View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20312_low_12 (Length: 410)

Name: NF20312_low_12
Description: NF20312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20312_low_12
NF20312_low_12
[»] chr8 (39 HSPs)
chr8 (205-403)||(29023108-29023308)
chr8 (295-390)||(44926802-44926897)
chr8 (295-398)||(33627079-33627182)
chr8 (300-399)||(42148971-42149070)
chr8 (309-390)||(25698012-25698093)
chr8 (310-400)||(3097249-3097339)
chr8 (310-399)||(28425516-28425605)
chr8 (6-71)||(29022913-29022978)
chr8 (302-399)||(41289102-41289199)
chr8 (295-399)||(4941825-4941929)
chr8 (307-399)||(6399152-6399244)
chr8 (310-390)||(36114093-36114173)
chr8 (307-399)||(43550864-43550956)
chr8 (310-381)||(27649722-27649793)
chr8 (308-390)||(8124945-8125027)
chr8 (310-357)||(38152260-38152307)
chr8 (313-399)||(3467512-3467598)
chr8 (307-357)||(40742379-40742429)
chr8 (307-396)||(26125545-26125634)
chr8 (295-399)||(40742085-40742189)
chr8 (313-357)||(41981136-41981180)
chr8 (300-399)||(440233-440332)
chr8 (300-399)||(22936837-22936936)
chr8 (320-390)||(24897640-24897710)
chr8 (308-346)||(26243065-26243103)
chr8 (310-400)||(34342896-34342985)
chr8 (321-399)||(42143408-42143486)
chr8 (306-347)||(3619164-3619205)
chr8 (306-343)||(37458403-37458440)
chr8 (313-347)||(24297687-24297721)
chr8 (306-348)||(26575807-26575849)
chr8 (313-347)||(41408169-41408203)
chr8 (306-347)||(2026093-2026134)
chr8 (306-347)||(17073707-17073748)
chr8 (306-347)||(17574522-17574563)
chr8 (306-347)||(35801788-35801829)
chr8 (312-396)||(11126494-11126578)
chr8 (307-347)||(41891915-41891955)
chr8 (295-371)||(45147322-45147398)
[»] chr5 (41 HSPs)
chr5 (205-403)||(41740630-41740829)
chr5 (295-390)||(32454504-32454599)
chr5 (295-399)||(40885177-40885282)
chr5 (295-397)||(40495401-40495502)
chr5 (295-399)||(3667821-3667925)
chr5 (300-399)||(22482161-22482260)
chr5 (310-390)||(13253132-13253212)
chr5 (295-399)||(35760156-35760260)
chr5 (319-399)||(39988008-39988088)
chr5 (313-399)||(7385973-7386059)
chr5 (313-397)||(8049094-8049178)
chr5 (295-391)||(16158514-16158610)
chr5 (6-66)||(41740967-41741027)
chr5 (311-390)||(2430346-2430425)
chr5 (307-399)||(41834871-41834963)
chr5 (307-357)||(3060306-3060355)
chr5 (310-400)||(10058056-10058146)
chr5 (307-353)||(16843517-16843563)
chr5 (300-357)||(7714912-7714969)
chr5 (307-355)||(33953986-33954034)
chr5 (307-397)||(9275527-9275617)
chr5 (330-396)||(28869547-28869613)
chr5 (300-390)||(40791119-40791209)
chr5 (300-390)||(42146280-42146370)
chr5 (302-347)||(3747683-3747728)
chr5 (300-357)||(24045803-24045860)
chr5 (300-352)||(27021100-27021153)
chr5 (310-351)||(32030698-32030739)
chr5 (306-347)||(40979996-40980037)
chr5 (307-399)||(4292128-4292220)
chr5 (306-348)||(33082423-33082465)
chr5 (314-399)||(5710427-5710511)
chr5 (306-347)||(7071503-7071544)
chr5 (306-347)||(8957979-8958020)
chr5 (306-347)||(11017912-11017953)
chr5 (306-347)||(20069163-20069204)
chr5 (306-347)||(27738036-27738077)
chr5 (306-347)||(31906018-31906059)
chr5 (306-347)||(33386955-33386996)
chr5 (306-350)||(25256313-25256357)
chr5 (306-350)||(25320102-25320146)
[»] chr2 (38 HSPs)
chr2 (205-403)||(23358127-23358328)
chr2 (295-390)||(7472724-7472819)
chr2 (287-398)||(44619104-44619215)
chr2 (287-399)||(2215208-2215318)
chr2 (294-399)||(9988543-9988648)
chr2 (289-399)||(28127329-28127439)
chr2 (6-71)||(23357928-23357993)
chr2 (295-399)||(2213468-2213572)
chr2 (295-399)||(25940283-25940387)
chr2 (310-390)||(39141520-39141600)
chr2 (307-390)||(5916292-5916375)
chr2 (307-390)||(36312251-36312334)
chr2 (300-357)||(8170280-8170337)
chr2 (300-399)||(7296122-7296221)
chr2 (307-390)||(14821137-14821220)
chr2 (314-399)||(1945081-1945166)
chr2 (300-355)||(7295432-7295487)
chr2 (300-399)||(28261261-28261360)
chr2 (307-378)||(31562747-31562818)
chr2 (306-353)||(42516063-42516110)
chr2 (308-349)||(18511077-18511118)
chr2 (300-357)||(36548167-36548224)
chr2 (308-370)||(32501961-32502023)
chr2 (294-399)||(26207971-26208076)
chr2 (307-347)||(3853874-3853914)
chr2 (306-357)||(2234900-2234950)
chr2 (309-348)||(15283350-15283389)
chr2 (306-345)||(37640236-37640275)
chr2 (334-381)||(42089592-42089639)
chr2 (313-399)||(27911386-27911472)
chr2 (306-347)||(7474113-7474154)
chr2 (306-347)||(17481374-17481415)
chr2 (307-399)||(28641616-28641708)
chr2 (306-347)||(43341747-43341788)
chr2 (312-397)||(43436325-43436410)
chr2 (306-347)||(43695614-43695655)
chr2 (313-357)||(16467066-16467110)
chr2 (295-347)||(25747975-25748027)
[»] chr1 (37 HSPs)
chr1 (205-403)||(291758-291949)
chr1 (295-397)||(12468190-12468291)
chr1 (307-399)||(42850264-42850356)
chr1 (295-390)||(43728931-43729026)
chr1 (310-390)||(12247412-12247492)
chr1 (300-399)||(35569247-35569346)
chr1 (294-399)||(31223350-31223455)
chr1 (310-399)||(35536064-35536152)
chr1 (300-399)||(20800322-20800421)
chr1 (307-357)||(6464597-6464647)
chr1 (307-357)||(45710038-45710088)
chr1 (294-399)||(48510884-48510989)
chr1 (306-357)||(10470578-10470629)
chr1 (308-390)||(6166100-6166182)
chr1 (307-357)||(31933716-31933766)
chr1 (310-399)||(1199819-1199908)
chr1 (307-400)||(36205180-36205273)
chr1 (310-399)||(40229515-40229604)
chr1 (307-399)||(4369847-4369939)
chr1 (308-399)||(13055988-13056078)
chr1 (309-352)||(13931614-13931657)
chr1 (6-64)||(292096-292154)
chr1 (309-370)||(5410631-5410692)
chr1 (307-399)||(7826399-7826491)
chr1 (295-399)||(47123363-47123467)
chr1 (307-399)||(50977385-50977476)
chr1 (311-390)||(25230000-25230079)
chr1 (308-370)||(11023403-11023465)
chr1 (312-397)||(26058235-26058320)
chr1 (306-347)||(46033210-46033251)
chr1 (307-347)||(11051407-11051447)
chr1 (308-347)||(15884216-15884255)
chr1 (313-350)||(36118120-36118157)
chr1 (306-347)||(41512729-41512770)
chr1 (306-347)||(42137170-42137211)
chr1 (333-397)||(27801699-27801763)
chr1 (307-351)||(40821814-40821858)
[»] chr7 (37 HSPs)
chr7 (295-390)||(9456079-9456174)
chr7 (295-400)||(43737969-43738074)
chr7 (307-390)||(48134566-48134649)
chr7 (294-399)||(37562543-37562648)
chr7 (307-399)||(3622491-3622583)
chr7 (300-357)||(47301630-47301687)
chr7 (310-390)||(34010329-34010409)
chr7 (309-400)||(3342778-3342869)
chr7 (310-399)||(34366013-34366101)
chr7 (310-399)||(39391168-39391257)
chr7 (300-399)||(47217572-47217671)
chr7 (310-399)||(19095926-19096013)
chr7 (307-399)||(38230054-38230146)
chr7 (311-399)||(44967430-44967518)
chr7 (307-370)||(12632143-12632206)
chr7 (307-399)||(3375476-3375568)
chr7 (313-357)||(3750678-3750722)
chr7 (307-399)||(32205913-32206003)
chr7 (307-399)||(37639416-37639508)
chr7 (308-351)||(10372037-10372080)
chr7 (313-399)||(48459702-48459788)
chr7 (306-347)||(4035919-4035960)
chr7 (312-397)||(32186931-32187016)
chr7 (310-370)||(34011021-34011082)
chr7 (306-347)||(40903250-40903291)
chr7 (312-397)||(41715648-41715733)
chr7 (319-399)||(42904551-42904631)
chr7 (307-399)||(47021905-47021997)
chr7 (295-346)||(37886854-37886905)
chr7 (313-352)||(39977544-39977583)
chr7 (313-350)||(386560-386597)
chr7 (306-347)||(26826952-26826993)
chr7 (306-347)||(41065340-41065381)
chr7 (297-354)||(43631771-43631828)
chr7 (294-368)||(12964412-12964483)
chr7 (313-397)||(42740384-42740468)
chr7 (295-347)||(42752274-42752326)
[»] chr6 (13 HSPs)
chr6 (295-390)||(13739159-13739254)
chr6 (295-390)||(13744659-13744754)
chr6 (295-399)||(29409295-29409399)
chr6 (310-390)||(31132432-31132512)
chr6 (294-399)||(16442394-16442499)
chr6 (307-399)||(16548104-16548196)
chr6 (307-400)||(33899048-33899141)
chr6 (307-390)||(6208115-6208198)
chr6 (313-399)||(10826062-10826148)
chr6 (307-351)||(17830090-17830134)
chr6 (302-398)||(699518-699613)
chr6 (306-347)||(31745486-31745527)
chr6 (307-347)||(2935695-2935735)
[»] chr4 (51 HSPs)
chr4 (295-390)||(43781571-43781666)
chr4 (294-399)||(51922877-51922982)
chr4 (294-399)||(13183094-13183199)
chr4 (300-390)||(30842075-30842165)
chr4 (300-390)||(48407750-48407840)
chr4 (294-399)||(26651892-26651997)
chr4 (295-399)||(29149351-29149455)
chr4 (295-399)||(49136460-49136564)
chr4 (299-357)||(9893653-9893711)
chr4 (294-399)||(48550471-48550576)
chr4 (295-399)||(15603298-15603402)
chr4 (307-399)||(16566255-16566347)
chr4 (307-399)||(39636735-39636827)
chr4 (314-399)||(6138664-6138749)
chr4 (307-355)||(14072453-14072501)
chr4 (295-399)||(19592275-19592379)
chr4 (307-399)||(46830113-46830205)
chr4 (300-399)||(2175191-2175290)
chr4 (300-399)||(6505144-6505243)
chr4 (300-357)||(9889420-9889477)
chr4 (308-357)||(28986972-28987021)
chr4 (307-356)||(32238145-32238194)
chr4 (294-399)||(42944942-42945047)
chr4 (295-400)||(56241878-56241983)
chr4 (300-400)||(14564189-14564289)
chr4 (305-397)||(38693996-38694088)
chr4 (307-355)||(54152995-54153043)
chr4 (313-391)||(43772175-43772253)
chr4 (307-397)||(54735696-54735786)
chr4 (6-71)||(28987668-28987733)
chr4 (310-399)||(48908228-48908315)
chr4 (307-399)||(4954095-4954187)
chr4 (300-390)||(26426167-26426257)
chr4 (307-397)||(30887199-30887289)
chr4 (306-347)||(45106357-45106398)
chr4 (307-352)||(54655200-54655245)
chr4 (307-399)||(14054801-14054893)
chr4 (295-399)||(54150464-54150568)
chr4 (309-357)||(55638873-55638921)
chr4 (312-347)||(5025484-5025519)
chr4 (308-399)||(13167476-13167567)
chr4 (307-370)||(31520443-31520506)
chr4 (313-391)||(49519686-49519764)
chr4 (306-347)||(16202614-16202655)
chr4 (306-347)||(22605838-22605879)
chr4 (306-347)||(28963339-28963380)
chr4 (306-347)||(30417876-30417917)
chr4 (306-347)||(39733396-39733437)
chr4 (312-397)||(48550172-48550257)
chr4 (310-347)||(50523350-50523387)
chr4 (307-351)||(15619567-15619610)
[»] scaffold0369 (1 HSPs)
scaffold0369 (295-399)||(8402-8506)
[»] chr3 (44 HSPs)
chr3 (295-397)||(53179802-53179903)
chr3 (307-397)||(3348208-3348298)
chr3 (294-400)||(10334090-10334196)
chr3 (300-390)||(42318288-42318378)
chr3 (300-390)||(38125494-38125584)
chr3 (307-399)||(20813111-20813203)
chr3 (296-399)||(31618931-31619034)
chr3 (307-397)||(10853313-10853403)
chr3 (294-399)||(38172351-38172456)
chr3 (307-400)||(44224727-44224820)
chr3 (295-399)||(26519617-26519721)
chr3 (294-353)||(16246184-16246243)
chr3 (300-357)||(48189527-48189584)
chr3 (308-399)||(15511420-15511510)
chr3 (300-351)||(23496282-23496333)
chr3 (307-357)||(35425299-35425349)
chr3 (308-390)||(53074869-53074951)
chr3 (310-399)||(23207112-23207199)
chr3 (307-400)||(35930703-35930796)
chr3 (311-390)||(8424782-8424861)
chr3 (307-357)||(30811617-30811667)
chr3 (309-399)||(31084175-31084264)
chr3 (307-357)||(44939500-44939550)
chr3 (307-399)||(38340771-38340862)
chr3 (295-347)||(50664712-50664764)
chr3 (307-399)||(52966853-52966945)
chr3 (307-370)||(22736946-22737009)
chr3 (295-385)||(21224943-21225033)
chr3 (306-347)||(30811288-30811329)
chr3 (315-352)||(55087593-55087630)
chr3 (310-397)||(32357479-32357566)
chr3 (307-357)||(14959684-14959734)
chr3 (306-348)||(33329436-33329478)
chr3 (295-397)||(37117556-37117658)
chr3 (313-347)||(37698485-37698519)
chr3 (306-348)||(44610311-44610352)
chr3 (306-347)||(11264277-11264318)
chr3 (306-347)||(28884258-28884299)
chr3 (306-347)||(39252061-39252102)
chr3 (306-347)||(42074914-42074955)
chr3 (306-347)||(45423864-45423905)
chr3 (306-347)||(48253974-48254015)
chr3 (306-347)||(51230284-51230325)
chr3 (307-347)||(53078323-53078363)
[»] scaffold0983 (1 HSPs)
scaffold0983 (312-399)||(2312-2399)
[»] scaffold0007 (1 HSPs)
scaffold0007 (307-390)||(29175-29258)
[»] scaffold0381 (1 HSPs)
scaffold0381 (300-357)||(9069-9126)
[»] scaffold0005 (1 HSPs)
scaffold0005 (300-400)||(253086-253186)
[»] scaffold0217 (1 HSPs)
scaffold0217 (309-400)||(2070-2161)
[»] scaffold0041 (1 HSPs)
scaffold0041 (306-347)||(46727-46768)
[»] scaffold0394 (1 HSPs)
scaffold0394 (307-351)||(5918-5967)
[»] scaffold0184 (1 HSPs)
scaffold0184 (306-347)||(9254-9295)
[»] scaffold0097 (1 HSPs)
scaffold0097 (306-347)||(32541-32582)
[»] scaffold0003 (1 HSPs)
scaffold0003 (306-347)||(301745-301786)


