View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20311_low_3 (Length: 369)
Name: NF20311_low_3
Description: NF20311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20311_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 355
Target Start/End: Complemental strand, 2409094 - 2408751
Alignment:
| Q |
10 |
gcagagacaggtagcaaactgttcatatgggattataaacttgatggtatactccannnnnnnatccaacaacatatgaacctagaaatcactttgatgg |
109 |
Q |
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| T |
2409094 |
gcagtgacaggtagcaaagtgttcatatgggatgatgaacttgatggtatactccatgtttttatccaacaacatatgaacctagaaatcactttgatgg |
2408995 |
T |
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| Q |
110 |
acaatgacaagttggaaaatattcatcaagggaatcaaaatacctcaaacgcaaatatttcacttgttttccatgcacaatttcgattgttgatgagctt |
209 |
Q |
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| T |
2408994 |
acaatgacaagttggaaaatattcat-aagggaatcaaaatacctcaaacacaaatatttcacttgttttccatgcacaatttcgattgttgatgagctt |
2408896 |
T |
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| Q |
210 |
caaagcacggtaatgatttagcaccaaagaacagtatacatcacttcttcttccttgccgtcacaagcttgcaactctttattcccctttggatttctat |
309 |
Q |
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| T |
2408895 |
caaagcacggaaatgatttagcaccaaagaacattatacatcacttcttcttccttgccgtcacaagcttgcaactctttattcccctttggatttctat |
2408796 |
T |
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| Q |
310 |
ttctcaaaaccctaaaatgcagggacgaaaataaaaaggatgtttt |
355 |
Q |
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| T |
2408795 |
ttctcaaaaccctaaaatgcaggggcgaaaat-aaaaggatgtttt |
2408751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 79 - 346
Target Start/End: Complemental strand, 2412485 - 2412220
Alignment:
| Q |
79 |
caacatatgaacctagaaatcactttgatggacaatgacaagttggaaaatattcatcaagggaatcaaaatacctcaaacgcaaatatttcacttgttt |
178 |
Q |
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| T |
2412485 |
caacatctgaaccaataaatcactttgattggcactgacaagttgcaaactattcat-aagggaatcaaaatacctcaaacacaaagattccacttgtct |
2412387 |
T |
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| Q |
179 |
tccatgcacaatttcgattgttgatgagcttcaaagcacggtaatgatttagcaccaaagaacagtatacatcacttcttcttccttgccgtcacaagct |
278 |
Q |
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|| ||||| |||| ||| ||||||||||| |||| | | |||||||||||||| ||||| || |||||| ||||||||||| || ||||||||| |
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| T |
2412386 |
tcg-tgcacgattttgatctttgatgagctttgaagcgctaaattgatttagcaccaacgaacaataaacatcatttcttcttcctcaccatcacaagct |
2412288 |
T |
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| Q |
279 |
tgcaactctttattcccctttggatttctatttctcaaaaccctaaaatgcagggacgaaaataaaaa |
346 |
Q |
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| T |
2412287 |
cgcaactctttattcccctttgactctttatttctcataaccctaaaatgcagggacaaaaatgaaaa |
2412220 |
T |
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