View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20311_low_5 (Length: 245)
Name: NF20311_low_5
Description: NF20311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20311_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 29857446 - 29857653
Alignment:
| Q |
14 |
gaagaacaatagaaggtgatgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaaa |
113 |
Q |
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| T |
29857446 |
gaagaacaatagaaggtgatgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaaa |
29857545 |
T |
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| Q |
114 |
actttcacctgatttataatcacaagcatgaataatttcacccttgaattcaccacctaacccttcaatataaggcacaacacactctgcattctcacca |
213 |
Q |
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| T |
29857546 |
actttcacctgatttataatcacaagcatgaataatttcacccttgaattcaccacctaacccttcaatataaggcacaacacactctgcattctcacca |
29857645 |
T |
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| Q |
214 |
gtagcaac |
221 |
Q |
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|||||||| |
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| T |
29857646 |
gtagcaac |
29857653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 888387 - 888481
Alignment:
| Q |
19 |
acaatagaaggtgatgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaaa |
113 |
Q |
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| T |
888387 |
acaatagaaggagcagcatcatgattacaaagatccaaacaaacttccatacctgaatttccacatccaacaaccaaaactttcttccctctaaa |
888481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 17408190 - 17408075
Alignment:
| Q |
33 |
tgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaaaactttcacctgatttataa |
132 |
Q |
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| T |
17408190 |
tgcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttccactataattcacaccagatttatag |
17408091 |
T |
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| Q |
133 |
tcacaagcatgaataa |
148 |
Q |
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| T |
17408090 |
tcacaagcatgcataa |
17408075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 165
Target Start/End: Original strand, 39733400 - 39733540
Alignment:
| Q |
25 |
gaaggtgatgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaaaactttcacctg |
124 |
Q |
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| T |
39733400 |
gaaggtaaagcatgatgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctg |
39733499 |
T |
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| Q |
125 |
atttataatcacaagcatgaataatttcacccttgaattca |
165 |
Q |
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| T |
39733500 |
acttgtaatcacaagcataaacaacttcacctttgaattca |
39733540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 39839558 - 39839418
Alignment:
| Q |
25 |
gaaggtgatgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaaaactttcacctg |
124 |
Q |
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| T |
39839558 |
gaaggtaaagcatgatgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctg |
39839459 |
T |
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| Q |
125 |
atttataatcacaagcatgaataatttcacccttgaattca |
165 |
Q |
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| T |
39839458 |
acttgtaatcacaagcataaacaacttcacctttgaattca |
39839418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 50667908 - 50667841
Alignment:
| Q |
46 |
caaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaaa |
113 |
Q |
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| T |
50667908 |
caaagatctaaacaaacttccataccagaattaccacaaccaacaaccaaaactttcttccctctaaa |
50667841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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