View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20312_high_29 (Length: 257)

Name: NF20312_high_29
Description: NF20312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20312_high_29
NF20312_high_29
[»] chr5 (11 HSPs)
chr5 (17-240)||(39470796-39471019)
chr5 (17-231)||(39464573-39464787)
chr5 (19-205)||(39471978-39472164)
chr5 (21-182)||(39458337-39458498)
chr5 (43-238)||(39460161-39460354)
chr5 (52-200)||(39486406-39486554)
chr5 (68-182)||(39480338-39480452)
chr5 (43-198)||(39454588-39454743)
chr5 (19-205)||(39450942-39451128)
chr5 (19-200)||(39475453-39475634)
chr5 (73-182)||(43312608-43312717)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 39470796 - 39471019
Alignment:
Q  17 cagagatgggaatggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattag 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  39470796 cagagatgggaatggatttagcgtagacatcagattctgcagtgtgtgggaatttcatgactaagacagttattcagaggcggttatcatggttgattag 39470895  T
Q  117 aagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttggagcacaagacatacact 216  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39470896 aagcttggcgaactctaaggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactttcttcatgttggagcacaagacatacact 39470995  T
Q  217 tactcagtgtgagttactgtttct 240  Q
    ||||||||||||||||||||||||    
T  39470996 tactcagtgtgagttactgtttct 39471019  T

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Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 39464573 - 39464787
Alignment:
Q  17 cagagatgggaatggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattag 116  Q
    |||| |||||||||||||||| ||||||||| |||||||  || ||||||| ||| ||||| ||||  ||||||||||| ||||||||| ||||||||||    
T  39464573 cagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgatgactaagatggttattcggagacggttatcacggttgattag 39464672  T
Q  117 aagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttggagcacaagacatacact 216  Q
    |||||| || ||||| | |||||||||||||||||||||||||||||||||||||||||| |||||  || ||||||| ||| |||||| ||||| ||||    
T  39464673 aagcttcgcaaactcaagggcagaaactagatgacctacagcgggaaaagggataaacactacttctgctttcttcattttgaagcacaggacatgcact 39464772  T
Q  217 tactcagtgtgagtt 231  Q
    ||||| || ||||||    
T  39464773 tactcggtttgagtt 39464787  T

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Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 39472164 - 39471978
Alignment:
Q  19 gagatgggaatggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaa 118  Q
    ||||| |||| |||||||| ||||||||| | ||||||  ||||||||||||| || || || |||||||||||||| ||||||||| ||||||||||||    
T  39472164 gagataggaagggatttagtgtagacatcggtttctgtgatgtgtgggaatttgataactaaaacagttattcggagacggttatcacggttgattagaa 39472065  T
Q  119 gcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttggagcaca 205  Q
    |||| || ||||| |  |||||||||| ||||||  |||| |||||||||| ||||||||||||  || ||||||| ||||||||||    
T  39472064 gcttcgcaaactcgagagcagaaactatatgaccctcagccggaaaagggacaaacaccacttctgctttcttcatcttggagcaca 39471978  T

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Target: chr5; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 39458337 - 39458498
Alignment:
Q  21 gatgggaatggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaagc 120  Q
    ||||| || |||||||| |||||||||   |||||| |||||||| |||||||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  39458337 gatggcaagggatttagtgtagacatctatttctgttgtgtgtggaaatttcatgaccaagatagttattcggagacggttatcacggttgattagaagc 39458436  T
Q  121 ttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttc 182  Q
    || || || || | ||  |||||||||||||| ||| | ||  ||| ||||| |||||||||    
T  39458437 tttgcaaattcgagggtggaaactagatgaccaacaccaggtgaagagataatcaccacttc 39458498  T

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Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 43 - 238
Target Start/End: Complemental strand, 39460354 - 39460161
Alignment:
Q  43 acatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaa 142  Q
    ||||| |||||||  |||| ||||| ||||||||| | |||||| ||||||||||| |||||| ||||| |||||||||| |||||||| | ||  |||     
T  39460354 acatcggattctgatgtgtatgggagtttcatgactaggacagtaattcggaggcgcttatcacggttggttagaagctttgcgaactcaagggtggaat 39460255  T
Q  143 ctagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttggagcacaagacatacacttactcagtgtgagttactgttt 238  Q
    ||||||| |    | ||||||||||||||||||| |||||  || ||||||| |||||||||| || |||| |||||||  ||| |||||||||||    
T  39460254 ctagatggctcggaccgggaaaagggataaacacaacttctgctttcttcatcttggagcacaggatatacccttactc--tgtaagttactgttt 39460161  T

