View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20312_high_25 (Length: 285)
Name: NF20312_high_25
Description: NF20312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20312_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 7179810 - 7180067
Alignment:
| Q |
18 |
tgtacctggaggaaagagttcatggcatagctagtttcgtcaactcctttgttcatgtgaagtgtttccacagtttccattttcttttctttacagataa |
117 |
Q |
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| T |
7179810 |
tgtacctggaggaaagagttcatggcatagctagtttcgtcaactcctttgttcatgtgaagtgtttccacagtttccattttcttttctttacagataa |
7179909 |
T |
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| Q |
118 |
gaaggtgatgaatgtgcttttcaattaggtaaacttcttaagcaataaatacgtgtgtatctgagtagatagacttctttctcctactcttttgaatgct |
217 |
Q |
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| T |
7179910 |
gaaggtgatgaatgtgcttttcaattaggtaaacttcttaagcaataaatacgtgtgtatctgagtaggtagacttctttctcctactcttttgaatgct |
7180009 |
T |
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| Q |
218 |
agttggtctagcttcgctcctcaaaaggttcaagaaatctcttggcaattaatctgtg |
275 |
Q |
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| T |
7180010 |
agttggtctagcttcgctcctcaaaaggttcaagaaatctcttggcaattaatctgtg |
7180067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 7193176 - 7193312
Alignment:
| Q |
19 |
gtacctggaggaaagagttcatggcatagctagtttcgtcaactcctttgttcatgtgaagtgtttccacagtttccattttcttttctt----tacaga |
114 |
Q |
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| T |
7193176 |
gtacctggacgaaagagttcatggcatagctagtttcgccagctcctttattcatgtgaagtgtttctacagtttccattttcttttcttattggacaga |
7193275 |
T |
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| Q |
115 |
taagaaggtgatgaatgtgcttttcaattaggtaaac |
151 |
Q |
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| T |
7193276 |
tgagaaggtgatgaatgttcctttcaattagggaaac |
7193312 |
T |
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