View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20312_high_27 (Length: 259)
Name: NF20312_high_27
Description: NF20312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20312_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 21252611 - 21252391
Alignment:
| Q |
1 |
aaattaactacattttttcatatgaggatcgatagtaacacactctataatttgttgaaattcaaatggatcccggtaaattatctaggtccctcgtaaa |
100 |
Q |
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| T |
21252611 |
aaattaactgcattttttcatatgaggatcgatagtaacacactctataatttgttgaaattcaaatggatcccagtaaattatctaggcccctcgtaaa |
21252512 |
T |
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| Q |
101 |
tttagtgggacccatttaaaatcgaaccaattaaagtgaagtgagtgtgttggaaaaaatgtgttagagagtgtggttctagcataaccgtaaccgcgtc |
200 |
Q |
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| T |
21252511 |
tttagtggaacccatttaaaattgaaccaattaaa-----gtgagtgtgttggaaaaagtgtgttagagagtgtggttctagcataaccgtaaccgcgtc |
21252417 |
T |
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| Q |
201 |
ctcaattaacacttaagttaatactt |
226 |
Q |
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| T |
21252416 |
ctcaattaaaaattaagttaatactt |
21252391 |
T |
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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 47949120 - 47949027
Alignment:
| Q |
40 |
acactctataatttgttgaaattcaaatggatcccggtaaattatctaggtccctcgtaaatttagtgggacccatttaaaatcgaaccaatta |
133 |
Q |
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| T |
47949120 |
acactctctaattggttgaaattcaattggatcccacgaaatcatgtaggccccacataaatttagtgggacctatttaaaatcaaaccaatta |
47949027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 6103650 - 6103565
Alignment:
| Q |
48 |
taatttgttgaaattcaaatggatcccggtaaattatctaggtccctcgtaaatttagtgggacccatttaaaatcgaaccaatta |
133 |
Q |
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| T |
6103650 |
taattggttgaaattcaaatggatcccactaaatcatctaggccccatataaatttattggaacacatttaaaatcaaaccaatta |
6103565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 48093166 - 48093090
Alignment:
| Q |
40 |
acactctataatttgttgaaattcaaatggatcccggtaaattatctaggtccctcgtaaatttagtgggacccatt |
116 |
Q |
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| T |
48093166 |
acactctctaattggttgaaattcaaatgggtctccctaaatcatgtaggtcccacataaatttagtgggatccatt |
48093090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 9705294 - 9705428
Alignment:
| Q |
48 |
taatttgttgaaattcaaatggatcccggtaaattatctaggtccctcgtaaatttagtgggacccatttaaaatcgaaccaattaaagtgaagtgagtg |
147 |
Q |
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| T |
9705294 |
taattggttgaaattcaaatggatcccacaaaattatgtagaccccacatgaatttaatgggatccattgaatatcgaaccaatta-----gagagagtg |
9705388 |
T |
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| Q |
148 |
tgttggaaaaaatgtgttagagagtgtggttctagcataa |
187 |
Q |
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| T |
9705389 |
tgttggaaagagtgtcttagagagtgtattgctagcataa |
9705428 |
T |
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