View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20311_low_2 (Length: 381)
Name: NF20311_low_2
Description: NF20311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20311_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 55156466 - 55156096
Alignment:
| Q |
1 |
cgcaaacgaattctacttgtgccccttgatgttcctgcctgcaatccatcgatcgaatcatcccactacataaaataagcaataaaatcaaggcatctga |
100 |
Q |
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| T |
55156466 |
cgcaaacgaattctacttgtgccccttgatgttcctgcctgcaatccatcgatcgaatcatcccactacataaaataagcaataaaatcaaggcatcgga |
55156367 |
T |
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| Q |
101 |
agaacaaaaaattacaagcatggttgttcatgagatattttgttgcaataaactagtatttttagagtaaaaaggaatcaaccagaaatacaaaaaatta |
200 |
Q |
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| T |
55156366 |
agaacaaaaaattacaagcatggttgttcatgagatattttgttgcaacaaactagtatttttagagtaaaaaggaatcaaccagaaatacaaaaaatta |
55156267 |
T |
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| Q |
201 |
caaaacacatttacctcatgagtacgagcagaactatttgggttcatcaagctaggataatgggaagttgccttcgtaagatttgcctcatcattgttaa |
300 |
Q |
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| T |
55156266 |
caaaacacatttacctcatgagtacgagcagaactatttgggttcatcaagctaggatgatgggaagttgccttcgtaagatttgcctcatcattgttaa |
55156167 |
T |
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| Q |
301 |
tatttaggcaagtttgtgggttgggtacatttgcatctttactctggttttccatttgtggctcctggttc |
371 |
Q |
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| T |
55156166 |
tatttaggcaagtttgtgggttgggtacatttgcatctttactctggttttccatttgtggctcctggttc |
55156096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 54573199 - 54572829
Alignment:
| Q |
1 |
cgcaaacgaattctacttgtgccccttgatgttcctgcctgcaatccatcgatcgaatcatcccactacataaaataagcaataaaatcaaggcatctga |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
54573199 |
cgcaaacgaattctacttgtgccccttactgttcctgcctgcaatccatcgatcgaatcatcccactacataaaataagcaataaaatcaaggcatcgga |
54573100 |
T |
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| Q |
101 |
agaacaaaaaattacaagcatggttgttcatgagatattttgttgcaataaactagtatttttagagtaaaaaggaatcaaccagaaatacaaaaaatta |
200 |
Q |
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| T |
54573099 |
agaacaaaaaattacaagcatggttgttcatgagatattttgttgcaacaaactagtatttttagagtaaaaaggaatcaaccagaaatacaaaaaatta |
54573000 |
T |
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| Q |
201 |
caaaacacatttacctcatgagtacgagcagaactatttgggttcatcaagctaggataatgggaagttgccttcgtaagatttgcctcatcattgttaa |
300 |
Q |
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| T |
54572999 |
caaaacacatttacctcatgagtacgagcagaactatttgggttcatcaagctaggatgatgggaagttgccttcgtaagatttgcctcatcattgttaa |
54572900 |
T |
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| Q |
301 |
tatttaggcaagtttgtgggttgggtacatttgcatctttactctggttttccatttgtggctcctggttc |
371 |
Q |
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| T |
54572899 |
tatttaggcaagtttgtgggttgggtacatttgcatctttactctggttttccatttgtggctcctggttc |
54572829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 298 - 373
Target Start/End: Complemental strand, 4097734 - 4097659
Alignment:
| Q |
298 |
taatatttaggcaagtttgtgggttgggtacatttgcatctttactctggttttccatttgtggctcctggttcat |
373 |
Q |
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||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4097734 |
taatatttaggcaagcttgtcagttggatacatttgcatctttactctggttttccatttgtggctcctgattcat |
4097659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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