||||||||||| |||||||||||||   ||||||    
T  8140062 aaataagggg---agaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataagacctctctcttaatacaaggagagacaaattac 8140158  T
Q  335 cactctctcttataaataggagaatac 361  Q
    | |||||||||  ||||||||||||||    
T  8140159 c-ctctctctt-gaaataggagaatac 8140183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 135 - 325
Target Start/End: Original strand, 8138459 - 8138645
Alignment:
Q  135 ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 234  Q
    ||||| |||| ||||||| |||| |||||||||||| |||||||||||||||||||||||  |||| |||||||| || || | |||||||||||| |||    
T  8138459 ctgttgggtagcagagtatcaaagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagtaatt-atgtggaaaccccttaac 8138557  T
Q  235 aaataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 325  Q
    ||| || |||         ||||| ||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  8138558 aaacaaggggagaaaa---ccacgaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagag 8138645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 36528415 - 36528518
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 235  Q
    |||| |||| |||||||||||| ||  || ||||||||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| ||     
T  36528415 tgttgggtatcagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctccacg 36528513  T
Q  236 aataa 240  Q
    |||||    
T  36528514 aataa 36528518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 297
Target Start/End: Original strand, 5102606 - 5102749
Alignment:
Q  149 agtaacaaaatattatcacgcaactaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnn 247  Q
    ||||||||||||||||||| |||||||||||| ||| ||| |||||||| ||| || ||| |||| ||||| | |||| |||||||||||||| |||       
T  5102606 agtaacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataata-tttacat-gaaaaccctcaacaaataagggg--- 5102700  T
Q  248 nnnnnnccacggggcaagagtagagaactttcactaagtggaagaaatta 297  Q
          ||| || ||||||||||| |||||| ||||||||| ||||||||    
T  5102701 -aaaaaccatggagcaagagtagataacttttactaagtgggagaaatta 5102749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 136; Significance: 9e-71; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 136 - 429
Target Start/End: Original strand, 27226 - 27505
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 235  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  27226 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaaca 27325  T
Q  236 aataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattac 334  Q
    ||||| |||         ||||||||||||||||||||||||||||||||||||||| |||||||  || |||||||||||||||||||||   ||||||    
T  27326 aataagggg---aaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagagacaaattac 27422  T
Q  335 cactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcttctc 429  Q
    || ||||||||  ||||||| |||||| ||||          |||||||||||||||||||||||||||  ||| ||||||||||||||| ||||    
T  27423 ca-tctctctt-gaaataggtgaatactaaca----------ctaggagaaacctcacaggagaaactatatttcctctctatatttttcctctc 27505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 136 - 429
Target Start/End: Complemental strand, 46191546 - 46191269
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 235  Q
    ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  46191546 tgttaggaaccagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaa--cacaatattttacgtggaaacccctcaaca 46191449  T
Q  236 aataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattac 334  Q
    ||||| |||         ||||||| ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||   ||||||    
T  46191448 aataagggg---aaaaaaccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaattac 46191352  T
Q  335 cactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcttctc 429  Q
    | |||||||||  |||||||||||||| ||||          |||||||||||||||||||||||||||  ||| ||||||||||||||| ||||    
T  46191351 c-ctctctctt-gaaataggagaatactaaca----------ctaggagaaacctcacaggagaaactatatttcctctctatatttttcctctc 46191269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 136 - 369
Target Start/End: Complemental strand, 4130401 - 4130173
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 235  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| |||||||||    
T  4130401 tgttaggtacttgagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaa-aatttacgtggaaatccctcaaca 4130303  T
Q  236 aataaagggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattac 334  Q
    |||||||||         ||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||   ||||||    
T  4130302 aataaaggg---aaaaaaccacggggcaagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagagacaaattac 4130206  T
Q  335 cactctctcttataaataggagaatacaaacacta 369  Q
    | |||||||||  |||||||| ||||| |||||||    
T  4130205 c-ctctctctt-gaaataggacaatactaacacta 4130173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 141 - 325
Target Start/End: Original strand, 30697120 - 30697300
Alignment:
Q  141 ggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 240  Q
    ||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||    
T  30697120 ggtactagagtaacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaata-tttacgtggaaacccctcaacaaataa 30697218  T
Q  241 agggnnnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 325  Q
     |||         ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  30697219 gggg---aaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag 30697300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 364786 - 364683
Alignment:
Q  136 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 235  Q
    |||| ||||| ||||||| |||||| |||||  ||| |||||||| ||| ||||||| |||||  || ||||||||| ||||||| ||| ||||| |||     
T  364786 tgtttggtacgagagtaataaaataatatcatacaattaaaataatagatgagaaaaaaggaatcgaccacacaata-tttacgttgaatccccttaacc 364688  T
Q  236 aataa 240  Q
    |||||    
T  364687 aataa 364683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 361
Target Start/End: Original strand, 30674787 - 30674865
Alignment:
Q  281 ctaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac 361  Q
    ||||||||||||||||| |  ||||||| ||||| | |||||||| ||||||| || |||||||| | |||||||||||||    
T  30674787 ctaagtggaagaaattatacaacctctcactaaaaataaggagagaacaatta-cattctctcttgt-aataggagaatac 30674865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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