View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20312_low_18 (Length: 363)

Name: NF20312_low_18
Description: NF20312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20312_low_18
NF20312_low_18
[»] scaffold0024 (3 HSPs)
scaffold0024 (123-251)||(151195-151324)
scaffold0024 (1-92)||(151355-151446)
scaffold0024 (249-302)||(151125-151178)
[»] chr1 (1 HSPs)
chr1 (3-33)||(52097746-52097776)


Alignment Details
Target: scaffold0024 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 123 - 251
Target Start/End: Complemental strand, 151324 - 151195
Alignment:
Q  123 ttatgtatattaatatgttatcatcagaaacccagaatcaaatcaacgcnnnnnnnnnn-tgaaaataaggaaacaacaaataatcaaagaagcttagaa 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||    
T  151324 ttatgtatattaatatgttatcatcagaaacccagaatcaaatcaacgcaaaaaaaaaaatgaaaataaggaaacaacaaataatcaaagaagcttagaa 151225  T
Q  222 aacacttcacaatctaaacttacaaagcac 251  Q
    ||||||||||||||||||||||||||||||    
T  151224 aacacttcacaatctaaacttacaaagcac 151195  T

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Target: scaffold0024; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 151446 - 151355
Alignment:
Q  1 atttgagaaaataaaataattaaatgtaaccatacatatcaacatcatgtcaatgtcgatgctacatagatctgaactccaagaacatgctt 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  151446 atttgagaaaataaaataattaaatgtaaccatacatatcaacatcatgtcaatgtcgatgctacatagatctgtactccaagaacatgctt 151355  T

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Target: scaffold0024; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 151178 - 151125
Alignment:
Q  249 cacaacactaacacgcaggcacatgtaataatttaagtaaataaaataattgaa 302  Q
    |||||||||||||||| |||||  ||||||||||||||||||||||||||||||    
T  151178 cacaacactaacacgccggcacgggtaataatttaagtaaataaaataattgaa 151125  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 52097746 - 52097776
Alignment:
Q  3 ttgagaaaataaaataattaaatgtaaccat 33  Q
    |||||||||||||||||||||||||||||||    
T  52097746 ttgagaaaataaaataattaaatgtaaccat 52097776  T

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