Alignment Details
Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 205 - 403
Target Start/End: Original strand, 29023108 - 29023308
Alignment:
Q  205 atcactacacattaaaaaatacagctttggcaaatgtgatataattgnnnnnnnnnn--gacaaaatataagaaattctatatttaggggcgtttgatca 302  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||| ||||| |||    
T  29023108 atcactacacgttaaaaaatacagctttggcaaatgtgatataattgttttttttttttgacaaaatataagaaattctatttttaggggtgtttggtca 29023207  T
Q  303 ttttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcatct 402  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||    
T  29023208 ttttacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataacaatcaattttaaacaagtgtatccaaatataaaccaattcatct 29023307  T
Q  403 c 403  Q
    |    
T  29023308 c 29023308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 295 - 390
Target Start/End: Original strand, 44926802 - 44926897
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||| |||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||| ||||    
T  44926802 tttggtcattttacattcaaaattaattttgattcaaactatccaaataacatcaactcataagaatcacttttaaacaagtgtatccaaacataa 44926897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 295 - 398
Target Start/End: Complemental strand, 33627182 - 33627079
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    |||||| ||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| ||  |||||||   ||||||||||||| ||||| ||    
T  33627182 tttgataattttacattcaaaatcgattttgattcaaactatccaaacaacattaactcataagaatcacttttagtaaagtgtatccaaacataaatca 33627083  T
Q  395 attc 398  Q
    ||||    
T  33627082 attc 33627079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 300 - 399
Target Start/End: Original strand, 42148971 - 42149070
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||  ||  ||||||||| |||| |||||||| ||||| |||||||    
T  42148971 tcattttacattcaaaatcaattttgattcaaattatctaaacaacatcaactcatacgaatcacttttaaataagtctatccaaacataaatcaattca 42149070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 309 - 390
Target Start/End: Complemental strand, 25698093 - 25698012
Alignment:
Q  309 attcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||  ||||||||| |||| |||||||| ||||    
T  25698093 attcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaataagtttatccaaacataa 25698012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 310 - 400
Target Start/End: Complemental strand, 3097339 - 3097249
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcat 400  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||  ||||||||   ||| |||||||| ||||| ||||||||    
T  3097339 ttcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaagtgagtatatccaaacataaatcaattcat 3097249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 399
Target Start/End: Complemental strand, 28425605 - 28425516
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||| ||  |||| |||  ||||||||||||| ||||| |||||||    
T  28425605 ttcaaaatcaattttgattcaaactatccaaacaacgtcaactcataagaatcacttgtaagaaagtgtatccaaacataaatcaattca 28425516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 29022913 - 29022978
Alignment:
Q  6 atgaggaagtgtgtagaaacagtgaagaaggttgtggaaaaatggaaggaatatgcagaaactgag 71  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||| || |||||||    
T  29022913 atgaggaagtgtgtagaaacagtgaagaaggttgtggagaaatggaagggatatgtagcaactgag 29022978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 399
Target Start/End: Complemental strand, 41289199 - 41289102
Alignment:
Q  302 attttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||  |||| ||  |||||||   ||||||||||||| ||||| |||||||    
T  41289199 attttgcattcaaaatcaattttgattcaaactatccaaacaacatcaacctataagaatcacttttagtaaagtgtatccaaacataaatcaattca 41289102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 4941929 - 4941825
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    |||| ||||||||||||||||||||||||| ||| ||| ||| |||||||||||||||||||| ||   |||||||| || | |||||||| ||||| ||    
T  4941929 tttggtcattttacattcaaaatcaattttaattcaaattattcaaacaacatcaactcataagaatcgcttttaaataattttatccaaacataaatca 4941830  T
Q  395 attca 399  Q
    |||||    
T  4941829 attca 4941825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 307 - 399
Target Start/End: Complemental strand, 6399244 - 6399152
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||| ||  ||||||||   |||||||| ||| ||||| |||||||    
T  6399244 acattcaaaatcaattttgattaaaattatccaaacaacatcaactcataagaatcacttttaagtgagtgtatcgaaacataaatcaattca 6399152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 36114173 - 36114093
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||||||| ||  |||||||||| |||||||||||| ||||    
T  36114173 ttcaaaatcaattttgattcaaattatccaaacaatatcaactcataagaatcacttttaaacgagtgtatccaaacataa 36114093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 43550864 - 43550956
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    |||||||||||||||||||||| ||| |||||||||||||||||| || || ||  ||||||||  ||||||||||||| ||||| |||||||    
T  43550864 acattcaaaatcaattttgattcaaattatccaaacaacatcaacccacaagaatcacttttaataaagtgtatccaaacataaatcaattca 43550956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 381
Target Start/End: Original strand, 27649722 - 27649793
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatc 381  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||  |||||||||  ||||||||    
T  27649722 ttcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaatgagtgtatc 27649793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 308 - 390
Target Start/End: Original strand, 8124945 - 8125027
Alignment:
Q  308 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||| ||| ||  |||||||||  |||||||||||| ||||    
T  8124945 catttaaaatcaattttgattcaaactatccaaacaacttcaactcctaagaatcacttttaaatgagtgtatccaaacataa 8125027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 38152307 - 38152260
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  38152307 ttcaaaatcaattttgatttaaagtatccaaaccacatcaactcataa 38152260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 399
Target Start/End: Original strand, 3467512 - 3467598
Alignment:
Q  313 aaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    |||||||||||||||| ||||||||||| ||||||||| |||||| ||  ||||||||| || | |||||||| | ||| |||||||    
T  3467512 aaaatcaattttgattcaaactatccaaccaacatcaattcataagaatcacttttaaataaatatatccaaacagaaatcaattca 3467598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 357
Target Start/End: Complemental strand, 40742429 - 40742379
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    ||||| |||||||||||||||||||| |||||||||| |||||||||||||    
T  40742429 acatttaaaatcaattttgatttaaaatatccaaacatcatcaactcataa 40742379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 396
Target Start/End: Original strand, 26125545 - 26125634
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaat 396  Q
    |||||||||||||||||||||||||||  ||||||||  |||||||||||| ||  | ||||| |  |||||||||||| ||||| ||||    
T  26125545 acattcaaaatcaattttgatttaaaccgtccaaacattatcaactcataagaatcatttttacattagtgtatccaaacataaatcaat 26125634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 40742085 - 40742189
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    ||||||||||  |||||||||||||| ||| ||| |||  |||||||||| |||||||||||| ||  | |||||   ||||||||||||| ||||| ||    
T  40742085 tttgatcattacacattcaaaatcaagtttcattcaaatcatccaaacaatatcaactcataagaatcaattttattaaagtgtatccaaacataaatca 40742184  T
Q  395 attca 399  Q
    |||||    
T  40742185 attca 40742189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 41981136 - 41981180
Alignment:
Q  313 aaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||    
T  41981136 aaaatcaattttgattcaaagtatccaaacaacatcaactcataa 41981180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 399
Target Start/End: Complemental strand, 440332 - 440233
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| |||||||||||||| |||||||| || ||||||||||||| | ||||||||| ||  | ||||||   | |||||||||| ||||| |||||||    
T  440332 tcattatacattcaaaatcagttttgattcaatctatccaaacaacgttaactcataagaatcatttttaactgaatgtatccaaacataaatcaattca 440233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 399
Target Start/End: Complemental strand, 22936936 - 22936837
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| || |||||||| ||| ||||||| |||||||||||||||||||||  || || ||  |||| |||  ||||||||||||| ||||| |||||||    
T  22936936 tcattatatattcaaaaccaaatttgattcaaactatccaaacaacatcaatccacaagaatcacttctaataaagtgtatccaaacataaatcaattca 22936837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 390
Target Start/End: Complemental strand, 24897710 - 24897640
Alignment:
Q  320 attttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    ||||||||| ||| |||||||||||||||||||||||| ||  | ||||||| || |||||||||| ||||    
T  24897710 attttgattcaaattatccaaacaacatcaactcataagaatcaattttaaataaatgtatccaaacataa 24897640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 26243065 - 26243103
Alignment:
Q  308 cattcaaaatcaattttgatttaaactatccaaacaaca 346  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  26243065 cattcaaaatcaattttgattcaaactatccaaacaaca 26243103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 400
Target Start/End: Complemental strand, 34342985 - 34342896
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcat 400  Q
    ||||||||||||||||||| ||| ||||||||||||||| ||| |||| ||  ||||||||| || | |||||||| | ||| ||||||||    
T  34342985 ttcaaaatcaattttgattcaaattatccaaacaacatccact-ataagaatcacttttaaataaatttatccaaacaaaaatcaattcat 34342896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 321 - 399
Target Start/End: Complemental strand, 42143486 - 42143408
Alignment:
Q  321 ttttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| || ||| |||||||||||| ||||||||||| ||  ||||||||| |||| |||||||| ||||| |||||||    
T  42143486 ttttgtttcaaattatccaaacaacgtcaactcataagaatcacttttaaataagtttatccaaacataaatcaattca 42143408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 3619205 - 3619164
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  3619205 tacatttaaaatcaattttgattcaaactatccaaacaacat 3619164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 343
Target Start/End: Complemental strand, 37458440 - 37458403
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaaca 343  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  37458440 tacattcaaaatcaattttgattcaaactatccaaaca 37458403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 347
Target Start/End: Complemental strand, 24297721 - 24297687
Alignment:
Q  313 aaaatcaattttgatttaaactatccaaacaacat 347  Q
    |||||||||||||||| ||||||||||||||||||    
T  24297721 aaaatcaattttgattcaaactatccaaacaacat 24297687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 26575807 - 26575849
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacatc 348  Q
    ||||||||||| ||||||||||  |||||||||||||||||||    
T  26575807 tacattcaaaagcaattttgatcaaaactatccaaacaacatc 26575849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 347
Target Start/End: Original strand, 41408169 - 41408203
Alignment:
Q  313 aaaatcaattttgatttaaactatccaaacaacat 347  Q
    |||||||||||||||||||||||| ||||||||||    
T  41408169 aaaatcaattttgatttaaactattcaaacaacat 41408203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 2026093 - 2026134
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  2026093 tacattcaaaatcaattttttttaaaactatccaaacaacat 2026134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 17073748 - 17073707
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  17073748 tacattcaaaaacaattttgataaaaactatccaaacaacat 17073707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 17574522 - 17574563
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  17574522 tacattcaaaaacaattttgataaaaactatccaaacaacat 17574563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 35801829 - 35801788
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  35801829 tacattcaaaaacaattttgataaaaactatccaaacaacat 35801788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 396
Target Start/End: Original strand, 11126494 - 11126578
Alignment:
Q  312 caaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaat 396  Q
    |||| |||||||||||| |||||||||||||||||  ||||||| | ||  |||| |  | ||||||||||||| ||||| ||||    
T  11126494 caaactcaattttgattcaaactatccaaacaacacaaactcatgaaaatcacttatttataagtgtatccaaacataaatcaat 11126578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 41891955 - 41891915
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    |||| ||||||||||||||||| ||||| ||||||||||||    
T  41891955 acatccaaaatcaattttgattcaaactgtccaaacaacat 41891915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 371
Target Start/End: Complemental strand, 45147398 - 45147322
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaa 371  Q
    ||||||||||| |  ||||||||||||||||||| ||  ||| ||||||| ||||||| |||| ||  |||||||||    
T  45147398 tttgatcatttaatgttcaaaatcaattttgattcaagttattcaaacaatatcaacttataagaatcacttttaaa 45147322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 205 - 403
Target Start/End: Complemental strand, 41740829 - 41740630
Alignment:
Q  205 atcactacacattaaaaaatacagctttggcaaatgtgatataattgnnnnnnnnnn-gacaaaatataagaaattctatatttaggggcgtttgatcat 303  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||            |||||||||||||||||||||| |||||||| ||||| ||||    
T  41740829 atcactacacgttaaaaaatacagctttgacaaatgtgatataattttttatttttttgacaaaatataagaaattctatgtttaggggtgtttggtcat 41740730  T
Q  304 tttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcatctc 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||| |||||||||||||||||    
T  41740729 tttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaatcacttttaaacaagtgtattcaaacataaaccaattcatctc 41740630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 295 - 390
Target Start/End: Original strand, 32454504 - 32454599
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| ||||    
T  32454504 tttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaacaagtgtatccaaacataa 32454599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 40885177 - 40885282
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaact-acttttaaacaagtgtatccaaatataaacc 393  Q
    ||||||||||  | |||||||||||||||||||| ||||||||||||||| |||||||||||| |||| |||||||||||||||| |||||| ||||| |    
T  40885177 tttgatcattacatattcaaaatcaattttgattcaaactatccaaacaatatcaactcataaaaactcacttttaaacaagtgtgtccaaacataaatc 40885276  T
Q  394 aattca 399  Q
    ||||||    
T  40885277 aattca 40885282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 295 - 397
Target Start/End: Complemental strand, 40495502 - 40495401
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    |||||||||| ||||||| ||||||||||||||||||||||| ||||||| |||||||||||| ||  ||||||||| ||||||||||||| ||||| ||    
T  40495502 tttgatcattgtacattccaaatcaattttgatttaaactattcaaacaa-atcaactcataaaaatcacttttaaaaaagtgtatccaaacataaatca 40495404  T
Q  395 att 397  Q
    |||    
T  40495403 att 40495401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 3667821 - 3667925
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |||| ||  ||||||||   |||||||||||| ||||| ||    
T  3667821 tttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatca 3667920  T
Q  395 attca 399  Q
    |||||    
T  3667921 attca 3667925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 300 - 399
Target Start/End: Original strand, 22482161 - 22482260
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||| || |  ||  ||||||||  ||||||||||||| ||||| |||||||    
T  22482161 tcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcacttttaataaagtgtatccaaacataaatcaattca 22482260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 13253212 - 13253132
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||| ||  |||||||||  |||||||||||| ||||    
T  13253212 ttcaaaatcaattttgattcaaactattcaaacaacatcaactcataagaatcacttttaaatgagtgtatccaaacataa 13253132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 35760156 - 35760260
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |||| ||  | ||||||   |||||||||||| ||||| ||    
T  35760156 tttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcagttttaattgagtgtatccaaacataaatca 35760255  T
Q  395 attca 399  Q
    |||||    
T  35760256 attca 35760260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 319 - 399
Target Start/End: Complemental strand, 39988088 - 39988008
Alignment:
Q  319 aattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||||||||||||  ||||||||||||||||||||||| ||  ||||||||| ||||||||||||| ||||| |||||||    