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Target: chr5; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 52 - 200
Target Start/End: Complemental strand, 39486554 - 39486406
Alignment:
Q  52 tctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgac 151  Q
    ||||| |||||||||||||| ||||||||||  ||||||||||| ||||||||| |||||||||||||||| || || || | ||  |||||||||||||    
T  39486554 tctgtggtgtgtgggaatttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgac 39486455  T
Q  152 ctacagcgggaaaagggataaacaccacttccactgtcttcatgttgga 200  Q
    | ||| | ||  ||||||||| |||||||||  || ||||||| |||||    
T  39486454 caacaccaggtgaagggataatcaccacttctgctttcttcatcttgga 39486406  T

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Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 182
Target Start/End: Complemental strand, 39480452 - 39480338
Alignment:
Q  68 atttcatgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagg 167  Q
    ||||||||||||| |||||||||||||| ||||||||| |||||||||||||||| ||||| || | ||  |||||||||||||| ||| | ||  ||||    
T  39480452 atttcatgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagg 39480353  T
Q  168 gataaacaccacttc 182  Q
    ||||| |||||||||    
T  39480352 gataatcaccacttc 39480338  T

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Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 198
Target Start/End: Complemental strand, 39454743 - 39454588
Alignment:
Q  43 acatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaa 142  Q
    ||||||| ||| || | |||||| ||||| | ||| || |||||||||||||| ||||||||| ||||||||||||| || |||||||| | ||  ||||    
T  39454743 acatcagtttcagtggcgtgtggaaatttgaggactaaaacagttattcggagacggttatcacggttgattagaagtttcgcgaactcaagggtggaaa 39454644  T
Q  143 ctagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttg 198  Q
    ||| ||| || ||| | ||| |||||||||||||||||||  || |||||||||||    
T  39454643 ctaaatggccaacaccaggagaagggataaacaccacttctgctttcttcatgttg 39454588  T

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Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 39451128 - 39450942
Alignment:
Q  19 gagatgggaatggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaa 118  Q
    ||||| |||| |||||||| || |||||||  |||||   | ||||||||||| || || || ||||||| |||||| ||||||||| | ||||||||||    
T  39451128 gagataggaagggatttagtgttgacatcattttctgatatatgtgggaatttgataactaaaacagttactcggagacggttatcacgattgattagaa 39451029  T
Q  119 gcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttggagcaca 205  Q
    |||| ||||| || | ||  ||||||||||| |  ||| | |||||||||||||||||||||||  || ||||||| ||| ||||||    
T  39451028 gcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacaccacttctgctttcttcatcttgaagcaca 39450942  T

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Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 39475634 - 39475453
Alignment:
Q  19 gagatgggaatggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaa 118  Q
    ||||| |||| |||||||| || |||||||  ||||||  ||||||||||||| || || || ||||||| |||||| ||||||||| | ||||||||||    
T  39475634 gagataggaagggatttagtgttgacatcattttctgttatgtgtgggaatttgataactaaaacagttactcggagacggttatcacgattgattagaa 39475535  T
Q  119 gcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttgga 200  Q
    ||||  | ||||| |  |  |||| |||||| |  | | |||||||||||||||||||||||||  || ||||||| |||||    
T  39475534 gcttcacaaactcaagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctgctttcttcatcttgga 39475453  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 43312608 - 43312717
Alignment:
Q  73 atgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataa 172  Q
    ||||||||||| ||||  ||||| ||||||||| ||||||| |||||||| || ||||| | ||  || |||| ||| || ||| | ||| |||||||||    
T  43312608 atgaccaagacggttacacggagacggttatcacggttgatgagaagcttagcaaactcaagggtggatactaaatgtcccacacctggagaagggataa 43312707  T
Q  173 acaccacttc 182  Q
    ||||||||||    
T  43312708 acaccacttc 43312717  T

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