View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20312_low_29 (Length: 290)
Name: NF20312_low_29
Description: NF20312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20312_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 55355542 - 55355812
Alignment:
| Q |
1 |
cgattacggcctccatctattccttctctccgtggacgagggcatcaccgggtaccgcgacgattctcttgaaaccgttcatagaaatcagattgagtac |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55355542 |
cgattacggcctccatctattccttctctccgtcgacgagggcatcaccgggtaccgcgacgattctcttgaaaccgttcatagaaatcagattgagtac |
55355641 |
T |
|
| Q |
101 |
ggattgcctctcaaaattgtatcctacaaggatttgtacggttggacgatggacgagatcgtgaaactgattggtctgaagaacaattgcaccttctgtg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55355642 |
ggattgcctctcaaaattgtatcctacaaggatttgtacggttggacgatggacgagatcgtgaaactgattggtctgaagaacaattgcaccttctgtg |
55355741 |
T |
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| Q |
201 |
gagtgttccgtcggcaggcactggatcgaggagcggcattcctgaaagcagataaagtggtgactgggcac |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55355742 |
gagtgttccgtcggcaggcactggatcgaggagcggcattcctgaaagcagataaagtggtgactgggcac |
55355812 |
T |
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