T  39988088 aattttgatttaaatcatccaaacaacatcaactcataagaatcacttttaaataagtgtatccaaacataaatcaattca 39988008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 399
Target Start/End: Complemental strand, 7386059 - 7385973
Alignment:
Q  313 aaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    |||| ||||||||||||||| |||||||||||||||||||||||| ||  ||||||||| ||||||||  ||| ||||| |||||||    
T  7386059 aaaagcaattttgatttaaattatccaaacaacatcaactcataagaatcacttttaaataagtgtatttaaacataaatcaattca 7385973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 397
Target Start/End: Complemental strand, 8049178 - 8049094
Alignment:
Q  313 aaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 397  Q
    |||| |||||||||||||||  |||||||||||| |||||||||| ||  ||||||||| ||||||||||||| ||||| |||||    
T  8049178 aaaagcaattttgatttaaatcatccaaacaacaacaactcataagaatcacttttaaataagtgtatccaaacataaatcaatt 8049094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 391
Target Start/End: Complemental strand, 16158610 - 16158514
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaa 391  Q
    ||||||||||  |||||||||||||||||||||| |||  ||||||| |||||||| || ||| ||  ||||||||| ||||| |||||||||||||    
T  16158610 tttgatcattacacattcaaaatcaattttgattcaaatcatccaaagaacatcaattcctaagaatcacttttaaaaaagtgcatccaaatataaa 16158514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 41741027 - 41740967
Alignment:
Q  6 atgaggaagtgtgtagaaacagtgaagaaggttgtggaaaaatggaaggaatatgcagaaa 66  Q
    |||||||||||||||||||| ||||||||||||||||| |||| ||||| |||||||||||    
T  41741027 atgaggaagtgtgtagaaaccgtgaagaaggttgtggagaaattgaagggatatgcagaaa 41740967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 311 - 390
Target Start/End: Complemental strand, 2430425 - 2430346
Alignment:
Q  311 tcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||  |||| ||   ||||||||||||| ||||    
T  2430425 tcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttctattgaagtgtatccaaacataa 2430346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 41834871 - 41834963
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    |||||||||||||||||| ||| ||||||||||||||||||||| || ||| ||  |||| ||   ||||||||||||| ||||| |||||||    
T  41834871 acattcaaaatcaattttcattcaaactatccaaacaacatcaattcgtaagaatcacttctagtaaagtgtatccaaacataaatcaattca 41834963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 357
Target Start/End: Complemental strand, 3060355 - 3060306
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  3060355 acattcaaaatcaattttgattcaaactatccaaacaacat-aactcataa 3060306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 400
Target Start/End: Original strand, 10058056 - 10058146
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcat 400  Q
    ||||||||||||||| ||| ||||||||||||||||||||| || ||| ||  |||| ||   ||||||||||||| ||||| ||||||||    
T  10058056 ttcaaaatcaattttcattcaaactatccaaacaacatcaattcgtaagaatcacttctagtaaagtgtatccaaacataaatcaattcat 10058146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 16843517 - 16843563
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactc 353  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||    
T  16843517 acattcaaaatcaattatcatttaaactatccaaacaacatcaactc 16843563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 7714912 - 7714969
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    ||||| ||| ||||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  7714912 tcattatactttcaaaatcaattttaattcaaactatccaaacaacatcaacttataa 7714969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 33954034 - 33953986
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcat 355  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||||||||    
T  33954034 acattcaaaattaattttgattcaaactatccgaacaacatcaactcat 33953986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 397
Target Start/End: Complemental strand, 9275617 - 9275527
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 397  Q
    |||||||||||||| ||| ||| |||  ||||||||||||||||||||||| ||  | |||||   ||||||||||||| ||||| |||||    
T  9275617 acattcaaaatcaagtttcattcaaatcatccaaacaacatcaactcataagaatcaattttattaaagtgtatccaaacataaatcaatt 9275527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 396
Target Start/End: Complemental strand, 28869613 - 28869547
Alignment:
Q  330 aaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaat 396  Q
    |||||||||||||||||||||||||||| ||  ||||||||  |||||||| |||| ||||| ||||    
T  28869613 aaactatccaaacaacatcaactcataagaatcacttttaagtaagtgtattcaaacataaatcaat 28869547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 390
Target Start/End: Complemental strand, 40791209 - 40791119
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    ||||| |||||||| |||||||||||||| ||  ||||||||||| ||||||||| || ||  ||||||||  ||| ||||||||| ||||    
T  40791209 tcattatacattcacaatcaattttgattcaatgtatccaaacaatatcaactcaaaagaatcacttttaattaagcgtatccaaacataa 40791119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 390
Target Start/End: Original strand, 42146280 - 42146370
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    ||||| |||||||| |||||||||||||| ||  ||||||||||| ||||||||| || ||  ||||||||  ||| ||||||||| ||||    
T  42146280 tcattatacattcacaatcaattttgattcaatgtatccaaacaatatcaactcaaaagaatcacttttaattaagcgtatccaaacataa 42146370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 3747728 - 3747683
Alignment:
Q  302 attttacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    |||||||||  |||||||||||||||| ||||||||||||||||||    
T  3747728 attttacatgtaaaatcaattttgattaaaactatccaaacaacat 3747683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 24045803 - 24045860
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    ||||| ||| ||||||||||||||| ||| ||| |||||||||||||||||| |||||    
T  24045803 tcattgtacgttcaaaatcaattttaattcaaattatccaaacaacatcaacccataa 24045860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 27021100 - 27021153
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaac-tatccaaacaacatcaact 352  Q
    ||||| ||||||||||||||||||||||| || | |||||||||||||||||||    
T  27021100 tcattatacattcaaaatcaattttgattcaatcttatccaaacaacatcaact 27021153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 32030698 - 32030739
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaac 351  Q
    ||||||||||||||||||| ||||||| ||||||||||||||    
T  32030698 ttcaaaatcaattttgattcaaactattcaaacaacatcaac 32030739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 40979996 - 40980037
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  40979996 tacattcaaaatcaattttgatcaaaactatccaaacaacat 40980037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 4292128 - 4292220
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||||||||| |||||||||| ||| ||||||||||| ||||||  | || ||  |||| |||  ||||||||||||| ||||| |||||||    
T  4292128 acattcaaaattaattttgattcaaattatccaaacaatatcaaccaacaagaatcacttctaattaagtgtatccaaacataaatcaattca 4292220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 33082465 - 33082423
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacatc 348  Q
    ||||||||||| ||||||||||  |||||||||||||||||||    
T  33082465 tacattcaaaagcaattttgatcaaaactatccaaacaacatc 33082423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 399
Target Start/End: Complemental strand, 5710511 - 5710427
Alignment:
Q  314 aaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||||||||| ||| ||||||||||||||| ||| |||||||| ||  |||| | || ||| ||||||||| ||||| |||||||    
T  5710511 aaatcaatttttattcaaactatccaaacaatatctactcataaaaatcacttgt-aataagcgtatccaaacataaagcaattca 5710427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 7071544 - 7071503
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  7071544 tacattcaaaaacaattttgatcaaaactatccaaacaacat 7071503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 8958020 - 8957979
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  8958020 tacattcaaaagcaattttgataaaaactatccaaacaacat 8957979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 11017953 - 11017912
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  11017953 tacattcaaaaacaattttgatgaaaactatccaaacaacat 11017912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 20069204 - 20069163
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  20069204 tacattcaaaaacaattttgatcaaaactatccaaacaacat 20069163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 27738077 - 27738036
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  27738077 tacattcaaaagcaattttgataaaaactatccaaacaacat 27738036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 31906018 - 31906059
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  31906018 tacattcaaaagcaattttgataaaaactatccaaacaacat 31906059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 33386996 - 33386955
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  33386996 tacattcaaaaacaattttgatcaaaactatccaaacaacat 33386955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 25256357 - 25256313
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacatcaa 350  Q
    ||||||||||| ||||||||||  |||||||| ||||||||||||    
T  25256357 tacattcaaaaacaattttgatcaaaactatctaaacaacatcaa 25256313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 25320146 - 25320102
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacatcaa 350  Q
    ||||||||||| ||||||||||  |||||||| ||||||||||||    
T  25320146 tacattcaaaaacaattttgatcaaaactatctaaacaacatcaa 25320102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 205 - 403
Target Start/End: Original strand, 23358127 - 23358328
Alignment:
Q  205 atcactacacattaaaaaatacagctttggcaaatgtgatataattgnnnnnnnnnngac---aaaatataagaaattctatatttaggggcgtttgatc 301  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||          |     |||||| || ||||||||  |||||||| ||||| ||    
T  23358127 atcactacacgttaaaaaatacagctttggtaaatgtgatataattgttttttttttgttggaaaaatacaacaaattctacgtttaggggtgtttggtc 23358226  T
Q  302 attttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcatc 401  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||  ||||||||||||||||||||||| |||||| | ||||||    
T  23358227 attttacattcaaaatcaattttgattcaaactatccaaacaacattaactcatcacaatcacttttaaacaagtgtatccaaacataaactatttcatc 23358326  T
Q  402 tc 403  Q
    ||    
T  23358327 tc 23358328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 295 - 390
Target Start/End: Complemental strand, 7472819 - 7472724
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||  ||||||||| ||||||||||||| ||||    
T  7472819 tttggtcattttacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaataagtgtatccaaacataa 7472724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 287 - 398
Target Start/End: Complemental strand, 44619215 - 44619104
Alignment:
Q  287 taggggcgtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaat 386  Q
    |||||| ||||| ||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| ||  | |||||||||||||||||||||     
T  44619215 taggggtgtttggtcattttacattcaaaatcgattttaattcaaactatccaaacaacatcaactcataataatcatttttaaacaagtgtatccaaac 44619116  T
Q  387 ataaaccaattc 398  Q
    ||||| ||||||    
T  44619115 ataaatcaattc 44619104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 287 - 399
Target Start/End: Original strand, 2215208 - 2215318
Alignment:
Q  287 taggggcgtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaat 386  Q
    |||||| ||||| ||||||||||||||||||||||| | ||||||| ||||||||||||||||||||  || || || |||||||||||||||||||||     
T  2215208 taggggtgtttggtcattttacattcaaaatcaattctaatttaaattatccaaacaacatcaactc--aaaaattatttttaaacaagtgtatccaaac 2215305  T
Q  387 ataaaccaattca 399  Q
    ||||| |||||||    
T  2215306 ataaatcaattca 2215318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 294 - 399
Target Start/End: Complemental strand, 9988648 - 9988543
Alignment:
Q  294 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 393  Q
    ||||| |||||  |||||||||||||||||| ||| |||||||||||||||||||||||||||  ||  ||||||||| ||||||||||||| ||||| |    
T  9988648 gtttggtcattacacattcaaaatcaattttcattcaaactatccaaacaacatcaactcatatgaatcacttttaaataagtgtatccaaacataaatc 9988549  T
Q  394 aattca 399  Q
    ||||||    
T  9988548 aattca 9988543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 399
Target Start/End: Complemental strand, 28127439 - 28127329
Alignment:
Q  289 ggggcgtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatat 388  Q
    |||| ||||| |||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |||| ||  ||||||||   |||||||||||| ||    
T  28127439 ggggtgtttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacat 28127340  T
Q  389 aaaccaattca 399  Q
    ||| |||||||    
T  28127339 aaatcaattca 28127329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 23357928 - 23357993
Alignment:
Q  6 atgaggaagtgtgtagaaacagtgaagaaggttgtggaaaaatggaaggaatatgcagaaactgag 71  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||    
T  23357928 atgaggaagtgtgtagaaacagtgaagaaggttgtggagaaatggaagggatatgccgaaactgag 23357993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 2213468 - 2213572
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |||| ||  ||||||||   |||||||||||| ||||| ||    
T  2213468 tttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatca 2213567  T
Q  395 attca 399  Q
    |||||    
T  2213568 attca 2213572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 25940387 - 25940283
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    |||| ||||| || |||||||||||||||||||| ||||| |||||||||||||| ||||||| ||  |||| || || ||||||| |||||||||| ||    
T  25940387 tttggtcattatatattcaaaatcaattttgattcaaactgtccaaacaacatcatctcataataatcacttctatacgagtgtattcaaatataaatca 25940288  T
Q  395 attca 399  Q
    |||||    
T  25940287 attca 25940283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 39141600 - 39141520
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||  | |||||||  |||||||||||| ||||    
T  39141600 ttcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcatttttaaatgagtgtatccaaacataa 39141520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 307 - 390
Target Start/End: Complemental strand, 5916375 - 5916292
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |  ||  ||||||||  ||||||||||||| ||||    
T  5916375 acattcaaaatcaattttgattcaaactatccaaacaacatcaactcacatgaatcacttttaataaagtgtatccaaacataa 5916292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 307 - 390
Target Start/End: Original strand, 36312251 - 36312334
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |  ||  ||||||||  ||||||||||||| ||||    
T  36312251 acattcaaaatcaattttgattcaaactatccaaacaacatcaactcacatgaatcacttttaataaagtgtatccaaacataa 36312334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 8170280 - 8170337
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  8170280 tcattatacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataa 8170337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 300 - 399
Target Start/End: Original strand, 7296122 - 7296221
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| || |||||||||||||||||| |||||||||||||| |||||||| |||| | ||  ||||||| |  |||||||||||| ||||| |||||||    
T  7296122 tcattatatattcaaaatcaattttgacttaaactatccaaataacatcaagtcatgataatcacttttatatgagtgtatccaaacataaatcaattca 7296221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 390
Target Start/End: Original strand, 14821137 - 14821220
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||| ||  |||| ||   ||||||||||||| ||||    
T  14821137 acattcaaaatcaattttgattcaaaatatccaaacaacatcaactcataagaatcacttctagtaaagtgtatccaaacataa 14821220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 399
Target Start/End: Complemental strand, 1945166 - 1945081
Alignment:
Q  314 aaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||||||||||||| |||||||||||||||||||||| || |  ||  ||||||||  ||||||||||||| ||||| |||||||    
T  1945166 aaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcacttttaataaagtgtatccaaacataaatcaattca 1945081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 355
Target Start/End: Complemental strand, 7295487 - 7295432
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcat 355  Q
    ||||| || |||||||||||| ||||| ||||||||||||||||||||||||||||    
T  7295487 tcattatatattcaaaatcaagtttgacttaaactatccaaacaacatcaactcat 7295432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 399
Target Start/End: Original strand, 28261261 - 28261360
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| |||||| ||||| |||||||||| ||||||| |||||||||||||||||||| ||  |||| ||    || ||||||||||||||| |||||||    
