View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20312_high_9 (Length: 425)
Name: NF20312_high_9
Description: NF20312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20312_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 13 - 409
Target Start/End: Complemental strand, 15589691 - 15589297
Alignment:
| Q |
13 |
aatatatattattacaaacttgagagatcaaatgaaggttaagaatgcaatttatccaagaggtgttaatgataaaagtttgactaatacaacttcaaag |
112 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15589691 |
aatatatattattacaaacttgggagatcaaatgaaggttaagaatgcaatttatccaagaggtgttaatgataaaagtttgactaatacaacttcaaag |
15589592 |
T |
|
| Q |
113 |
gacaaagttgaaatatcatctgaaacagttgtaaaatttactgttttttattatgatttttccttccaaatttaaacgaagaagaataagggtaacagtg |
212 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15589591 |
gaaaaagttgaaatatcatctgaaacagttgtaaaatttactgttttttattatgatttttcctgccaaatttaaaggaagaagaataagggtaacagtg |
15589492 |
T |
|
| Q |
213 |
ctatttgactcagcttaaggcattcaaaactccattacacccagttttgtgttgtctctaaaatgtttaaatttaccatgaattgcatggtacattactt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15589491 |
ctatttgactcagcttaaggcattcaaaactccattacacccagttttgtgttgtctctaaaatgtttaaatttaccatgaattgcatggtacattactt |
15589392 |
T |
|
| Q |
313 |
gtataatgcagccaccataacaaagtttataaattagtccatgaacaatatatttgtattaccatacaaaaatgagtccaattaaaaataatgatat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
15589391 |
gtataatgcagccaccataacaaagtttataaatacgtccatgaaca--atatttgtattatcatagaaaaatgagtccaattaaaaataatgatat |
15589297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 348
Target Start/End: Complemental strand, 15584241 - 15584178
Alignment:
| Q |
285 |
ttaccatgaattgcatggtacattacttgtataatgcagccaccataacaaagtttataaatta |
348 |
Q |
| |
|
|||||||||||| |||||| |||||||||| |||| |||||| ||| |||| |||| ||||||| |
|
|
| T |
15584241 |
ttaccatgaattacatggtgcattacttgtctaattcagccagcatcacaaggtttctaaatta |
15584178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 409
Target Start/End: Original strand, 18471956 - 18472003
Alignment:
| Q |
362 |
atatttgtattaccatacaaaaatgagtccaattaaaaataatgatat |
409 |
Q |
| |
|
||||||| |||| ||||||||||||||| |||||| |||||||||||| |
|
|
| T |
18471956 |
atatttgaattaacatacaaaaatgagtacaattagaaataatgatat |
18472003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 409
Target Start/End: Original strand, 18477582 - 18477629
Alignment:
| Q |
362 |
atatttgtattaccatacaaaaatgagtccaattaaaaataatgatat |
409 |
Q |
| |
|
||||||| |||| ||||||||||||||| |||||| |||||||||||| |
|
|
| T |
18477582 |
atatttgaattaacatacaaaaatgagtacaattagaaataatgatat |
18477629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University