View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20312_low_24 (Length: 320)
Name: NF20312_low_24
Description: NF20312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20312_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 39464712 - 39465017
Alignment:
| Q |
1 |
agcgggaaaagggataaacactacatctgctttcttcattttgaagcacaggtcatgcacttactcggtttgagttaatgtttttctgaattgttgtttg |
100 |
Q |
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| T |
39464712 |
agcgggaaaagggataaacactacttctgctttcttcattttgaagcacaggacatgcacttactcggtttgagttgatgtttttctgaattgttgtttg |
39464811 |
T |
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| Q |
101 |
atatatctgttttttgatataggaacaggaatggatgaaacagtatcataataagaggaatctttgtgagtgatgtcatggctttgctggttgggttaag |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
39464812 |
atatatctgttttttgatataggaacaggaatagatgaaacagtatcataataagaggaatctttgtgagtgatgtcatggctttgctggttgggttggg |
39464911 |
T |
|
| Q |
201 |
gtgacaacttatgtggcatgaaagtgaggtgaaattgaaatgtttgtctttttattatgcaaannnnnnnggtgaacaaggatttgtaaaactgaattgt |
300 |
Q |
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| T |
39464912 |
gtgacaaattatgtggcatgaaagtgaggtgagattgaaatgtttgtctttttattatgcaaatttttttggtggacaaggatttgtaaaactgaattgt |
39465011 |
T |
|
| Q |
301 |
taatat |
306 |
Q |
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|||||| |
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| T |
39465012 |
taatat |
39465017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 39470935 - 39471049
Alignment:
| Q |
1 |
agcgggaaaagggataaacactacatctgctttcttcattttgaagcacaggtcatgcacttactcggtttgagttaatgtttttctgaattgttgtttg |
100 |
Q |
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| T |
39470935 |
agcgggaaaagggataaacaccacttccactttcttcatgttggagcacaagacatacacttactcagtgtgagttactgtttctctgaattgttctttg |
39471034 |
T |
|
| Q |
101 |
atatatctgtttttt |
115 |
Q |
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||||| ||||||||| |
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| T |
39471035 |
atatacctgtttttt |
39471049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 249
Target Start/End: Complemental strand, 39486213 - 39486128
Alignment:
| Q |
163 |
tttgtgagtgatgtcatggctttgctggttgggttaaggtgacaacttatgtggcatgaaagtgaggtgaaattgaaatgtttgtct |
249 |
Q |
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|||| ||||||||||||||||||||||| | | || | |||||||| |||||| ||||||||||||||| ||||||| |||||||| |
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| T |
39486213 |
tttgggagtgatgtcatggctttgctggctagtataggatgacaact-atgtggaatgaaagtgaggtgatattgaaaagtttgtct |
39486128 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 39450987 - 39450940
Alignment:
| Q |
5 |
ggaaaagggataaacactacatctgctttcttcattttgaagcacagg |
52 |
Q |
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| T |
39450987 |
ggaaaagggataaacaccacttctgctttcttcatcttgaagcacagg |
39450940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 39460239 - 39460140
Alignment:
| Q |
3 |
cgggaaaagggataaacactacatctgctttcttcattttgaagcacaggtcatgcacttactcggtttgagttaatgtttttctgaattgttgtttgat |
102 |
Q |
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| T |
39460239 |
cgggaaaagggataaacacaacttctgctttcttcatcttggagcacaggatatacccttactc--tgtaagttactgttttt-tgaattgttctttgat |
39460143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 39471097 - 39471142
Alignment:
| Q |
142 |
agtatcataataagaggaatctttgtgagtgatgtcatggctttgc |
187 |
Q |
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| T |
39471097 |
agtatcataataaaagaaacctttgtgagtgatgtcatggctttgc |
39471142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 39475495 - 39475459
Alignment:
| Q |
3 |
cgggaaaagggataaacactacatctgctttcttcat |
39 |
Q |
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||||||||||||||||||| || |||||||||||||| |
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| T |
39475495 |
cgggaaaagggataaacaccacttctgctttcttcat |
39475459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 14722315 - 14722250
Alignment:
| Q |
234 |
attgaaatgtttgtcttttt-attatgcaaannnnnnnggtgaacaaggatttgtaaaactgaatt |
298 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
14722315 |
attgaaatgtttgtcttttttattatgcaaattttcttggtgaacaaggatttgtaaaactgaatt |
14722250 |
T |
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