T  28261261 tcattatacatttaaaattaattttgattcaaactattcaaacaacatcaactcataagaatcacttctatgtgagagtatccaaatataaatcaattca 28261360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 31562818 - 31562747
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgt 378  Q
    |||||||||||||||||||||| ||| ||||||||||| || ||||||||| ||  |||||||||| |||||    
T  31562818 acattcaaaatcaattttgattcaaattatccaaacaatataaactcataagaatcacttttaaacgagtgt 31562747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 42516110 - 42516063
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacatcaactc 353  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  42516110 tacattcaaaatcaattttaattcaaactatccaaacaacatcaactc 42516063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 349
Target Start/End: Original strand, 18511077 - 18511118
Alignment:
Q  308 cattcaaaatcaattttgatttaaactatccaaacaacatca 349  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  18511077 cattcaaaatcaattttgatttaaattatccaaacaacatca 18511118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 36548167 - 36548224
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    ||||| ||| ||||||||||||||| ||||||| |||||||||||||||||| |||||    
T  36548167 tcattgtacgttcaaaatcaattttaatttaaattatccaaacaacatcaacccataa 36548224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 370
Target Start/End: Original strand, 32501961 - 32502023
Alignment:
Q  308 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaa 370  Q
    |||| |||||||||||||||| |||||| |||||||| |||||||| ||| || |||||||||    
T  32501961 catttaaaatcaattttgattcaaactacccaaacaatatcaactcgtaaaaattacttttaa 32502023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 399
Target Start/End: Complemental strand, 26208076 - 26207971
Alignment:
Q  294 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 393  Q
    ||||| ||||| |||||| |||||||||||||||| | |  ||||||||||||||||||  ||| ||  | ||||||  ||||||||| ||| ||||| |    
T  26208076 gtttggtcattgtacatttaaaatcaattttgattcatataatccaaacaacatcaacttgtaagaatcaattttaattaagtgtatcaaaacataaatc 26207977  T
Q  394 aattca 399  Q
    ||||||    
T  26207976 aattca 26207971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 3853874 - 3853914
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  3853874 acattcaaaagcaattttgattcaaactatccaaacaacat 3853914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 2234900 - 2234950
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    |||||| ||||| |||||||||| |||||||||||||||||| |||||||||    
T  2234900 tacatttaaaattaattttgattcaaactatccaaacaacat-aactcataa 2234950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 15283389 - 15283350
Alignment:
Q  309 attcaaaatcaattttgatttaaactatccaaacaacatc 348  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  15283389 attcaaaatcaattttaatctaaactatccaaacaacatc 15283350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 345
Target Start/End: Complemental strand, 37640275 - 37640236
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaac 345  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  37640275 tacattcaaaatcaattttgataaaaactatccaaacaac 37640236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 381
Target Start/End: Complemental strand, 42089639 - 42089592
Alignment:
Q  334 tatccaaacaacatcaactcataacaactacttttaaacaagtgtatc 381  Q
    |||||||||||||||||||||||| ||  ||||||||| |||||||||    
T  42089639 tatccaaacaacatcaactcataagaatcacttttaaataagtgtatc 42089592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 399
Target Start/End: Original strand, 27911386 - 27911472
Alignment:
Q  313 aaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    |||||||||||| ||||||| |||||||| ||||||||||   || ||  |||||||||  ||| |||||||| ||||| |||||||    
T  27911386 aaaatcaattttaatttaaagtatccaaataacatcaacttgaaataatcacttttaaatgagtatatccaaacataaatcaattca 27911472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 7474113 - 7474154
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  7474113 tacattcaaaagcaattttgataaaaactatccaaacaacat 7474154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 17481374 - 17481415
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  17481374 tacattcaaaagcaattttgataaaaactatccaaacaacat 17481415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 28641616 - 28641708
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaa-caagtgtatccaaatataaaccaattca 399  Q
    ||||| |||||||||||| ||| ||  ||||||||||||||||||| |||| ||  |||||||||  |||| || ||||||||||| |||||||    
T  28641616 acatttaaaatcaattttaattcaacatatccaaacaacatcaacttataataatcacttttaaatgaagt-tacccaaatataaatcaattca 28641708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 43341788 - 43341747
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  43341788 tacattcaaaagcaattttgataaaaactatccaaacaacat 43341747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 397
Target Start/End: Complemental strand, 43436410 - 43436325
Alignment:
Q  312 caaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 397  Q
    ||||||||||||| ||  || |||||||||||||||||| |||||  || ||||||||||  |||| ||| ||| ||||| |||||    
T  43436410 caaaatcaattttaatccaatctatccaaacaacatcaattcatatgaattacttttaaatgagtgcatcaaaacataaatcaatt 43436325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 43695614 - 43695655
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  43695614 tacattcaaaaacaattttgatcgaaactatccaaacaacat 43695655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 16467066 - 16467110
Alignment:
Q  313 aaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    ||||| ||||||||| |||||||||||||| |||||||| |||||    
T  16467066 aaaattaattttgatctaaactatccaaactacatcaacccataa 16467110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 25748027 - 25747975
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    |||||| ||| ||| ||||||| ||||||||||| |||||| |||||||||||    
T  25748027 tttgataattatactttcaaaagcaattttgattcaaactacccaaacaacat 25747975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 205 - 403
Target Start/End: Complemental strand, 291949 - 291758
Alignment:
Q  205 atcactacacattaaaaaatacagctttggcaaatgtgatataattgnnnnnnnnnn-----gacaaaatataagaaattctatatttaggggcgtttga 299  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||               || ||||||||||||||||||| |||||||| |||||     
T  291949 atcactacaggttaaaaaatacagctttggcaaatgtgatataattgtttttttttttttttgataaaatataagaaattctatgtttaggggtgtttgg 291850  T
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    |||||||||||||||||||||||||||||         |||||||   |||||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  291849 tcattttacattcaaaatcaattttgatt---------caaacaa---caactcataacaatcacttttaaacaagtgtatccaaacataaaccaattca 291762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 295 - 397
Target Start/End: Original strand, 12468190 - 12468291
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||  ||||||||| ||||||||||||||||||| ||    
T  12468190 tttggtcattgtacattcaaaatcaattttgattcaaactatccaaacaa-atcaactcataaaaatcacttttaaaaaagtgtatccaaatataaatca 12468288  T
Q  395 att 397  Q
    |||    
T  12468289 att 12468291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 399
Target Start/End: Complemental strand, 42850356 - 42850264
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||| ||  ||||||||  ||||||||||||| ||||| |||||||    
T  42850356 acattcaaaatcaattttgatgtaaaatatccaaacaacatcaactcataagaatcacttttaaggaagtgtatccaaacataaatcaattca 42850264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 295 - 390
Target Start/End: Complemental strand, 43729026 - 43728931
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||| |||||| | |||||||||||||||||||| |||||||||||||||||||||||||||| ||  ||||||||| |||| |||||||| ||||    
T  43729026 tttggtcatttaatattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaataagtttatccaaacataa 43728931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 12247412 - 12247492
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||| ||  ||||||||||||||||||||||| ||||    
T  12247412 ttcaaaatcaattttgattcaaattctccaaacaacatcaactcataaaaatcacttttaaacaagtgtatccaaacataa 12247492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 300 - 399
Target Start/End: Complemental strand, 35569346 - 35569247
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||| || |  ||  ||||||||  ||||||||||||| ||||| |||||||    
T  35569346 tcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcacttttaataaagtgtatccaaacataaatcaattca 35569247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 399
Target Start/End: Original strand, 31223350 - 31223455
Alignment:
Q  294 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 393  Q
    ||||| |||||  |||||||||||||||||| ||| |||||||||||||||||||||||||||| ||  |||| ||   ||||||||||||| ||||| |    
T  31223350 gtttggtcattacacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataagaatcacttctattaaagtgtatccaaacataaatc 31223449  T
Q  394 aattca 399  Q
    ||||||    
T  31223450 aattca 31223455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 399
Target Start/End: Original strand, 35536064 - 35536152
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||| ||  |||||||||| |||||||| ||| || ||||||||||    
T  35536064 ttcaaaatcaattttgattcaaattatccaaacaacatcaactcataagaatcacttttaaacgagtgtatctaaacat-aaccaattca 35536152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 300 - 399
Target Start/End: Complemental strand, 20800421 - 20800322
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||||||||| || |  ||  ||||||||  ||||||||||||| ||||| |||||||    
T  20800421 tcattatacattcaaaatcaatattgattcaaactatccaaacaacatcaacccacatgaatcacttttaataaagtgtatccaaacataaatcaattca 20800322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 357
Target Start/End: Original strand, 6464597 - 6464647
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6464597 acattcaaaatcaattttgattcaaactatccaaacaacatcaactcataa 6464647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 357
Target Start/End: Original strand, 45710038 - 45710088
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45710038 acattcaaaatcaattttgattcaaactatccaaacaacatcaactcataa 45710088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 294 - 399
Target Start/End: Original strand, 48510884 - 48510989
Alignment:
Q  294 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 393  Q
    |||||||||||  ||| | |||||||||||||||  | ||||| ||||||||||||| |||||| ||  |||||||| |||||||||||||| ||||| |    
T  48510884 gtttgatcattacacacttaaaatcaattttgatacatactattcaaacaacatcaattcataagaatcacttttaagcaagtgtatccaaacataaatc 48510983  T
Q  394 aattca 399  Q
    ||||||    
T  48510984 aattca 48510989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 10470578 - 10470629
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  10470578 tacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataa 10470629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 308 - 390
Target Start/End: Original strand, 6166100 - 6166182
Alignment:
Q  308 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||| |||||||||||||||| |||||| ||||||||||||||||| ||| ||  |||||||||  |||||||||||| ||||    
T  6166100 catttaaaatcaattttgattcaaactacccaaacaacatcaactcctaagaatcacttttaaatgagtgtatccaaacataa 6166182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 307 - 357
Target Start/End: Original strand, 31933716 - 31933766
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  31933716 acattcaaaatcaattttgatgtaaaatatccaaacaacatcaactcataa 31933766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 399
Target Start/End: Original strand, 1199819 - 1199908
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||||||||||||||||| |||||||||||||||||||||  || || ||  |||| |||  ||||||||||||| ||||| |||||||    
T  1199819 ttcaaaatcaattttgattcaaactatccaaacaacatcaatccacaagaatcacttctaataaagtgtatccaaacataaatcaattca 1199908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 400
Target Start/End: Original strand, 36205180 - 36205273
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcat 400  Q
    |||||||||||||||||||||| ||||||||||| ||||||  |||| ||| ||  ||||||||| |||| |||||||  | ||||||||||||    
T  36205180 acattcaaaatcaattttgattcaaactatccaagcaacattcactcgtaagaatcacttttaaataagtttatccaatcaaaaaccaattcat 36205273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 399
Target Start/End: Complemental strand, 40229604 - 40229515
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||| || ||  || | |||  ||||||||||||| ||||| |||||||    
T  40229604 ttcaaaatcaattttgattcaaattatccaaacaacatcaactcagaagaatcacctgtaagaaagtgtatccaaacataaatcaattca 40229515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 399
Target Start/End: Complemental strand, 4369939 - 4369847
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| |||||||||||||||| || ||||||||||||||||||||||||| ||  ||||||||   || ||| ||||| ||||| |||||||    
T  4369939 acatttaaaatcaattttgattcaacctatccaaacaacatcaactcataagaatcacttttaagtgagggtacccaaacataaatcaattca 4369847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 399
Target Start/End: Original strand, 13055988 - 13056078
Alignment:
Q  308 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||||||||||||||| ||| ||||||||||||||| |||||||||||| ||  |||||| || ||| |||| |||| ||||| |||||||    
T  13055988 cattcaaaatcaatttttattcaaactatccaaacaatatcaactcataaaaatcactttt-aataagcgtattcaaacataaatcaattca 13056078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 352
Target Start/End: Original strand, 13931614 - 13931657
Alignment:
Q  309 attcaaaatcaattttgatttaaactatccaaacaacatcaact 352  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  13931614 attcaaaatcaattttgattcaaactatccaaacaacatcaact 13931657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 292154 - 292096
Alignment:
Q  6 atgaggaagtgtgtagaaacagtgaagaaggttgtggaaaaatggaaggaatatgcaga 64  Q
    ||||| |||||||||||||| ||||||||| ||||||| |||||||||| |||||||||    
T  292154 atgagaaagtgtgtagaaaccgtgaagaagtttgtggagaaatggaagggatatgcaga 292096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 5410631 - 5410692
Alignment:
Q  309 attcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaa 370  Q
    |||||||||||||| ||||| ||||||||||||||||||||| |||||| ||  ||||||||    
T  5410631 attcaaaatcaattatgattcaaactatccaaacaacatcaagtcataagaatcacttttaa 5410692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 399
Target Start/End: Complemental strand, 7826491 - 7826399
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| |||||||||||||||| || |||||||||||||||||| |||||| ||  ||||||||   || ||| ||||| ||||| |||||||    
T  7826491 acatttaaaatcaattttgattcaacctatccaaacaacatcaattcataagaatcacttttaagtgagggtacccaaacataaatcaattca 7826399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 47123363 - 47123467
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    |||||| ||| |||||  |||| ||||||||||||||  ||||||||||||| ||||| |||| ||  ||||||||  ||||||||||||| | ||| ||    
T  47123363 tttgataattatacatctaaaagcaattttgatttaatgtatccaaacaacaccaacttataagaatcacttttaacgaagtgtatccaaacaaaaatca 47123462  T
Q  395 attca 399  Q
    |||||    
T  47123463 attca 47123467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 399
Target Start/End: Complemental strand, 50977476 - 50977385
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    |||||||||||||||||| ||| ||||||||||||||| ||| |||||||| ||  |||| | || ||| ||||||||| ||||| |||||||    
T  50977476 acattcaaaatcaatttttattcaaactatccaaacaatatctactcataaaaatcacttgt-aataagcgtatccaaacataaaacaattca 50977385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 390
Target Start/End: Original strand, 25230000 - 25230079
Alignment:
Q  311 tcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||||||||||||| ||| ||||||||||||||||||||||| |||| ||  |||| ||   ||||||||||||| ||||    
T  25230000 tcaaaatcaattttcattcaaactatccaaacaacatcaactaataagaatcacttctattaaagtgtatccaaacataa 25230079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 370
Target Start/End: Complemental strand, 11023465 - 11023403
Alignment:
Q  308 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaa 370  Q
    |||| |||||||||||||||| |||||| |||||||| |||||||| ||| || |||||||||    
T  11023465 catttaaaatcaattttgattcaaactacccaaacaatatcaactcgtaaaaattacttttaa 11023403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 397
Target Start/End: Original strand, 26058235 - 26058320
Alignment:
Q  312 caaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 397  Q
    ||||||||||||| ||  || |||||||||||||||||| |||||  || ||||||||||  |||| ||||||| ||||| |||||    
