View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20312_low_19 (Length: 359)

Name: NF20312_low_19
Description: NF20312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20312_low_19
NF20312_low_19
[»] chr3 (3 HSPs)
chr3 (142-359)||(47430624-47430841)
chr3 (22-82)||(47430902-47430962)
chr3 (22-82)||(50880030-50880090)
[»] chr7 (5 HSPs)
chr7 (22-82)||(9392519-9392579)
chr7 (22-70)||(43114812-43114861)
chr7 (30-78)||(37236169-37236217)
chr7 (22-62)||(29186999-29187039)
chr7 (22-57)||(12630905-12630940)
[»] chr5 (1 HSPs)
chr5 (22-82)||(13277954-13278013)
[»] chr4 (1 HSPs)
chr4 (22-62)||(18091925-18091965)
[»] chr1 (4 HSPs)
chr1 (30-78)||(17244560-17244608)
chr1 (22-62)||(52759708-52759748)
chr1 (173-322)||(12496535-12496681)
chr1 (173-244)||(22855811-22855883)
[»] chr8 (1 HSPs)
chr8 (22-62)||(9244400-9244440)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 142 - 359
Target Start/End: Complemental strand, 47430841 - 47430624
Alignment:
Q  142 cctctcatgttttttgggcagctctcactaactctccctcctctgtaaatctctctcacccgagttcactgaccaccgtcgtcccactcgtcggcctatg 241  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47430841 cctctcatgttttttgggcagctctcacaaactctccctcctctgtaaatctctctcacccgagttcactgaccactgtcgtcccactcgtcggcctatg 47430742  T
Q  242 gccatcgacgtggcatcccactgtatctatctccgaccccatacaactagatctggcctcaccaaatctcctcaccaccaccacgccgtttcaacaccac 341  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  47430741 gccatcgacgtggcatcccactgtatctatctccgatcccatacaactagatctggcctcaccaaatctcctctccaccaccacgtcgtttcaacaccac 47430642  T
Q  342 catggctctccgatccca 359  Q
    ||||||||||||||||||    
T  47430641 catggctctccgatccca 47430624  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 47430962 - 47430902
Alignment:
Q  22 acaccctccaatcactccaccataaccatcccaaaatcaaaagaagaaaaatccattattt 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47430962 acaccctccaatcactccaccataaccatcccaaaatcaaaagaagaaaaatccattattt 47430902  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 50880030 - 50880090
Alignment:
Q  22 acaccctccaatcactccaccataaccatcccaaaatcaaaagaagaaaaatccattattt 82  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50880030 acaccctccactcactccaccataaccatcccaaaatcaaaagaagaaaaatccattattt 50880090  T

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Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 9392579 - 9392519
Alignment:
Q  22 acaccctccaatcactccaccataaccatcccaaaatcaaaagaagaaaaatccattattt 82  Q
    |||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||    
T  9392579 acaccctccaatcacctcaccataacgatcccaaaatcaaaagaagaaaaatccattattt 9392519  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 43114861 - 43114812
Alignment:
Q  22 acaccctccaatcactcc-accataaccatcccaaaatcaaaagaagaaa 70  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43114861 acaccctccaatcactcccaccataaccatcccaaaatcaaaagaagaaa 43114812  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 37236169 - 37236217
Alignment:
Q  30 caatcactccaccataaccatcccaaaatcaaaagaagaaaaatccatt 78  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  37236169 caatctctccaccttaaccatcccaaaatcaaaagaagaaaaatccatt 37236217  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 29186999 - 29187039
Alignment:
Q  22 acaccctccaatcactccaccataaccatcccaaaatcaaa 62  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  29186999 acaccctccaatcactccatcataaccatcccaaaatcaaa 29187039  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 12630905 - 12630940
Alignment:
Q  22 acaccctccaatcactccaccataaccatcccaaaa 57  Q
    ||||||||||||||||||||||||||||||||||||    
T  12630905 acaccctccaatcactccaccataaccatcccaaaa 12630940  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 13278013 - 13277954
Alignment:
Q  22 acaccctccaatcactccaccataaccatcccaaaatcaaaagaagaaaaatccattattt 82  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  13278013 acaccctctaatcactccaccataaccatctcaaaatcaaaagaag-aaaatccattattt 13277954  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 18091925 - 18091965
Alignment:
Q  22 acaccctccaatcactccaccataaccatcccaaaatcaaa 62  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18091925 acaccctccaatcactccaccataaccatcccaaaatcaaa 18091965  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 17244560 - 17244608
Alignment:
Q  30 caatcactccaccataaccatcccaaaatcaaaagaagaaaaatccatt 78  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  17244560 caatctctccaccttaaccatcccaaaatcaaaagaagaaaaatccatt 17244608  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 52759708 - 52759748
Alignment:
Q  22 acaccctccaatcactccaccataaccatcccaaaatcaaa 62  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  52759708 acaccctccaatcactccaccataaccatcccaaaatcaaa 52759748  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 322
Target Start/End: Original strand, 12496535 - 12496681
Alignment:
Q  173 ctctccctcctctgtaaatctctctcacc-cgagttcactgaccaccgtcgtcccactcgtcggcctatggccatcgacgtggcatcccactgtatctat 271  Q
    |||||||| ||||| |||||||||||| | ||||||||| | |||||  ||||||||||| || || ||||||  || |||     ||||||||||||||    
T  12496535 ctctcccttctctgcaaatctctctcatctcgagttcaccggccaccaacgtcccactcgccgtccgatggccgccggcgt-----cccactgtatctat 12496629  T
Q  272 ctccgaccccatacaactagatctggcc-tcaccaaatctcctcaccaccac 322  Q
    ||| |||||||||| ||| |||  |||| || ||||||||||||||||||||    
T  12496630 ctctgaccccatactactcgatgcggccatcgccaaatctcctcaccaccac 12496681  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 22855883 - 22855811
Alignment:
Q  173 ctctccctcctctgtaaatctctctca-cccgagttcactgaccaccgtcgtcccactcgtcggcctatggcc 244  Q
    |||||||||||||| |||||||| ||| ||||||||||| |||||| | || ||||||||||| || ||||||    
T  22855883 ctctccctcctctgcaaatctctgtcatcccgagttcaccgaccactgacgccccactcgtcgtccgatggcc 22855811  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 9244400 - 9244440
Alignment:
Q  22 acaccctccaatcactccaccataaccatcccaaaatcaaa 62  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  9244400 acaccctccaatcactccatcataaccatcccaaaatcaaa 9244440  T

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