View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20311_low_4 (Length: 246)
Name: NF20311_low_4
Description: NF20311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20311_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 41432839 - 41433046
Alignment:
| Q |
18 |
ataactaaactcgaatagcataatatgagtaatattatgacttttcacttcaagttttcacacacacaaacttaataaatacaatccannnnnnnnnnnn |
117 |
Q |
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| T |
41432839 |
ataactaaactcgaatagcataataggagtaatattatgactttttgcttcaagttttcacacacacaaacttaataaatacaatccatttttatttttt |
41432938 |
T |
|
| Q |
118 |
nnnn----actcaaactactattctttaaaaggtttcacctattcattgtattaaaaattttaagcacatatcgaataagaatagcatcattagacatta |
213 |
Q |
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| T |
41432939 |
ttggttttactcaaactactattctttaaaaggtttcacctattcattgtattaaaaattttaagcacatatctaataagaatagcatcattagacatta |
41433038 |
T |
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| Q |
214 |
agttcaat |
221 |
Q |
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|||||||| |
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| T |
41433039 |
agttcaat |
41433046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 16468120 - 16468036
Alignment:
| Q |
19 |
taactaaactcgaatagcataatatgagtaatattatgacttttcacttcaagttttcacacacacaaacttaataaatacaatc |
103 |
Q |
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| T |
16468120 |
taactaaactagaatagcataataggagtaatattatgacttttcacttcaaattttcacacacacaaacctaataaatacaatc |
16468036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 16467781 - 16467704
Alignment:
| Q |
149 |
tcacctattcattgtattaaaaattttaagcacatatcgaataaga-----atagcatcattagacattaagttcaat |
221 |
Q |
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| T |
16467781 |
tcacttattcattgtatttaaaattttaagcacagatctaataagaatagaatagcatcattaaacattaagttcaat |
16467704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 35381356 - 35381439
Alignment:
| Q |
17 |
aataactaaactcgaatagcataatatgag---taatattatgacttttcacttcaagttttcacacacacaaacttaataaatac |
99 |
Q |
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|||||||||||| |||| | |||||| ||| ||||||||||||||||||| ||| |||| ||||||||||| | ||||||||| |
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| T |
35381356 |
aataactaaactagaattggataataggagtaataatattatgacttttcac--caaattttaacacacacaaattaaataaatac |
35381439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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