T  26058235 caaaatcaattttaatccaatctatccaaacaacatcaattcatatgaattacttttaaatgagtgcatccaaacataaatcaatt 26058320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 46033251 - 46033210
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  46033251 tacattcaaaatcaattttgataaaaactatccaaacaacat 46033210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 11051447 - 11051407
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  11051447 acattcaaaatcaatttttattcaaactatccaaacaacat 11051407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 347
Target Start/End: Original strand, 15884216 - 15884255
Alignment:
Q  308 cattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  15884216 cattcaaaatcaattttgatccaaactatccaaacaacat 15884255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 36118120 - 36118157
Alignment:
Q  313 aaaatcaattttgatttaaactatccaaacaacatcaa 350  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  36118120 aaaatcaattttggtttaaactatccaaacaatatcaa 36118157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 41512729 - 41512770
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||||||||||||||  |||| |||||||||||||    
T  41512729 tacattcaaaatcaattttgatcaaaacaatccaaacaacat 41512770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 42137211 - 42137170
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  42137211 tacattcaaaagcaattttgatcaaaactatccaaacaacat 42137170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 27801763 - 27801699
Alignment:
Q  333 ctatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 397  Q
    |||||||||||||||||| |||||  || ||||||||||  |||| ||||||| ||||| |||||    
T  27801763 ctatccaaacaacatcaattcatatgaattacttttaaatgagtgcatccaaacataaatcaatt 27801699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 40821814 - 40821858
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaac 351  Q
    ||||||||| |||||||||||| ||| |||||||| |||||||||    
T  40821814 acattcaaactcaattttgattcaaattatccaaataacatcaac 40821858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 295 - 390
Target Start/End: Original strand, 9456079 - 9456174
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||  ||||||||||||||||||||||| ||||    
T  9456079 tttggtcattttacattcaaaatcaattttgattcaaactatccaaacaagatcaactcataagaatcacttttaaacaagtgtatccaaacataa 9456174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 295 - 400
Target Start/End: Complemental strand, 43738074 - 43737969
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    |||| |||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| ||  ||||||||| |||| |||||||| | ||| ||    
T  43738074 tttggtcatttcacattcaaaatcaattttgattcaaactatccaaacaacatccactcataagaatcacttttaaataagtttatccaaacaaaaatca 43737975  T
Q  395 attcat 400  Q
    ||||||    
T  43737974 attcat 43737969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 307 - 390
Target Start/End: Original strand, 48134566 - 48134649
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||| ||  |||||||||||||| |||||||| ||||    
T  48134566 acattcaaaatcaattttgattcaaactatccaaacaacatcaacttataaaaatcacttttaaacaagtttatccaaacataa 48134649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 294 - 399
Target Start/End: Original strand, 37562543 - 37562648
Alignment:
Q  294 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 393  Q
    ||||| |||||  |||| ||||||||||||| ||| |||||||||||||||||||||||||||  ||  ||||||||| ||||||||||||| ||||| |    
T  37562543 gtttggtcattacacatacaaaatcaattttcattcaaactatccaaacaacatcaactcatatgaatcacttttaaataagtgtatccaaacataaatc 37562642  T
Q  394 aattca 399  Q
    ||||||    
T  37562643 aattca 37562648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 307 - 399
Target Start/End: Complemental strand, 3622583 - 3622491
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||| ||| ||  ||||||||  ||||||||||||| ||||| |||||||    
T  3622583 acatttaaaatcaattttgatttatactatccaaacaacatcaactcgtaagaatcacttttaagtaagtgtatccaaacataaatcaattca 3622491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 357
Target Start/End: Complemental strand, 47301687 - 47301630
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  47301687 tcattttacattcaaaatcaattttgattcaaactatccaaacaacatcaacccataa 47301630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 34010329 - 34010409
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||| ||| |||||||||  ||||||| |||| ||||    
T  34010329 ttcaaaattaattttgattcaaactatccaaacaacatcaactcataagaaccacttttaaatgagtgtattcaaacataa 34010409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 309 - 400
Target Start/End: Original strand, 3342778 - 3342869
Alignment:
Q  309 attcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcat 400  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||| ||  |||| ||   ||||||||||||| ||||| ||||||||    
T  3342778 attcaaaatcaattttgattcaaactattcaaacaacatcaactcataagaatcacttctattaaagtgtatccaaacataaatcaattcat 3342869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 310 - 399
Target Start/End: Complemental strand, 34366101 - 34366013
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||| ||  |||||| || ||| ||||||||| ||||| |||||||    
T  34366101 ttcaaaatcaatttttattcaaactatccaaacaacatcaactcataaaaatcactttt-aataagcgtatccaaacataaatcaattca 34366013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 310 - 399
Target Start/End: Complemental strand, 39391257 - 39391168
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||||||||||||||||| ||||||| ||||||||||||| |||||| ||  |||| |||  ||||||||||||| ||||| |||||||    
T  39391257 ttcaaaatcaattttgattcaaactattcaaacaacatcaattcataagaatcacttgtaagaaagtgtatccaaacataaatcaattca 39391168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 300 - 399
Target Start/End: Complemental strand, 47217671 - 47217572
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| ||| ||||||||||||||| ||| |||||||||||||||||||||| ||| | ||  |||||||| | |||| ||||||| ||||| |||||||    
T  47217671 tcattgtacgttcaaaatcaattttaattcaaactatccaaacaacatcaacccatcaaaatcacttttaagcgagtgcatccaaacataaatcaattca 47217572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 399
Target Start/End: Original strand, 19095926 - 19096013
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||||| ||  | |||||||| |||||||||||| || ||||||||||    
T  19095926 ttcaaaatcaattttgattcaaattatccaaacaacat-aactcataagaatcatttttaaacgagtgtatccaaacat-aaccaattca 19096013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 38230054 - 38230146
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| || |  ||  ||||||||  || |||||||||| ||||| |||||||    
T  38230054 acatttaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcacttttaataaaatgtatccaaacataaatcaattca 38230146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 399
Target Start/End: Complemental strand, 44967518 - 44967430
Alignment:
Q  311 tcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||| ||  |||| ||   |||||||| |||| ||||| |||||||    
T  44967518 tcaaaatcaattttgattcaaattatccaaacaacatcaactcataagaatcacttctattaaagtgtattcaaacataaatcaattca 44967430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 370
Target Start/End: Complemental strand, 12632206 - 12632143
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaa 370  Q
    |||||||||||||||||||||| |||| || |||||||||||||||||||| ||  ||||||||    
T  12632206 acattcaaaatcaattttgattcaaacaattcaaacaacatcaactcataagaatcacttttaa 12632143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 3375476 - 3375568
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    |||||||||||||||||||||  |||  |||||||||||||| |||||||| ||  ||||||||   |||||||||||| | ||| |||||||    
T  3375476 acattcaaaatcaattttgatccaaatcatccaaacaacatcgactcataagaatcacttttaagtgagtgtatccaaacacaaatcaattca 3375568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 3750678 - 3750722
Alignment:
Q  313 aaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||    
T  3750678 aaaattaattttgatttaaactatccaaacaacatcaattcataa 3750722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 32205913 - 32206003
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| |||||||||||||||| | |||||| ||||||||| ||||||||| ||  ||||||||  ||||||||||||| ||||| |||||||    
T  32205913 acatttaaaatcaattttgattcatactatc-aaacaacat-aactcataagaatcacttttaagtaagtgtatccaaacataaatcaattca 32206003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 37639416 - 37639508
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| ||||| |||||||||| |||||||||||||||||||||| || || ||  ||||||||  |||| | |||||| ||||| |||||||    
T  37639416 acatttaaaattaattttgattcaaactatccaaacaacatcaacccacaagaatcacttttaataaagtttctccaaacataaatcaattca 37639508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 351
Target Start/End: Complemental strand, 10372080 - 10372037
Alignment:
Q  308 cattcaaaatcaattttgatttaaactatccaaacaacatcaac 351  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||    
T  10372080 cattcaaaatcaattttgattcaaactatccgaacaacatcaac 10372037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 399
Target Start/End: Original strand, 48459702 - 48459788
Alignment:
Q  313 aaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    |||||||||||| ||  | ||||||||||||||||| | |||||| ||  ||||||||  ||||||||||||| ||||| |||||||    
T  48459702 aaaatcaattttaatacatactatccaaacaacatccattcataagaatcacttttaagtaagtgtatccaaacataaatcaattca 48459788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 4035919 - 4035960
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  4035919 tacattcaaaagcaattttgattaaaactatccaaacaacat 4035960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 397
Target Start/End: Original strand, 32186931 - 32187016
Alignment:
Q  312 caaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 397  Q
    ||||||||||||| ||  || |||||||||||||||||| |||||  || ||||||||||  |||| ||||||| ||||| |||||    
T  32186931 caaaatcaattttaatccaatctatccaaacaacatcaattcatatgaattacttttaaatgagtgcatccaaacataaatcaatt 32187016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 370
Target Start/End: Complemental strand, 34011082 - 34011021
Alignment:
Q  310 ttcaaaatcaattttgatttaaacta-tccaaacaacatcaactcataacaactacttttaa 370  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||||| ||  ||||||||    
T  34011082 ttcaaaatcaattttgatttaaagtaccccaaacaacatcaactcataagaatcacttttaa 34011021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 40903291 - 40903250
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||| |||||||||||||||||| |||||||||||||||||    
T  40903291 tacatccaaaatcaattttgatttgaactatccaaacaacat 40903250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 397
Target Start/End: Original strand, 41715648 - 41715733
Alignment:
Q  312 caaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 397  Q
    ||||||||||||| ||  || |||||||||||||||||| |||||  || ||||||||||  |||| ||||||| ||||| |||||    
T  41715648 caaaatcaattttaatccaatctatccaaacaacatcaattcatatgaattacttttaaatgagtgcatccaaacataaatcaatt 41715733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 399
Target Start/End: Original strand, 42904551 - 42904631
Alignment:
Q  319 aattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    |||||||||||||| ||| ||||||| || || |||||| ||  |||||||||| |||||||| ||| ||||| |||||||    
T  42904551 aattttgatttaaaatatacaaacaaaattaattcataagaatcacttttaaacgagtgtatcaaaacataaatcaattca 42904631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 47021905 - 47021997
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    |||||||||||||||||| ||| ||| ||||||||||||||||| || ||| ||  || | ||   ||||||||||||| ||||| |||||||    
T  47021905 acattcaaaatcaattttcattcaaattatccaaacaacatcaattcgtaagaatcacatctagtaaagtgtatccaaacataaatcaattca 47021997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 37886905 - 37886854
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaaca 346  Q
    |||||| ||| || ||| |||||||||||||||| |||||||||||||||||    
T  37886905 tttgataattatatatttaaaatcaattttgattcaaactatccaaacaaca 37886854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 352
Target Start/End: Original strand, 39977544 - 39977583
Alignment:
Q  313 aaaatcaattttgatttaaactatccaaacaacatcaact 352  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  39977544 aaaatcaattttaatttaaagtatccaaacaacatcaact 39977583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 386597 - 386560
Alignment:
Q  313 aaaatcaattttgatttaaactatccaaacaacatcaa 350  Q
    |||||||||||||||| || ||||||||||||||||||    
T  386597 aaaatcaattttgattcaatctatccaaacaacatcaa 386560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 26826952 - 26826993
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  26826952 tacattcaaaagcaattttgataaaaactatccaaacaacat 26826993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 41065340 - 41065381
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  41065340 tacattcaaaagcaattttgatcaaaactatccaaacaacat 41065381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 43631828 - 43631771
Alignment:
Q  297 tgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactca 354  Q
    |||| ||| |||||||| |||||||||||||| ||  ||||||||||| |||||||||    
T  43631828 tgataattatacattcacaatcaattttgattcaatatatccaaacaatatcaactca 43631771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 368
Target Start/End: Original strand, 12964412 - 12964483
Alignment:
Q  294 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactactttt 368  Q
    |||||||||||  |||||||||||   | |||| | |||||||||||||||||| ||||||||| || |||||||    
T  12964412 gtttgatcattacacattcaaaat---tgttgactcaaactatccaaacaacattaactcataataattactttt 12964483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 397
Target Start/End: Original strand, 42740384 - 42740468
Alignment:
Q  313 aaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 397  Q
    |||||||||||||||  | ||||||||||||| |||||| ||||| ||  ||||||||  |||| |||| ||| ||||| |||||    
T  42740384 aaaatcaattttgatacatactatccaaacaatatcaacacataagaatcacttttaagtaagtatatctaaacataaatcaatt 42740468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 42752326 - 42752274
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    |||||| ||| | |||||||||||||||||||| |||  ||||||||||||||    
T  42752326 tttgataattatgcattcaaaatcaattttgatctaagttatccaaacaacat 42752274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 295 - 390
Target Start/End: Original strand, 13739159 - 13739254
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| ||||    
T  13739159 tttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaacaagtgtatccaaacataa 13739254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 295 - 390
Target Start/End: Original strand, 13744659 - 13744754
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| ||||    
T  13744659 tttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaacaagtgtatccaaacataa 13744754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 29409399 - 29409295
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    |||| ||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||| ||  | ||||||| || |||||||||| ||||| ||    
T  29409399 tttggtcattatacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcatttttaaaaaactgtatccaaacataaatca 29409300  T
Q  395 attca 399  Q
    |||||    
T  29409299 attca 29409295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 31132432 - 31132512
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||| ||  ||||||||| ||||||||||||| ||||    
T  31132432 ttcaaaatcaattttgattcaaactatccaaacaacatcaacccataagaatcacttttaaataagtgtatccaaaaataa 31132512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 399
Target Start/End: Complemental strand, 16442499 - 16442394
Alignment:
Q  294 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 393  Q
    ||||| |||||  |||||||||||||||||| ||| ||| ||||||||||| |||||||||||  ||  ||||||||| ||||||||||||| ||||| |    
T  16442499 gtttggtcattacacattcaaaatcaattttcattcaaattatccaaacaatatcaactcatatgaatcacttttaaataagtgtatccaaacataaatc 16442400  T
Q  394 aattca 399  Q
    ||||||    
T  16442399 aattca 16442394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 16548104 - 16548196
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    |||||||||||||||||||||| |||||||||||||||||||||| || |  ||  ||||||||  ||||||||||||| ||||| |||||||    
T  16548104 acattcaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcacttttaataaagtgtatccaaacataaatcaattca 16548196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 400
Target Start/End: Complemental strand, 33899141 - 33899048
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcat 400  Q
