View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20312_low_14 (Length: 401)
Name: NF20312_low_14
Description: NF20312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20312_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 30528706 - 30528493
Alignment:
| Q |
1 |
agacaactttgttggaaaaaataatgaaatgaagtgaagaatgaggatgaacagtttctgttacaatgttttgaattcttaaatcactctcttttggaaa |
100 |
Q |
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| T |
30528706 |
agacaactttgttggaaaaaataatgaaatgaagtgaagaatgaggatgaacagtttctgttacaatgttttgaattcttaaatcactctcttttggaaa |
30528607 |
T |
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| Q |
101 |
ctttcactcattctttatggtttgaagttgatcaggatctgttttacttgtgtcggttttgagtttcacaaccatgcatataggtatgcaaaatgtaata |
200 |
Q |
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| T |
30528606 |
ctttcactcattctttatggtttgaagttgatcaggatctgttttacttgtgtcggttttgagtttcacaaccatgcatataggtatgcaaaatgtaata |
30528507 |
T |
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| Q |
201 |
atctaaagcttatg |
214 |
Q |
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|||||||||||||| |
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| T |
30528506 |
atctaaagcttatg |
30528493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 287 - 385
Target Start/End: Complemental strand, 30528420 - 30528322
Alignment:
| Q |
287 |
ataggtggatccattcattttcttctatcatttatactaaaaatctgaactttttgttgggctgtttctgggttttctgtggaaaacttgggtgttata |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30528420 |
ataggtggatccattcattttcttctatcatttatactaaaaatttgaactttttgttgggctgtttctgggttttctgtggaaaacttgggtgttata |
30528322 |
T |
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