View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20312_high_31 (Length: 250)

Name: NF20312_high_31
Description: NF20312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20312_high_31
NF20312_high_31
[»] chr5 (12 HSPs)
chr5 (18-250)||(39470579-39470811)
chr5 (18-246)||(39486584-39486818)
chr5 (113-250)||(39464451-39464588)
chr5 (36-163)||(39475711-39475841)
chr5 (36-166)||(39483459-39483592)
chr5 (27-163)||(39451205-39451344)
chr5 (33-160)||(39472241-39472368)
chr5 (27-159)||(39460456-39460591)
chr5 (18-75)||(39464377-39464434)
chr5 (20-164)||(39454840-39454984)
chr5 (27-161)||(39458125-39458259)
chr5 (190-238)||(39460377-39460425)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 39470579 - 39470811
Alignment:
Q  18 gcagggagggaaaattctttggcaacatcaatcatgtttgtgcagaacatgtcaacaatgacagcggcgaggggtccatgttgttctccagtagtgaggt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39470579 gcagggagggaaaattctttggcaacatcaatcatgtttgtgcagaacatgtcaacaatgacagcggcgaggggtccatgttgttctccagtagtgaggt 39470678  T
Q  118 tggagatagcttgtttgacgtttgctttatgagcttcgaggagagcgttcatatccgaacctggaccagaggttgggagaacagaaacttctggaaggtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39470679 tggagatagcttgtttgacgtttgctttatgagcttcgaggagagcgttcatatccgaacctggatcagaggttgggagaacagaaacttctggaaggtt 39470778  T
Q  218 gatgacatggagagaatcagagatgggaatgga 250  Q
    |||||||||||||||||||||||||||||||||    
T  39470779 gatgacatggagagaatcagagatgggaatgga 39470811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 39486818 - 39486584
Alignment:
Q  18 gcagggagggaaaattctttggcaacatcaatcatgtttgtgcagaacatgtcaacaatgacagcggcgaggggtccatgttgttctcc------agtag 111  Q
    ||||||| ||||||||||||||||| |||||||||| | ||||||||||||||||||| ||  ||||| ||| ||||| || ||| |||      |||||    
T  39486818 gcagggatggaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgaaggcggcaaggtgtccaggtggttgtccttctctagtag 39486719  T
Q  112 tgaggttggagatagcttgtttgacgtttgctttatgagcttcgaggagagcgttcatatccgaacctggaccagaggttgggagaacagaaacttctgg 211  Q
    |||||||||| | ||||||||||||||||| ||| |||||||| ||||||||||||||  |  ||| |||  | | | ||||| ||| ||||  ||||||    
T  39486718 tgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgacaaaacgtggttcggtgtttgggggaagagaacattctgg 39486619  T
Q  212 aaggttgatgacatggagagaatcagagatgggaa 246  Q
    |||||||||||| ||||||||||| || |||||||    
T  39486618 aaggttgatgacctggagagaatcggaaatgggaa 39486584  T

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Target: chr5; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 113 - 250
Target Start/End: Original strand, 39464451 - 39464588
Alignment:
Q  113 gaggttggagatagcttgtttgacgtttgctttatgagcttcgaggagagcgttcatatccgaacctggaccagaggttgggagaacagaaacttctgga 212  Q
    |||||| ||||  |||||||||||||||| ||| ||||| || ||||||||||||||| | ||||||||| |||||||| || ||| |||||||||||||    
T  39464451 gaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcatagcggaacctggatcagaggtttggggaagagaaacttctgga 39464550  T
Q  213 aggttgatgacatggagagaatcagagatgggaatgga 250  Q
    |||||||||||||  ||||||||||| |||||||||||    
T  39464551 aggttgatgacattaagagaatcagatatgggaatgga 39464588  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 163
Target Start/End: Complemental strand, 39475841 - 39475711
Alignment:
Q  36 ttggcaacatcaatcatgtttgtgcagaacatgtcaacaatgacagcggcgaggggtccatgttgt---tctccagtagtgaggttggagatagcttgtt 132  Q
    ||||||||||  |||||| | ||||||||||||||||||| ||  ||||||||| |||||||||||   |||| ||||||||||||||||| ||||||||    
T  39475841 ttggcaacattgatcatggtggtgcagaacatgtcaacaacgaaggcggcgaggtgtccatgttgtccttctctagtagtgaggttggagacagcttgtt 39475742  T
Q  133 tgacgtttgctttatgagcttcgaggagagc 163  Q
    | ||||||| ||| |||||||||||||||||    
T  39475741 ttacgtttggtttctgagcttcgaggagagc 39475711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 166
Target Start/End: Complemental strand, 39483592 - 39483459
Alignment:
Q  36 ttggcaacatcaatcatgtttgtgcagaacatgtcaacaatgacagcggcgaggggtccatgttg---ttctccagtagtgaggttggagatagcttgtt 132  Q