    ||||||||||||||||||||||||||| |||||||||  || ||||||||| ||  ||||||| |  |||||||||||| ||||| ||||||||    
T  33899141 acattcaaaatcaattttgatttaaaccatccaaacattattaactcataagaatcacttttacattagtgtatccaaacataaatcaattcat 33899048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 390
Target Start/End: Complemental strand, 6208198 - 6208115
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    ||||||||||| |||||||||| |||||||| ||||||||||||||||||| ||  |||||||   ||||||||||||| ||||    
T  6208198 acattcaaaattaattttgattcaaactatctaaacaacatcaactcataagaatcacttttagtaaagtgtatccaaacataa 6208115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 399
Target Start/End: Original strand, 10826062 - 10826148
Alignment:
Q  313 aaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| |||||||||| ||||||||||||||| |||||||||||| ||  ||||||||| |||| |||||||| | ||| |||||||    
T  10826062 aaaattaattttgattcaaactatccaaacaaaatcaactcataagaatcacttttaaataagtatatccaaacaaaaatcaattca 10826148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 17830134 - 17830090
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaac 351  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  17830134 acattcaaaatcaattttgattcaaactatccaaacaacatcaac 17830090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 398
Target Start/End: Original strand, 699518 - 699613
Alignment:
Q  302 attttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattc 398  Q
    |||||| |||||||||| ||||||||| ||||||||| |||||||| |||| |||| || ||||||||   ||||| ||||||| ||||| ||||||    
T  699518 attttatattcaaaatcgattttgattcaaactatcc-aacaacattaacttataagaattacttttagtaaagtgcatccaaacataaatcaattc 699613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 31745527 - 31745486
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  31745527 tacattcaaaagcaattttgatcaaaactatccaaacaacat 31745486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 2935735 - 2935695
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    |||||||||| |||||||||| |||| ||||||||||||||    
T  2935735 acattcaaaaacaattttgatctaaattatccaaacaacat 2935695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 295 - 390
Target Start/End: Complemental strand, 43781666 - 43781571
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| ||||    
T  43781666 tttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaacaagtgtatccaaacataa 43781571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 294 - 399
Target Start/End: Original strand, 51922877 - 51922982
Alignment:
Q  294 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 393  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||   ||||||||||||| ||||| |    
T  51922877 gtttggtcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaattacttttagtaaagtgtatccaaacataaatc 51922976  T
Q  394 aattca 399  Q
    ||||||    
T  51922977 aattca 51922982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 294 - 399
Target Start/End: Complemental strand, 13183199 - 13183094
Alignment:
Q  294 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 393  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||| ||  | ||||||| ||||||||||||| ||||| |    
T  13183199 gtttggtcattttacattcaaaatcaattttgatttaaattatccaaaaaacatcaacttataaaaatcatttttaaataagtgtatccaaacataaatc 13183100  T
Q  394 aattca 399  Q
    ||||||    
T  13183099 aattca 13183094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 390
Target Start/End: Original strand, 30842075 - 30842165
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    ||||||||||||||||||||||||||||| ||||||||||||  | |||||||||||| ||  ||||| ||||||||||||||||| ||||    
T  30842075 tcattttacattcaaaatcaattttgattcaaactatccaaatgaaatcaactcataagaatcactttcaaacaagtgtatccaaacataa 30842165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 390
Target Start/End: Complemental strand, 48407840 - 48407750
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    ||||||||||||||||||||||||||||| ||||||||||||  | |||||||||||| ||  ||||| ||||||||||||||||| ||||    
T  48407840 tcattttacattcaaaatcaattttgattcaaactatccaaatgaaatcaactcataagaatcactttcaaacaagtgtatccaaacataa 48407750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 294 - 399
Target Start/End: Complemental strand, 26651997 - 26651892
Alignment:
Q  294 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 393  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||||||| |||||| |||||||| || ||||||||   ||||||||| ||| ||||| |    
T  26651997 gtttggtcattatacattcaaaatcaattttgattcaaactatccaaataacatcgactcataagaattacttttagtaaagtgtatctaaacataaatc 26651898  T
Q  394 aattca 399  Q
    ||||||    
T  26651897 aattca 26651892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 29149455 - 29149351
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |||| ||  ||||||||   |||||||||||| ||||| ||    
T  29149455 tttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatca 29149356  T
Q  395 attca 399  Q
    |||||    
T  29149355 attca 29149351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 49136460 - 49136564
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    |||| ||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||||| ||  ||||||||   |||||||||||| ||||| ||    
T  49136460 tttggtcattgtacattcaaaatcaattttgattaaaattattcaaacaacatcaactcataagaatcacttttaagtgagtgtatccaaacataaatca 49136559  T
Q  395 attca 399  Q
    |||||    
T  49136560 attca 49136564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 9893653 - 9893711
Alignment:
Q  299 atcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9893653 atcattatacattcaaaatcaattttaatttaaactatccaaacaacatcaactcataa 9893711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 399
Target Start/End: Complemental strand, 48550576 - 48550471
Alignment:
Q  294 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 393  Q
    |||||||||||  ||||| |||||||||||||||| |||||||||||||||||||||||||||| ||  |||| ||   |||| |||||||| ||||| |    
T  48550576 gtttgatcattacacatttaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttctattaaagtttatccaaacataaatc 48550477  T
Q  394 aattca 399  Q
    ||||||    
T  48550476 aattca 48550471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 15603298 - 15603402
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    |||||||||| | ||||||||||||||||||| ||||| |||||||||||||||||||||||| ||  | |||||| ||||| |||| ||| | ||| ||    
T  15603298 tttgatcattgtgcattcaaaatcaattttgacttaaattatccaaacaacatcaactcataagaatcatttttaagcaagtatatctaaacacaaatca 15603397  T
Q  395 attca 399  Q
    |||||    
T  15603398 attca 15603402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 16566255 - 16566347
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    |||||||||||||||||||||| |||||||||||||||||||||| || |  ||  ||||||||  ||||||||||||| ||||| |||||||    
T  16566255 acattcaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcacttttaataaagtgtatccaaacataaatcaattca 16566347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 39636735 - 39636827
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| |||||||||||||||| | |||||||||||||||||||||| ||| ||  ||||||||  ||||||||||||| ||||| |||||||    
T  39636735 acatttaaaatcaattttgattcatactatccaaacaacatcaactcgtaagaatcacttttaagtaagtgtatccaaacataaatcaattca 39636827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 399
Target Start/End: Complemental strand, 6138749 - 6138664
Alignment:
Q  314 aaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||||||||| ||| |||||||||||||||||||||||||||  ||  | ||||||| ||||||||||||| ||||| |||||||    
T  6138749 aaatcaattttcattcaaactatccaaacaacatcaactcatatgaatcatttttaaataagtgtatccaaacataaatcaattca 6138664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 14072453 - 14072501
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcat 355  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14072453 acattcaaaatcaattttgattcaaactatccaaacaacatcaactcat 14072501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 19592379 - 19592275
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    |||| ||||| ||||||||||||||||||| ||| |||||||||||||||| |||| || ||| ||  |||||||   ||||||||||||| ||||| ||    
T  19592379 tttggtcattgtacattcaaaatcaattttcattcaaactatccaaacaacgtcaattcgtaagaatcacttttagtaaagtgtatccaaacataaatca 19592280  T
Q  395 attca 399  Q
    |||||    
T  19592279 attca 19592275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 399
Target Start/End: Complemental strand, 46830205 - 46830113
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| ||||||||||||||| || | |||||||||||||||||||||||| ||  | ||||||  ||||||||||||| ||||| |||||||    
T  46830205 acatttaaaatcaattttgatgtagaatatccaaacaacatcaactcataagaatcaattttaagaaagtgtatccaaacataaatcaattca 46830113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 300 - 399
Target Start/End: Complemental strand, 2175290 - 2175191
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| ||| ||||||||||||||| ||| |||||||||||||||||||||| ||| | ||  |||||||| | |||| ||||||| ||||| |||||||    
T  2175290 tcattgtacgttcaaaatcaattttaattcaaactatccaaacaacatcaacccatcaaaatcacttttaagcgagtgcatccaaacataaatcaattca 2175191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 300 - 399
Target Start/End: Original strand, 6505144 - 6505243
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| || |||||||||||||||||| ||||||||||||||||||||||| |||| | ||  ||||||| |  |||||||| ||| ||||| |||||||    
T  6505144 tcattatatattcaaaatcaattttgacttaaactatccaaacaacatcaagtcatgataatcacttttatatgagtgtatctaaacataaatcaattca 6505243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 357
Target Start/End: Complemental strand, 9889477 - 9889420
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||    
T  9889477 tcattatacattcaaaatcaattttaattcaaactatccaaacaacatctactcataa 9889420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 28986972 - 28987021
Alignment:
Q  308 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  28986972 catttaaaatcaattttgattcaaactatccaaacaacatcaactcataa 28987021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 32238194 - 32238145
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcata 356  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  32238194 acattcaaaatcagttttgattcaaactatccaaacaacatcaactcata 32238145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 399
Target Start/End: Complemental strand, 42945047 - 42944942
Alignment:
Q  294 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 393  Q
    ||||| ||||| |||||| |||||||||||||||  | |||||||||||||||||||| ||||| ||  ||||||||  |||| |||| ||| ||||| |    
T  42945047 gtttggtcattatacatttaaaatcaattttgatacatactatccaaacaacatcaacacataagaatcacttttaagtaagtatatctaaacataaatc 42944948  T
Q  394 aattca 399  Q
    ||||||    
T  42944947 aattca 42944942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 400
Target Start/End: Complemental strand, 56241983 - 56241878
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    |||| ||||| |||||||||||||||||||||||||||  ||| |||||  |||||||||||| ||  ||||||| |  | |||||||||| ||||| ||    
T  56241983 tttggtcattatacattcaaaatcaattttgatttaaatcatctaaacattatcaactcataagaatcacttttacattaatgtatccaaacataaatca 56241884  T
Q  395 attcat 400  Q
    ||||||    
T  56241883 attcat 56241878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 400
Target Start/End: Complemental strand, 14564289 - 14564189
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| || |||||||||||||||||||| || ||||||||||||||| ||||||||| ||  ||||||||   |  ||||||||| ||||| |||||||    
T  14564289 tcattatatattcaaaatcaattttgattcaatctatccaaacaacattaactcataagaatcacttttaactgaaggtatccaaacataaatcaattca 14564190  T
Q  400 t 400  Q
    |    
T  14564189 t 14564189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 397
Target Start/End: Original strand, 38693996 - 38694088
Alignment:
Q  305 ttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 397  Q
    ||||||||||||| |||||||||||||| ||| ||| ||| |||||| ||||| ||  |||||||| | |||||||||||| |||||| ||||    
T  38693996 ttacattcaaaattaattttgatttaaattattcaagcaagatcaacccataagaatcacttttaagcgagtgtatccaaacataaactaatt 38694088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 54152995 - 54153043
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcat 355  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  54152995 acattcaaaatcaattttgattcaaactattcaaacaacatcaactcat 54153043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 391
Target Start/End: Complemental strand, 43772253 - 43772175
Alignment:
Q  313 aaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaa 391  Q
    |||||||||||||||| | | |||||||||||||||||||| ||| ||  |||| |||| ||||||||||||| |||||    
T  43772253 aaaatcaattttgattcatattatccaaacaacatcaactcgtaagaatcacttctaaaaaagtgtatccaaacataaa 43772175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 397
Target Start/End: Complemental strand, 54735786 - 54735696
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 397  Q
    |||||||| ||||||||||||||||| ||  |||||||||||||||||||| ||  ||||||||  |  ||| |||||| |||||||||||    
T  54735786 acattcaagatcaattttgatttaaaatactcaaacaacatcaactcataagaatcacttttaagtatatgtttccaaacataaaccaatt 54735696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 28987733 - 28987668
Alignment:
Q  6 atgaggaagtgtgtagaaacagtgaagaaggttgtggaaaaatggaaggaatatgcagaaactgag 71  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||||||| | |  |||||||||||    
T  28987733 atgaggaagggtgtagaaacagtgaagaaagttgtggagaaatggaagggaaacacagaaactgag 28987668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 399
Target Start/End: Original strand, 48908228 - 48908315
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||||||||||||||||| || |||||||||||||||||||| |||  || ||||||||| | || ||||||||| || ||||||||||    
T  48908228 ttcaaaatcaattttgattcaagctatccaaacaacatcaacttatatgaattacttttaagcgag-gtatccaaacat-aaccaattca 48908315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 399
Target Start/End: Complemental strand, 4954187 - 4954095
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| ||||| |||||||||| || ||||||||||||||||||||||||| ||  ||||||||   || ||| ||||| ||||| |||||||    
T  4954187 acatttaaaattaattttgattcaacctatccaaacaacatcaactcataagaatcacttttaagtgagggtacccaaacataaatcaattca 4954095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 390
Target Start/End: Complemental strand, 26426257 - 26426167
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    ||||| |||||||| |||||||||||||| ||  ||||||||||| ||||||||| || ||  ||||||||  ||| ||||||||| ||||    
T  26426257 tcattatacattcacaatcaattttgattcaatgtatccaaacaatatcaactcaaaagaatcacttttaattaagcgtatccaaacataa 26426167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 397
Target Start/End: Complemental strand, 30887289 - 30887199
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 397  Q
    |||||||||||||||||||||  |||| ||||||||| ||| ||||||||| ||  ||||||| |   ||||||||||| ||||| |||||    
T  30887289 acattcaaaatcaattttgatacaaaccatccaaacatcattaactcataagaatcacttttatattggtgtatccaaacataaatcaatt 30887199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 45106357 - 45106398
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  45106357 tacattcaaaatcaattttgataaaaactatccaaacaacat 45106398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 54655200 - 54655245
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaact 352  Q
    |||| ||||||||||||| ||||||| |||||||||||||||||||    
T  54655200 acatccaaaatcaattttaatttaaagtatccaaacaacatcaact 54655245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 14054801 - 14054893
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    |||| ||||||||||||| ||||||| ||| |||||||||||||||   || ||  ||||||| | |||| |||||||| ||||| |||||||    
T  14054801 acatccaaaatcaattttaatttaaagtattcaaacaacatcaacttgaaataatcacttttatataagtttatccaaacataaatcaattca 14054893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 54150464 - 54150568
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    |||||| ||| |||||  |||| ||||||||||||||  ||||||||||||| ||||| |||| ||  | ||||||  ||||||||||||| | ||| ||    
T  54150464 tttgataattatacatctaaaagcaattttgatttaatgtatccaaacaacaccaacttataagaatcatttttaacgaagtgtatccaaacaaaaatca 54150563  T
Q  395 attca 399  Q
    |||||    
T  54150564 attca 54150568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 55638921 - 55638873
Alignment:
Q  309 attcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    |||||||||||||||||||| | | ||||||||||| ||||||||||||    
T  55638921 attcaaaatcaattttgattcatattatccaaacaatatcaactcataa 55638873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 5025484 - 5025519
