View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20312_high_2 (Length: 648)
Name: NF20312_high_2
Description: NF20312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20312_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 565; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 1 - 627
Target Start/End: Complemental strand, 12703261 - 12702631
Alignment:
| Q |
1 |
gaacctgagaaatccaaacaaggatttcaatttgggtcttgttcaacaagtgttggaattggagattcactcactcaagaaactagaagaattgatcgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12703261 |
gaacctgagaaatccaaacaaggatttcaatttgggtcttgttcaacaagtgttggaattggagattcactcactcaagaaactagaagaattgatcgtc |
12703162 |
T |
|
| Q |
101 |
cgctcacgaaagttgagacccccaatcagc---ttcatagaaattctgcttccaaagtttgcaaaccattgcagaatttggttcctgttgatgctttagc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
12703161 |
cgctcacgaaagttgagacccccaatcagcagcttcatagaaattctgcttccaaagtttgcaaaccattgcagaatttggttccagttgatgctctaga |
12703062 |
T |
|
| Q |
198 |
agcaaataaaacagttgatgatgaaagtcgatgcgtggaatcattgtacaaatccttacttcacattcagccgatagcatatgaactatttgatgcattg |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12703061 |
agcaaataaaacagttgatgatgaaagtcgatgcgtggaatcactgtacaaatccttacttcacattcagccgatagcatatgaactatttgatgcattg |
12702962 |
T |
|
| Q |
298 |
gatcaagattggttatttagttcagtgaagatagaagcaaagcatgtctccaagaaacagaagaccgatgcctttcggtgttcaaaatctctatggcctc |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12702961 |
gatcaagattggttatttagttcagtgaagatagaagcaaagcatgtctccaagaaacagaagaccgatgcctttcggtgttcaaaatctctatggcctc |
12702862 |
T |
|
| Q |
398 |
gggcgcaatttatgcctgaggttaacatacatgctttgccatacacaattccattttgattcttttggaatttttgtagacagtacagtagagttagctt |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12702861 |
gggcgcaatttatgcctgaggttaacatacttgctttgccatacacaattccattttgattcttttggaatttttgtagacagtacagtagagttagctt |
12702762 |
T |
|
| Q |
498 |
ttaaaaacatgtaccaacatttcattgtgcaagagaatgagatag-nnnnnnnngtcaacataatagatgatcgatgtaattgactaagataccacatac |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12702761 |
ttaaaaacatgtaccaacatttcattgtgcaagagaatgagatagtttttttttgtcaacataatagatgatcgatgtaattgactaagataccacatac |
12702662 |
T |
|
| Q |
597 |
cagacaccaacattggtattcaaggaatgta |
627 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
12702661 |
cagacaccaacattggtattcaaggaatgta |
12702631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 108 - 482
Target Start/End: Complemental strand, 8206942 - 8206564
Alignment:
| Q |
108 |
gaaagttgagacccccaatcagcttcatagaaattctgcttccaaagtttgcaaaccattgcagaatttggttcctgttgatgctttagcagca---aat |
204 |
Q |
| |
|
||||| ||||||||| | ||||| ||| | || |||||| |||||||||| |||||||||| |||| ||||||||||||||||| |||||||| ||| |
|
|
| T |
8206942 |
gaaagctgagaccccaagtcagcaccatgggaaatctgctcccaaagtttgtaaaccattgccgaatgtggttcctgttgatgctgtagcagcagcaaat |
8206843 |
T |
|
| Q |
205 |
aaaacagttgatgatgaaagtcgatgcgtggaatcattgtacaaatccttacttcacattcagccgatagcatatgaactatttgatgcattggatcaag |
304 |
Q |
| |
|
| || |||||||||||||||||| | |||| |||||||| ||||||||||||||||||||||||||| |||||||| || | | |||||||||||| |
|
|
| T |
8206842 |
gagactgttgatgatgaaagtcgaaggatggattcattgtataaatccttacttcacattcagccgataacatatgaa---ttgggtccattggatcaag |
8206746 |
T |
|
| Q |
305 |
attggttatttagttcagtgaagatagaagcaaagcatgtctccaagaaacagaagaccgatgcctttcggtgttcaaaatctctatgg---cctcgggc |
401 |
Q |
| |
|
||||||||||||| ||||| || |||| ||| | |||| |||||||||||||| |||||||||| ||| ||||||||| ||| | |||||||| |
|
|
| T |
8206745 |
attggttatttagctcagtaccgaaagaaacaatacccatctcgaagaaacagaagactgatgcctttcagtgctcaaaatctttattgcaacctcgggc |
8206646 |
T |
|
| Q |
402 |
gcaatttatgcctgaggttaacatacatgctttgccatacacaattccattttga-ttcttttggaatttttgtagacagta |
482 |
Q |
| |
|
|||| ||||||||||| | ||||| |||| || ||||||||| ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
8206645 |
tcaatatatgcctgaggctgacatatatgcattaccatacacagttccattttgattttttttggaatttttgtagacagta |
8206564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 8207148 - 8207045
Alignment:
| Q |
1 |
gaacctgagaaatccaaacaaggatttcaatttgggtcttgttcaacaagtgttggaattggagattcactcactcaagaaactagaagaattgatcgtc |
100 |
Q |
| |
|
||||||||| |||||||||||| || |||||| ||||||||||||| ||||||| || | | |||||| || ||| ||| ||||| ||||||||||||| |
|
|
| T |
8207148 |
gaacctgaggaatccaaacaagtatgtcaattggggtcttgttcaagaagtgttagagtagcagattcgcttcctcgagatactagcagaattgatcgtc |
8207049 |
T |
|
| Q |
101 |
cgct |
104 |
Q |
| |
|
|||| |
|
|
| T |
8207048 |
cgct |
8207045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University