    |||||||||||||||||| | ||||||||||||||||||| ||  |||| |||| ||||||||||   ||||| ||||||||||||||||| |||||||     
T  39483592 ttggcaacatcaatcatggtggtgcagaacatgtcaacaacgaaggcggagaggtgtccatgttgtccttctctagtagtgaggttggagacagcttgta 39483493  T
Q  133 tgacgtttgctttatgagcttcgaggagagcgtt 166  Q
    | | ||||| ||| |||||||| |||||||||||    
T  39483492 ttatgtttggtttctgagcttcaaggagagcgtt 39483459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 39451344 - 39451205
Alignment:
Q  27 gaaaattctttggcaacatcaatcatgtttgtgcagaacatgtcaacaatgacagcggcgaggggtccatgtt---gttctccagtagtgaggttggaga 123  Q
    |||||||||||||||| |||||||||| | ||||||||||||||||||| ||  | |||||||  ||||| ||    | |||||||||||||||| || |    
T  39451344 gaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtggcgaggactccattttctcctcctccagtagtgaggttagaaa 39451245  T
Q  124 tagcttgtttgacgtttgctttatgagcttcgaggagagc 163  Q
      ||||||||||| |||| ||| |||||||||||||||||    
T  39451244 cggcttgtttgacatttggtttctgagcttcgaggagagc 39451205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 39472368 - 39472241
Alignment:
Q  33 tctttggcaacatcaatcatgtttgtgcagaacatgtcaacaatgacagcggcgaggggtccatgttgttctccagtagtgaggttggagatagcttgtt 132  Q
    |||||||||||||||||||||||||||||||||||||||||||  | |||||| |||  ||||| || |  ||  ||| ||||||| || |   ||||||    
T  39472368 tctttggcaacatcaatcatgtttgtgcagaacatgtcaacaacaaaagcggcaaggactccattttctgatctggtaatgaggttagatactacttgtt 39472269  T
Q  133 tgacgtttgctttatgagcttcgaggag 160  Q
    ||||||||| ||| ||||||||||||||    
T  39472268 tgacgtttggtttctgagcttcgaggag 39472241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 159
Target Start/End: Complemental strand, 39460591 - 39460456
Alignment:
Q  27 gaaaattctttggcaacatcaatcatgtttgtgcagaacatgtcaacaatgacagcggcgaggggtccatgttgttctc---cagtagtgaggttggaga 123  Q
    |||||||||||||||| ||||||||| || |||||||||||||||||||  |  || | ||||| |||||||| |||||    ||||||||| || || |    
T  39460591 gaaaattctttggcaatatcaatcattttagtgcagaacatgtcaacaacaaaggctgtgagggttccatgtttttctctagtagtagtgagattagata 39460492  T
Q  124 tagcttgtttgacgtttgctttatgagcttcgagga 159  Q
      |||||||||||||||| ||| |||||||||||||    
T  39460491 cggcttgtttgacgtttgatttctgagcttcgagga 39460456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 39464377 - 39464434
Alignment:
Q  18 gcagggagggaaaattctttggcaacatcaatcatgtttgtgcagaacatgtcaacaa 75  Q
    ||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  39464377 gcagggacggaaaattccttggcaacatcaatcatgttggtgcagaacatgtcaacaa 39464434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 39454984 - 39454840
Alignment:
Q  20 agggagggaaaattctttggcaacatcaatcatgtttgtgcagaacatgtcaacaatgacagcggcgaggggtccatgttgttctccagtagtgaggttg 119  Q
    ||||| ||| || |||||||||||||||||||||  ||||||| |||||||||||| || ||| ||||||  ||||  |  ||| |||||| |||||||     
T  39454984 agggatggagaactctttggcaacatcaatcatggctgtgcaggacatgtcaacaacgaaagctgcgaggactccacttgcttcaccagtaatgaggtta 39454885  T
Q  120 gagatagcttgtttgacgtttgctttatgagcttcgaggagagcg 164  Q
    || |  |||||||||||||||| ||| |||||||| ||| |||||    
T  39454884 gatacggcttgtttgacgtttggtttctgagcttcaaggtgagcg 39454840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 39458125 - 39458259
Alignment:
Q  27 gaaaattctttggcaacatcaatcatgtttgtgcagaacatgtcaacaatgacagcggcgaggggtccatgttgttctccagtagtgaggttggagatag 126  Q
    |||||||||||  |||||||||||||| | ||||||||||||||||||||||  || || |||  ||||| || |  | |  |||||||||||||||  |    
T  39458125 gaaaattcttttacaacatcaatcatggtggtgcagaacatgtcaacaatgaatgcagctaggactccattttctggtgctttagtgaggttggagacgg 39458224  T
Q  127 cttgtttgacgtttgctttatgagcttcgaggaga 161  Q
    ||| ||||||||||| ||| ||||||| |||||||    
T  39458225 cttttttgacgtttggtttctgagctttgaggaga 39458259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 39460425 - 39460377
Alignment:
Q  190 ttgggagaacagaaacttctggaaggttgatgacatggagagaatcaga 238  Q
    ||||| ||| |||||||||||||||||||||||  | ||||||||||||    
T  39460425 ttgggggaagagaaacttctggaaggttgatgatgtcgagagaatcaga 39460377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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