View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20312_high_11 (Length: 405)
Name: NF20312_high_11
Description: NF20312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20312_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 388
Target Start/End: Original strand, 33840310 - 33840681
Alignment:
| Q |
12 |
gatgaatcgtcgtt-ttattaatatatctcattttgattacctaaagaaaacgtattcataannnnnnngtgatattaaaatgaatcatgtctctctttt |
110 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| | | |||||||||| ||||||||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
33840310 |
gatgaatcgtcgttattattaatatatctcattttgtcttcttaaagaaaacatattcataattttttgg-gatattaaaatgaatcacgtctctctttt |
33840408 |
T |
|
| Q |
111 |
actactccgtacttctccatcatgcggacgatcataatgtcaactgaaatgggcctctcacacccatagcataaaaaatgtgtgtcactcatccatctta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33840409 |
actactccgtacttctccatcatgcggacaatcataatgtcaactgaaatgggcctctcacacgcatagcataaaaaatgtgtgtcactcatccatctta |
33840508 |
T |
|
| Q |
211 |
tctttcaaacgtgtcgttcatctaatcgaacatagcactgtatagtacaatcaaattcaactctcaacaaattttctccaccgcgttataaatttgcaca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33840509 |
tctttcaaacgtgtcgttcatctaatcgaacacagcactgtatagtacaatcaaattcaactctcaacaaattttctccaccgcgttataaatttgcaaa |
33840608 |
T |
|
| Q |
311 |
ctatatgtcatgcaaaagcatccctcataatacatacatggcagtattaattattttaagccacctaatgcaaaacaa |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33840609 |
ctatatgtcatgcaaaagcatccctcataatacat-----gcagtattaattattttaagccacctaatgcaaaacaa |
33840681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University