Alignment:
Q  312 caaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||||||||| ||||||||||||||||||    
T  5025484 caaaatcaattttgattcaaactatccaaacaacat 5025519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 399
Target Start/End: Original strand, 13167476 - 13167567
Alignment:
Q  308 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    |||| |||| ||||||||||| || ||||||||||| ||| ||  ||||| ||  |||||||||   ||||||||||||||||| |||||||    
T  13167476 catttaaaagcaattttgattcaatctatccaaacatcattaatacataagaatcacttttaaatgggtgtatccaaatataaatcaattca 13167567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 370
Target Start/End: Complemental strand, 31520506 - 31520443
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaa 370  Q
    ||||| |||||||||||| ||| |||||| ||||| ||||||||||||||| ||  ||||||||    
T  31520506 acatttaaaatcaatttttattcaaactacccaaaaaacatcaactcataaaaatcacttttaa 31520443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 391
Target Start/End: Original strand, 49519686 - 49519764
Alignment:
Q  313 aaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaa 391  Q
    |||||||||||| ||  | ||||||||||||| ||||| |||||| ||  | |||||| |||||||||||||| |||||    
T  49519686 aaaatcaattttaatacatactatccaaacaatatcaattcataagaatcatttttaagcaagtgtatccaaacataaa 49519764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 16202655 - 16202614
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  16202655 tacattcaaaagcaattttgatcaaaactatccaaacaacat 16202614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 22605879 - 22605838
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  22605879 tacattcaaaagcaattttgataaaaactatccaaacaacat 22605838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 28963380 - 28963339
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  28963380 tacattcaaaagcaattttgataaaaactatccaaacaacat 28963339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 30417917 - 30417876
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  30417917 tacattcaaaagcaattttgataaaaactatccaaacaacat 30417876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 39733396 - 39733437
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    |||||||||||| |||||||||  ||||||||||||||||||    
T  39733396 tacattcaaaattaattttgatcaaaactatccaaacaacat 39733437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 397
Target Start/End: Original strand, 48550172 - 48550257
Alignment:
Q  312 caaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 397  Q
    ||||||||||||| ||  || |||||||||||| ||||| |||||  || ||||||||||  |||| ||||||| ||||| |||||    
T  48550172 caaaatcaattttaatccaatctatccaaacaatatcaattcatatgaattacttttaaatgagtgcatccaaacataaatcaatt 48550257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 50523387 - 50523350
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  50523387 ttcaaaatcaattttgatcaaaactatccaaacaacat 50523350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 15619567 - 15619610
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaac 351  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||    
T  15619567 acattcaagatca-ttttgattcaaactatccaaacaacatcaac 15619610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 8402 - 8506
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||  | ||||||| ||||||||||||| ||||| ||    
T  8402 tttggtcattgtacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataaaaatcatttttaaaaaagtgtatccaaacataaatca 8501  T
Q  395 attca 399  Q
    |||||    
T  8502 attca 8506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 295 - 397
Target Start/End: Original strand, 53179802 - 53179903
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||  ||||||||| ||||||||||||| ||||| ||    
T  53179802 tttggtcattgtacattcaaaatcaattttgatttaaactatccaaacaa-atcaactcataaaaatcacttttaaaaaagtgtatccaaacataaatca 53179900  T
Q  395 att 397  Q
    |||    
T  53179901 att 53179903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 307 - 397
Target Start/End: Original strand, 3348208 - 3348298
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 397  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||| || |||||||||  ||||||||||||| ||||| |||||    
T  3348208 acattcaaaatcaattttgatataaaatatccaaacaacatcaactcataagaattacttttaaggaagtgtatccaaacataaatcaatt 3348298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 294 - 400
Target Start/End: Original strand, 10334090 - 10334196
Alignment:
Q  294 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 393  Q
    ||||| ||||| || |||||||||||||||||||| |||||||||||||||| ||||||||||| || ||||||||   ||||||||||||| ||||| |    
T  10334090 gtttggtcattataaattcaaaatcaattttgattcaaactatccaaacaacgtcaactcataagaattacttttagtaaagtgtatccaaacataaatc 10334189  T
Q  394 aattcat 400  Q
    |||||||    
T  10334190 aattcat 10334196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 300 - 390
Target Start/End: Original strand, 42318288 - 42318378
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    ||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||| ||  ||||| ||||||||||||||||| ||||    
T  42318288 tcattttacattcaaaatcaattttgattcaaactatccaaacgaaatcaactcataagaatcactttcaaacaagtgtatccaaacataa 42318378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 390
Target Start/End: Complemental strand, 38125584 - 38125494
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||||||||||||||||| |||||||||| ||||||||||||| | |||||||||||| ||  ||||| ||||||||||||||||| ||||    
T  38125584 tcattttacattcaaaattaattttgattcaaactatccaaacgaaatcaactcataagaatcactttcaaacaagtgtatccaaacataa 38125494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 20813111 - 20813203
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||  |||||| || |||| |||||||| | ||| |||||||    
T  20813111 acattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttgaataagtatatccaaacaaaaatcaattca 20813203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 296 - 399
Target Start/End: Complemental strand, 31619034 - 31618931
Alignment:
Q  296 ttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaa 395  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||| ||  |||| |||   || ||||||||| ||||| |||    
T  31619034 ttgatcattatacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttctaagtgagagtatccaaacataaatcaa 31618935  T
Q  396 ttca 399  Q
    ||||    
T  31618934 ttca 31618931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 307 - 397
Target Start/End: Complemental strand, 10853403 - 10853313
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 397  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||  ||||||||   ||| |||||||| ||||| |||||    
T  10853403 acattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaagtgagtatatccaaacataaatcaatt 10853313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 399
Target Start/End: Complemental strand, 38172456 - 38172351
Alignment:
Q  294 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 393  Q
    ||||| |||||  |||||||||||||||||| ||| |||||||||||||||||||||||||||| ||  |||| ||   ||||||||||||| ||||| |    
T  38172456 gtttggtcattacacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataagaatcacttctattaaagtgtatccaaacataaatc 38172357  T
Q  394 aattca 399  Q
    ||||||    
T  38172356 aattca 38172351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 307 - 400
Target Start/End: Original strand, 44224727 - 44224820
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcat 400  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||||||| ||  ||||||||   |||||||||||| ||||| ||||||||    
T  44224727 acattcaaaatcaattttgactaaaattatccaaacaacatcaactcataagaatcacttttaagtgagtgtatccaaacataaatcaattcat 44224820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 26519617 - 26519721
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    |||| |||||||||||| ||||||||||||| || ||||||||||||||| ||||||| |||| ||  ||||||||   |||||||||||| ||||| ||    
T  26519617 tttggtcattttacatttaaaatcaattttgtttcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatca 26519716  T
Q  395 attca 399  Q
    |||||    
T  26519717 attca 26519721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 353
Target Start/End: Complemental strand, 16246243 - 16246184
Alignment:
Q  294 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactc 353  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||    
T  16246243 gtttgatcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaactc 16246184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 357
Target Start/End: Complemental strand, 48189584 - 48189527
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  48189584 tcattatacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataa 48189527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 308 - 399
Target Start/End: Complemental strand, 15511510 - 15511420
Alignment:
Q  308 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||||||||||||||| ||| ||||||||||||||| |||||||||||| ||  |||||| || ||| ||||||||| ||||| |||||||    
T  15511510 cattcaaaatcaatttttattcaaactatccaaacaatatcaactcataaaaatcactttt-aataagcgtatccaaacataaatcaattca 15511420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 300 - 351
Target Start/End: Original strand, 23496282 - 23496333
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaac 351  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  23496282 tcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaac 23496333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 307 - 357
Target Start/End: Original strand, 35425299 - 35425349
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  35425299 acattcaaaatcaattttgattcaaactatccaaacaatatcaactcataa 35425349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 308 - 390
Target Start/End: Original strand, 53074869 - 53074951
Alignment:
Q  308 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||| |||||||||||||||| ||||||||||||||||||| |||||||| ||  ||||||||   |||||||||||| ||||    
T  53074869 catttaaaatcaattttgattcaaactatccaaacaacatccactcataagaatcacttttaagtgagtgtatccaaacataa 53074951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 399
Target Start/End: Complemental strand, 23207199 - 23207112
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    |||||||| |||||||||| |||||||| ||||||||||||||||||| | | |||| |||| ||||||||||||| ||||| |||||||    
T  23207199 ttcaaaattaattttgattcaaactatc-aaacaacatcaactcataaaatc-acttgtaaaaaagtgtatccaaacataaatcaattca 23207112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 400
Target Start/End: Original strand, 35930703 - 35930796
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcat 400  Q
    ||||||||||||||||||||||||||| |||||||||  |||||||||||| ||  |||| || |  |||||||||||  ||||| ||||||||    
T  35930703 acattcaaaatcaattttgatttaaaccatccaaacattatcaactcataagaatgacttatacattagtgtatccaagcataaatcaattcat 35930796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 390
Target Start/End: Complemental strand, 8424861 - 8424782
Alignment:
Q  311 tcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||| ||  |||| ||   ||||||||||||| ||||    
T  8424861 tcaaaatcaattttgattcaaactattcaaacaacatcaactcataagaatcacttctattgaagtgtatccaaacataa 8424782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 357
Target Start/End: Complemental strand, 30811667 - 30811617
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    |||||||||||||||||||||| ||||||||||||||| ||||| ||||||    
T  30811667 acattcaaaatcaattttgattcaaactatccaaacaatatcaagtcataa 30811617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 399
Target Start/End: Original strand, 31084175 - 31084264
Alignment:
Q  309 attcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    |||||||||||||| ||||| |||||||||||| || ||||| |||||| ||  |||||| || ||||||||||||| ||||| |||||||    
T  31084175 attcaaaatcaattatgattcaaactatccaaataatatcaagtcataagaatcactttt-aagaagtgtatccaaacataaatcaattca 31084264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 357
Target Start/End: Complemental strand, 44939550 - 44939500
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||||||||    
T  44939550 acattcaaaattaattttgattaaaactattcaaacaacatcaactcataa 44939500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 38340771 - 38340862
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| |||||||||||| ||| |||||||||||||||| |||||| |||| || ||||||| || |||  |||||||| ||||| |||||||    
T  38340771 acatttaaaatcaatttttattcaaactatccaaacaacgtcaacttataaaaattactttt-aataagcatatccaaacataaatcaattca 38340862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 347
Target Start/End: Original strand, 50664712 - 50664764
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||  |||||||||||||||||| |||||||||||| |||||||||    
T  50664712 tttgatcattacacattcaaaatcaattttaatttaaactatctaaacaacat 50664764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 399
Target Start/End: Complemental strand, 52966945 - 52966853
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| |||||||||||||||| || ||||| ||||||||||||||||||| ||  ||||||||   || ||| ||||| ||||| |||||||    
T  52966945 acatttaaaatcaattttgattcaacctatctaaacaacatcaactcataagaatcacttttaagtgagggtacccaaacataaatcaattca 52966853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 370
Target Start/End: Original strand, 22736946 - 22737009
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaa 370  Q
    |||||||||||||||||||||| |||| |||| |||||||| ||||||||| ||  ||||||||    
T  22736946 acattcaaaatcaattttgattcaaaccatcccaacaacattaactcataataatcacttttaa 22737009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 385
Target Start/End: Original strand, 21224943 - 21225033
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaa 385  Q
    |||| ||||| |||| ||| |||||||||||||| |||||||| |||| |||||||||| ||| ||   |||||||  |||||||||||||    
T  21224943 tttggtcattatacactcataatcaattttgattcaaactatcaaaacgacatcaactcgtaagaatcgcttttaagaaagtgtatccaaa 21225033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 30811288 - 30811329
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  30811288 tacattcaaaatcaattttgatcaaaactatccaaacaacat 30811329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 55087630 - 55087593
Alignment:
Q  315 aatcaattttgatttaaactatccaaacaacatcaact 352  Q
    |||||||||||||| |||||||||||||||||||||||    
T  55087630 aatcaattttgattcaaactatccaaacaacatcaact 55087593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 397
Target Start/End: Original strand, 32357479 - 32357566
Alignment:
Q  310 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 397  Q
    ||||||||||||||| ||| ||| || ||||||||||||||| ||||| ||  |||||||||  ||||| | |||| ||||| |||||    
T  32357479 ttcaaaatcaattttaattcaaagtacccaaacaacatcaacacataagaatcacttttaaatgagtgttttcaaacataaatcaatt 32357566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 357
Target Start/End: Original strand, 14959684 - 14959734
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    |||||||||||||| ||||||| |||  ||| |||||||||||||||||||    
T  14959684 acattcaaaatcaagtttgattcaaatcatctaaacaacatcaactcataa 14959734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 33329478 - 33329436
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacatc 348  Q
    ||||||||||| ||||||||||  |||||||||||||||||||    
T  33329478 tacattcaaaagcaattttgatcgaaactatccaaacaacatc 33329436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 397
Target Start/End: Original strand, 37117556 - 37117658
Alignment:
Q  295 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 394  Q
    |||| |||||||||||| ||||| |||||| ||||||||||| |||| || || || | |||| ||| | |||||||  ||| ||| |||||||||| ||    
T  37117556 tttgctcattttacatttaaaattaattttaatttaaactattcaaataatattaaattataataaccatttttaaatgagtatattcaaatataaatca 37117655  T
Q  395 att 397  Q
    |||    
T  37117656 att 37117658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 347
Target Start/End: Complemental strand, 37698519 - 37698485
Alignment:
Q  313 aaaatcaattttgatttaaactatccaaacaacat 347  Q
    |||||||||||||||| ||||||||||||||||||    
T  37698519 aaaatcaattttgattcaaactatccaaacaacat 37698485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 44610352 - 44610311
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacatc 348  Q
    ||||||||||||||||||||| | |||||||||||||||||||    
T  44610352 tacattcaaaatcaattttga-tcaaactatccaaacaacatc 44610311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 11264277 - 11264318
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  11264277 tacattcaaaagcaattttgataaaaactatccaaacaacat 11264318  T

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Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 28884258 - 28884299
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    |||||||||||  |||||||||| ||||||||||||||||||    
T  28884258 tacattcaaaaataattttgattaaaactatccaaacaacat 28884299  T

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Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 39252061 - 39252102
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  39252061 tacattcaaaagcaattttgataaaaactatccaaacaacat 39252102  T

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Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 42074914 - 42074955
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||||||||||||||   |||||||||||||||||    
T  42074914 tacattcaaaatcaattttgataagaactatccaaacaacat 42074955  T

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Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 45423905 - 45423864
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||| ||||||||||||||||| || |||||||||||||||    
T  45423905 tacatccaaaatcaattttgattcaagctatccaaacaacat 45423864  T

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Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 48254015 - 48253974
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  48254015 tacattcaaaagcaattttgataaaaactatccaaacaacat 48253974  T

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Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 51230284 - 51230325
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||||||| ||||||  ||||||||||||||||||    
T  51230284 tacattcaaaatcaaatttgataaaaactatccaaacaacat 51230325  T

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Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 53078323 - 53078363
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    |||| ||||||||||||||||| ||||| ||||||||||||    
T  53078323 acatccaaaatcaattttgattcaaactgtccaaacaacat 53078363  T

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Target: scaffold0983 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 312 - 399
Target Start/End: Complemental strand, 2399 - 2312
Alignment:
Q  312 caaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||||||||||||||| |||||||| ||||||| ||||||  ||| ||| |||||||||||||||| |||||| ||||| |||||||    
T  2399 caaaatcaattttgattcaaactatctaaacaacgtcaacttgtaaaaaccacttttaaacaagtgtgtccaaacataaatcaattca 2312  T

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Target: scaffold0007 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 390
Target Start/End: Complemental strand, 29258 - 29175
Alignment:
Q  307 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 390  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||  |||| ||   ||||||||||||| ||||    
T  29258 acattcaaaatcaattttgattcaaactatccaaacaacatcaattcataagaataacttctattaaagtgtatccaaacataa 29175  T

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Target: scaffold0381 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 9069 - 9126
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 357  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||    
T  9069 tcattatacattcaaaatcaattttaattcaaactatccaaacaacatctactcataa 9126  T

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Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 400
Target Start/End: Original strand, 253086 - 253186
Alignment:
Q  300 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 399  Q
    ||||| || |||||||||||||||||||| || ||||||||||||||| ||||||||| ||  ||||||||   |  ||||||||| ||||| |||||||    
T  253086 tcattatatattcaaaatcaattttgattcaatctatccaaacaacattaactcataagaatcacttttaactgaaggtatccaaacataaatcaattca 253185  T
Q  400 t 400  Q
    |    
T  253186 t 253186  T

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Target: scaffold0217 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 400
Target Start/End: Complemental strand, 2161 - 2070
Alignment:
Q  309 attcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcat 400  Q
    |||||||||||||||||| |||||||||||||||||||||||  ||| | ||  ||||||| |  |||| ||||||| ||||| ||||||||    
T  2161 attcaaaatcaattttgacttaaactatccaaacaacatcaagccatgataatcacttttatatgagtgcatccaaacataaatcaattcat 2070  T

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Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 46727 - 46768
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||| |||||||||||||||||| |||||||||||||||||    
T  46727 tacatccaaaatcaattttgatttgaactatccaaacaacat 46768  T

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Target: scaffold0394 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 5967 - 5918
Alignment:
Q  307 acattcaaaatcaattttgatt-----taaactatccaaacaacatcaac 351  Q
    ||||||||||||||||||||||     |||||||||||||||||||||||    
T  5967 acattcaaaatcaattttgattcaaattaaactatccaaacaacatcaac 5918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 9295 - 9254
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    |||||| |||||||||||||||  ||||||||||||||||||    
T  9295 tacatttaaaatcaattttgatcaaaactatccaaacaacat 9254  T

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Target: scaffold0097 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 32582 - 32541
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  32582 tacattcaaaagcaattttgataaaaactatccaaacaacat 32541  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 301786 - 301745
Alignment:
Q  306 tacattcaaaatcaattttgatttaaactatccaaacaacat 347  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  301786 tacattcaaaaacaattttgatcaaaactatccaaacaacat 301745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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